data_3RT6
#
_model_server_result.job_id            YAWhWNvIdWlK7WIh22PvIw 
_model_server_result.datetime_utc      '2024-11-24 20:38:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    3RT6 
#
_exptl.entry_id    3RT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              217.155 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RT6 
_cell.length_a            48.087 
_cell.length_b            47.392 
_cell.length_c            137.216 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 47.392 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 B CYS 206 1_555 A SG CYS 258 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc1 C ZN ZN . B ZN 1 1_555 A NE2 HIS 20 B HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'C7 H8 F N3 O4' 
_chem_comp.formula_weight    217.155 
_chem_comp.id                FWD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-AMINO-3-(5-FLUORO-2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-PROPIONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     FLUORO-WILLARDIINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FWD sing 83 n n 
N1 C6 FWD sing 84 n n 
N1 C7 FWD sing 85 n n 
C2 O2 FWD doub 86 n n 
C2 N3 FWD sing 87 n n 
N3 C4 FWD sing 88 n n 
N3 H3 FWD sing 89 n n 
C4 O4 FWD doub 90 n n 
C4 C5 FWD sing 91 n n 
C5 F5 FWD sing 92 n n 
C5 C6 FWD doub 93 n n 
C6 H6 FWD sing 94 n n 
C7 C8 FWD sing 95 n n 
C7 H71 FWD sing 96 n n 
C7 H72 FWD sing 97 n n 
C8 N8 FWD sing 98 n n 
C8 C9 FWD sing 99 n n 
C8 H8 FWD sing 100 n n 
N8 H81 FWD sing 101 n n 
N8 H82 FWD sing 102 n n 
C9 O91 FWD doub 103 n n 
C9 O92 FWD sing 104 n n 
O92 H92O FWD sing 105 n n 
#
_atom_sites.entry_id                     3RT6 
_atom_sites.fract_transf_matrix[1][1]    0.020796 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021101 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007288 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FWD B 1 401 401 FWD FWD . 
C 3 ZN B 1 1 1 ZN ZN . 
D 4 HOH B 1 262 262 HOH HOH . 
D 4 HOH B 2 263 263 HOH HOH . 
D 4 HOH B 3 264 264 HOH HOH . 
D 4 HOH B 4 265 265 HOH HOH . 
D 4 HOH B 5 266 266 HOH HOH . 
D 4 HOH B 6 267 267 HOH HOH . 
D 4 HOH B 7 268 268 HOH HOH . 
D 4 HOH B 8 269 269 HOH HOH . 
D 4 HOH B 9 270 270 HOH HOH . 
D 4 HOH B 10 271 271 HOH HOH . 
D 4 HOH B 11 272 272 HOH HOH . 
D 4 HOH B 12 273 273 HOH HOH . 
D 4 HOH B 13 274 274 HOH HOH . 
D 4 HOH B 14 275 275 HOH HOH . 
D 4 HOH B 15 276 276 HOH HOH . 
D 4 HOH B 16 277 277 HOH HOH . 
D 4 HOH B 17 278 278 HOH HOH . 
D 4 HOH B 18 279 279 HOH HOH . 
D 4 HOH B 19 280 280 HOH HOH . 
D 4 HOH B 20 281 281 HOH HOH . 
D 4 HOH B 21 282 282 HOH HOH . 
D 4 HOH B 22 283 283 HOH HOH . 
D 4 HOH B 23 284 284 HOH HOH . 
D 4 HOH B 24 285 285 HOH HOH . 
D 4 HOH B 25 286 286 HOH HOH . 
D 4 HOH B 26 287 287 HOH HOH . 
D 4 HOH B 27 288 288 HOH HOH . 
D 4 HOH B 28 289 289 HOH HOH . 
D 4 HOH B 29 290 290 HOH HOH . 
D 4 HOH B 30 291 291 HOH HOH . 
D 4 HOH B 31 292 292 HOH HOH . 
D 4 HOH B 32 293 293 HOH HOH . 
D 4 HOH B 33 294 294 HOH HOH . 
D 4 HOH B 34 295 295 HOH HOH . 
D 4 HOH B 35 296 296 HOH HOH . 
D 4 HOH B 36 297 297 HOH HOH . 
D 4 HOH B 37 298 298 HOH HOH . 
D 4 HOH B 38 299 299 HOH HOH . 
D 4 HOH B 39 300 300 HOH HOH . 
D 4 HOH B 40 301 301 HOH HOH . 
D 4 HOH B 41 302 302 HOH HOH . 
D 4 HOH B 42 303 303 HOH HOH . 
D 4 HOH B 43 304 304 HOH HOH . 
D 4 HOH B 44 305 305 HOH HOH . 
D 4 HOH B 45 306 306 HOH HOH . 
D 4 HOH B 46 307 307 HOH HOH . 
D 4 HOH B 47 308 308 HOH HOH . 
D 4 HOH B 48 309 309 HOH HOH . 
D 4 HOH B 49 310 310 HOH HOH . 
D 4 HOH B 50 311 311 HOH HOH . 
D 4 HOH B 51 312 312 HOH HOH . 
D 4 HOH B 52 313 313 HOH HOH . 
D 4 HOH B 53 314 314 HOH HOH . 
D 4 HOH B 54 315 315 HOH HOH . 
D 4 HOH B 55 316 316 HOH HOH . 
D 4 HOH B 56 317 317 HOH HOH . 
D 4 HOH B 57 318 318 HOH HOH . 
D 4 HOH B 58 319 319 HOH HOH . 
D 4 HOH B 59 320 320 HOH HOH . 
D 4 HOH B 60 321 321 HOH HOH . 
D 4 HOH B 61 322 322 HOH HOH . 
D 4 HOH B 62 323 323 HOH HOH . 
D 4 HOH B 63 324 324 HOH HOH . 
D 4 HOH B 64 325 325 HOH HOH . 
D 4 HOH B 65 326 326 HOH HOH . 
D 4 HOH B 66 327 327 HOH HOH . 
D 4 HOH B 67 328 328 HOH HOH . 
D 4 HOH B 68 329 329 HOH HOH . 
D 4 HOH B 69 330 330 HOH HOH . 
D 4 HOH B 70 331 331 HOH HOH . 
D 4 HOH B 71 332 332 HOH HOH . 
D 4 HOH B 72 333 333 HOH HOH . 
D 4 HOH B 73 334 334 HOH HOH . 
D 4 HOH B 74 335 335 HOH HOH . 
D 4 HOH B 75 336 336 HOH HOH . 
D 4 HOH B 76 337 337 HOH HOH . 
D 4 HOH B 77 338 338 HOH HOH . 
D 4 HOH B 78 339 339 HOH HOH . 
D 4 HOH B 79 340 340 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FWD . . . B 2 22.625 19.234 15.732 1 33.07 ? N1 FWD 401 B 1 
HETATM 2 C C2 FWD . . . B 2 23.102 17.999 15.523 1 33.77 ? C2 FWD 401 B 1 
HETATM 3 O O2 FWD . . . B 2 22.368 17.088 15.368 1 33.63 ? O2 FWD 401 B 1 
HETATM 4 N N3 FWD . . . B 2 24.457 17.782 15.514 1 33.86 ? N3 FWD 401 B 1 
HETATM 5 C C4 FWD . . . B 2 25.31 18.835 15.722 1 34.35 ? C4 FWD 401 B 1 
HETATM 6 O O4 FWD . . . B 2 26.691 18.603 15.686 1 35.87 ? O4 FWD 401 B 1 
HETATM 7 C C5 FWD . . . B 2 24.824 20.114 15.941 1 35.41 ? C5 FWD 401 B 1 
HETATM 8 F F5 FWD . . . B 2 25.696 21.142 16.153 1 36.65 ? F5 FWD 401 B 1 
HETATM 9 C C6 FWD . . . B 2 23.5 20.327 15.939 1 33.63 ? C6 FWD 401 B 1 
HETATM 10 C C7 FWD . . . B 2 21.2 19.448 15.673 1 32.11 ? C7 FWD 401 B 1 
HETATM 11 C C8 FWD . . . B 2 20.74 19.59 14.237 1 30.8 ? C8 FWD 401 B 1 
HETATM 12 N N8 FWD . . . B 2 20.881 20.923 13.709 1 31.02 ? N8 FWD 401 B 1 
HETATM 13 C C9 FWD . . . B 2 19.446 18.886 13.876 1 29.71 ? C9 FWD 401 B 1 
HETATM 14 O O91 FWD . . . B 2 18.433 19.776 13.517 1 31.15 ? O91 FWD 401 B 1 
HETATM 15 O O92 FWD . . . B 2 19.034 17.986 14.855 1 29.93 ? O92 FWD 401 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           401 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#