data_3RT3 # _model_server_result.job_id WiWD7Bey_iK2i-comWCqWw _model_server_result.datetime_utc '2024-11-04 23:08:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":161}' # _entry.id 3RT3 # _exptl.entry_id 3RT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.46 _cell.angle_gamma 90 _cell.entry_id 3RT3 _cell.length_a 93.674 _cell.length_b 39.147 _cell.length_c 74.704 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -0.599756 0 74.701592 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 290 n n C1 O2 SIN sing 291 n n C1 C2 SIN sing 292 n n O2 HO2 SIN sing 293 n n C2 C3 SIN sing 294 n n C2 H21 SIN sing 295 n n C2 H22 SIN sing 296 n n C3 C4 SIN sing 297 n n C3 H31 SIN sing 298 n n C3 H32 SIN sing 299 n n C4 O3 SIN doub 300 n n C4 O4 SIN sing 301 n n O4 HO4 SIN sing 302 n n # _atom_sites.entry_id 3RT3 _atom_sites.fract_transf_matrix[1][1] 0.010675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000086 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SIN B 1 160 67 SIN SIN . D 3 SIN B 1 161 68 SIN SIN . E 4 HOH B 1 162 2 HOH HOH . E 4 HOH B 2 163 3 HOH HOH . E 4 HOH B 3 164 4 HOH HOH . E 4 HOH B 4 165 7 HOH HOH . E 4 HOH B 5 166 9 HOH HOH . E 4 HOH B 6 167 10 HOH HOH . E 4 HOH B 7 168 11 HOH HOH . E 4 HOH B 8 169 12 HOH HOH . E 4 HOH B 9 170 13 HOH HOH . E 4 HOH B 10 171 16 HOH HOH . E 4 HOH B 11 172 18 HOH HOH . E 4 HOH B 12 173 19 HOH HOH . E 4 HOH B 13 174 20 HOH HOH . E 4 HOH B 14 175 21 HOH HOH . E 4 HOH B 15 176 22 HOH HOH . E 4 HOH B 16 177 23 HOH HOH . E 4 HOH B 17 178 24 HOH HOH . E 4 HOH B 18 179 25 HOH HOH . E 4 HOH B 19 180 26 HOH HOH . E 4 HOH B 20 181 27 HOH HOH . E 4 HOH B 21 182 28 HOH HOH . E 4 HOH B 22 183 29 HOH HOH . E 4 HOH B 23 184 31 HOH HOH . E 4 HOH B 24 185 33 HOH HOH . E 4 HOH B 25 186 34 HOH HOH . E 4 HOH B 26 187 36 HOH HOH . E 4 HOH B 27 188 37 HOH HOH . E 4 HOH B 28 189 38 HOH HOH . E 4 HOH B 29 190 39 HOH HOH . E 4 HOH B 30 191 41 HOH HOH . E 4 HOH B 31 192 44 HOH HOH . E 4 HOH B 32 193 45 HOH HOH . E 4 HOH B 33 194 46 HOH HOH . E 4 HOH B 34 195 47 HOH HOH . E 4 HOH B 35 196 49 HOH HOH . E 4 HOH B 36 197 52 HOH HOH . E 4 HOH B 37 198 53 HOH HOH . E 4 HOH B 38 199 54 HOH HOH . E 4 HOH B 39 200 55 HOH HOH . E 4 HOH B 40 201 56 HOH HOH . E 4 HOH B 41 202 57 HOH HOH . E 4 HOH B 42 203 58 HOH HOH . E 4 HOH B 43 204 61 HOH HOH . E 4 HOH B 44 205 62 HOH HOH . E 4 HOH B 45 206 63 HOH HOH . E 4 HOH B 46 207 64 HOH HOH . E 4 HOH B 47 208 66 HOH HOH . E 4 HOH B 48 209 71 HOH HOH . E 4 HOH B 49 210 74 HOH HOH . E 4 HOH B 50 211 75 HOH HOH . E 4 HOH B 51 212 76 HOH HOH . E 4 HOH B 52 213 77 HOH HOH . E 4 HOH B 53 214 78 HOH HOH . E 4 HOH B 54 215 81 HOH HOH . E 4 HOH B 55 216 82 HOH HOH . F 4 HOH C 1 110 1 HOH HOH . F 4 HOH C 2 111 5 HOH HOH . F 4 HOH C 3 112 6 HOH HOH . F 4 HOH C 4 113 8 HOH HOH . F 4 HOH C 5 114 14 HOH HOH . F 4 HOH C 6 115 15 HOH HOH . F 4 HOH C 7 116 17 HOH HOH . F 4 HOH C 8 117 30 HOH HOH . F 4 HOH C 9 118 32 HOH HOH . F 4 HOH C 10 119 35 HOH HOH . F 4 HOH C 11 120 40 HOH HOH . F 4 HOH C 12 121 42 HOH HOH . F 4 HOH C 13 122 43 HOH HOH . F 4 HOH C 14 123 48 HOH HOH . F 4 HOH C 15 124 50 HOH HOH . F 4 HOH C 16 125 51 HOH HOH . F 4 HOH C 17 126 59 HOH HOH . F 4 HOH C 18 127 60 HOH HOH . F 4 HOH C 19 128 65 HOH HOH . F 4 HOH C 20 129 67 HOH HOH . F 4 HOH C 21 130 68 HOH HOH . F 4 HOH C 22 131 69 HOH HOH . F 4 HOH C 23 132 70 HOH HOH . F 4 HOH C 24 133 72 HOH HOH . F 4 HOH C 25 134 73 HOH HOH . F 4 HOH C 26 135 79 HOH HOH . F 4 HOH C 27 136 80 HOH HOH . F 4 HOH C 28 137 83 HOH HOH . F 4 HOH C 29 138 84 HOH HOH . F 4 HOH C 30 217 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . D 3 9.211 -9.722 16.714 1 71.67 ? C1 SIN 161 B 1 HETATM 2 O O1 SIN . . . D 3 9.664 -9.358 17.823 1 73.78 ? O1 SIN 161 B 1 HETATM 3 O O2 SIN . . . D 3 9.699 -10.738 16.168 1 74.67 ? O2 SIN 161 B 1 HETATM 4 C C2 SIN . . . D 3 8.092 -8.958 16.042 1 66.6 ? C2 SIN 161 B 1 HETATM 5 C C3 SIN . . . D 3 6.856 -9.849 16.01 1 66.23 ? C3 SIN 161 B 1 HETATM 6 C C4 SIN . . . D 3 5.744 -9.221 15.202 1 65.12 ? C4 SIN 161 B 1 HETATM 7 O O3 SIN . . . D 3 5.775 -8.014 14.869 1 46.87 ? O3 SIN 161 B 1 HETATM 8 O O4 SIN . . . D 3 4.77 -9.924 14.845 1 75.57 ? O4 SIN 161 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #