data_3RT8 # _model_server_result.job_id FoIDqOK_XHYfuH_hsC2Jtw _model_server_result.datetime_utc '2024-11-27 14:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 3RT8 # _exptl.entry_id 3RT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RT8 _cell.length_a 49.325 _cell.length_b 49.157 _cell.length_c 140.478 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -49.325 0 -70.239 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 203 A CYS 206 1_555 A SG CYS 258 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A NE2 HIS 20 A HIS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C7 H8 Cl N3 O4' _chem_comp.formula_weight 233.609 _chem_comp.id CWD _chem_comp.mon_nstd_flag n _chem_comp.name 3-(5-chloro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms chlorowillardiine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CWD sing 70 n n N1 C6 CWD sing 71 n n N1 C7 CWD sing 72 n n C2 O2 CWD doub 73 n n C2 N3 CWD sing 74 n n N3 C4 CWD sing 75 n n N3 HN3 CWD sing 76 n n C4 O4 CWD doub 77 n n C4 C5 CWD sing 78 n n C5 CL5 CWD sing 79 n n C5 C6 CWD doub 80 n n C6 H6 CWD sing 81 n n C7 C8 CWD sing 82 n n C7 H7 CWD sing 83 n n C7 H7A CWD sing 84 n n C8 N8 CWD sing 85 n n C8 C9 CWD sing 86 n n C8 H8 CWD sing 87 n n N8 HN8 CWD sing 88 n n N8 HN8A CWD sing 89 n n C9 O91 CWD doub 90 n n C9 O92 CWD sing 91 n n O92 H81 CWD sing 92 n n # _atom_sites.entry_id 3RT8 _atom_sites.fract_transf_matrix[1][1] 0.020274 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007119 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CWD A 1 401 401 CWD CWD . C 3 ZN A 1 1 1 ZN ZN . D 4 HOH A 1 262 262 HOH HOH . D 4 HOH A 2 263 263 HOH HOH . D 4 HOH A 3 264 264 HOH HOH . D 4 HOH A 4 265 265 HOH HOH . D 4 HOH A 5 266 266 HOH HOH . D 4 HOH A 6 267 267 HOH HOH . D 4 HOH A 7 268 268 HOH HOH . D 4 HOH A 8 269 269 HOH HOH . D 4 HOH A 9 270 270 HOH HOH . D 4 HOH A 10 271 271 HOH HOH . D 4 HOH A 11 272 272 HOH HOH . D 4 HOH A 12 273 273 HOH HOH . D 4 HOH A 13 274 274 HOH HOH . D 4 HOH A 14 275 275 HOH HOH . D 4 HOH A 15 276 276 HOH HOH . D 4 HOH A 16 277 277 HOH HOH . D 4 HOH A 17 278 278 HOH HOH . D 4 HOH A 18 279 279 HOH HOH . D 4 HOH A 19 280 280 HOH HOH . D 4 HOH A 20 281 281 HOH HOH . D 4 HOH A 21 282 282 HOH HOH . D 4 HOH A 22 283 283 HOH HOH . D 4 HOH A 23 284 284 HOH HOH . D 4 HOH A 24 285 285 HOH HOH . D 4 HOH A 25 286 286 HOH HOH . D 4 HOH A 26 287 287 HOH HOH . D 4 HOH A 27 288 288 HOH HOH . D 4 HOH A 28 289 289 HOH HOH . D 4 HOH A 29 290 290 HOH HOH . D 4 HOH A 30 291 291 HOH HOH . D 4 HOH A 31 292 292 HOH HOH . D 4 HOH A 32 293 293 HOH HOH . D 4 HOH A 33 294 294 HOH HOH . D 4 HOH A 34 295 295 HOH HOH . D 4 HOH A 35 296 296 HOH HOH . D 4 HOH A 36 297 297 HOH HOH . D 4 HOH A 37 298 298 HOH HOH . D 4 HOH A 38 299 299 HOH HOH . D 4 HOH A 39 300 300 HOH HOH . D 4 HOH A 40 301 301 HOH HOH . D 4 HOH A 41 302 302 HOH HOH . D 4 HOH A 42 303 303 HOH HOH . D 4 HOH A 43 304 304 HOH HOH . D 4 HOH A 44 305 305 HOH HOH . D 4 HOH A 45 306 306 HOH HOH . D 4 HOH A 46 307 307 HOH HOH . D 4 HOH A 47 308 308 HOH HOH . D 4 HOH A 48 309 309 HOH HOH . D 4 HOH A 49 310 310 HOH HOH . D 4 HOH A 50 311 311 HOH HOH . D 4 HOH A 51 312 312 HOH HOH . D 4 HOH A 52 313 313 HOH HOH . D 4 HOH A 53 314 314 HOH HOH . D 4 HOH A 54 315 315 HOH HOH . D 4 HOH A 55 316 316 HOH HOH . D 4 HOH A 56 317 317 HOH HOH . D 4 HOH A 57 318 318 HOH HOH . D 4 HOH A 58 319 319 HOH HOH . D 4 HOH A 59 320 320 HOH HOH . D 4 HOH A 60 321 321 HOH HOH . D 4 HOH A 61 322 322 HOH HOH . D 4 HOH A 62 323 323 HOH HOH . D 4 HOH A 63 324 324 HOH HOH . D 4 HOH A 64 325 325 HOH HOH . D 4 HOH A 65 326 326 HOH HOH . D 4 HOH A 66 327 327 HOH HOH . D 4 HOH A 67 328 328 HOH HOH . D 4 HOH A 68 329 329 HOH HOH . D 4 HOH A 69 330 330 HOH HOH . D 4 HOH A 70 331 331 HOH HOH . D 4 HOH A 71 332 332 HOH HOH . D 4 HOH A 72 333 333 HOH HOH . D 4 HOH A 73 334 334 HOH HOH . D 4 HOH A 74 335 335 HOH HOH . D 4 HOH A 75 336 336 HOH HOH . D 4 HOH A 76 337 337 HOH HOH . D 4 HOH A 77 338 338 HOH HOH . D 4 HOH A 78 339 339 HOH HOH . D 4 HOH A 79 340 340 HOH HOH . D 4 HOH A 80 341 341 HOH HOH . D 4 HOH A 81 342 342 HOH HOH . D 4 HOH A 82 343 343 HOH HOH . D 4 HOH A 83 345 345 HOH HOH . D 4 HOH A 84 346 346 HOH HOH . D 4 HOH A 85 347 347 HOH HOH . D 4 HOH A 86 348 348 HOH HOH . D 4 HOH A 87 349 349 HOH HOH . D 4 HOH A 88 350 350 HOH HOH . D 4 HOH A 89 351 351 HOH HOH . D 4 HOH A 90 352 352 HOH HOH . D 4 HOH A 91 353 353 HOH HOH . D 4 HOH A 92 354 354 HOH HOH . D 4 HOH A 93 355 355 HOH HOH . D 4 HOH A 94 356 356 HOH HOH . D 4 HOH A 95 357 357 HOH HOH . D 4 HOH A 96 358 358 HOH HOH . D 4 HOH A 97 359 359 HOH HOH . D 4 HOH A 98 360 360 HOH HOH . D 4 HOH A 99 361 361 HOH HOH . D 4 HOH A 100 362 362 HOH HOH . D 4 HOH A 101 363 363 HOH HOH . D 4 HOH A 102 364 364 HOH HOH . D 4 HOH A 103 365 365 HOH HOH . D 4 HOH A 104 366 366 HOH HOH . D 4 HOH A 105 367 367 HOH HOH . D 4 HOH A 106 368 368 HOH HOH . D 4 HOH A 107 369 369 HOH HOH . D 4 HOH A 108 370 370 HOH HOH . D 4 HOH A 109 371 371 HOH HOH . D 4 HOH A 110 372 372 HOH HOH . D 4 HOH A 111 373 373 HOH HOH . D 4 HOH A 112 374 374 HOH HOH . D 4 HOH A 113 375 375 HOH HOH . D 4 HOH A 114 376 376 HOH HOH . D 4 HOH A 115 377 377 HOH HOH . D 4 HOH A 116 378 378 HOH HOH . D 4 HOH A 117 379 379 HOH HOH . D 4 HOH A 118 380 380 HOH HOH . D 4 HOH A 119 381 381 HOH HOH . D 4 HOH A 120 382 382 HOH HOH . D 4 HOH A 121 383 383 HOH HOH . D 4 HOH A 122 384 384 HOH HOH . D 4 HOH A 123 385 385 HOH HOH . D 4 HOH A 124 386 386 HOH HOH . D 4 HOH A 125 387 387 HOH HOH . D 4 HOH A 126 388 388 HOH HOH . D 4 HOH A 127 389 389 HOH HOH . D 4 HOH A 128 390 390 HOH HOH . D 4 HOH A 129 391 391 HOH HOH . D 4 HOH A 130 392 392 HOH HOH . D 4 HOH A 131 393 393 HOH HOH . D 4 HOH A 132 394 394 HOH HOH . D 4 HOH A 133 395 395 HOH HOH . D 4 HOH A 134 396 396 HOH HOH . D 4 HOH A 135 397 397 HOH HOH . D 4 HOH A 136 398 398 HOH HOH . D 4 HOH A 137 399 399 HOH HOH . D 4 HOH A 138 400 400 HOH HOH . D 4 HOH A 139 402 402 HOH HOH . D 4 HOH A 140 403 403 HOH HOH . D 4 HOH A 141 404 404 HOH HOH . D 4 HOH A 142 405 405 HOH HOH . D 4 HOH A 143 406 406 HOH HOH . D 4 HOH A 144 407 407 HOH HOH . D 4 HOH A 145 408 408 HOH HOH . D 4 HOH A 146 409 409 HOH HOH . D 4 HOH A 147 410 410 HOH HOH . D 4 HOH A 148 411 411 HOH HOH . D 4 HOH A 149 412 412 HOH HOH . D 4 HOH A 150 413 413 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CWD . . . B 2 -19.949 -1.105 -19.307 1 30.28 ? N1 CWD 401 A 1 HETATM 2 C C2 CWD . . . B 2 -18.71 -0.652 -19.512 1 31.04 ? C2 CWD 401 A 1 HETATM 3 O O2 CWD . . . B 2 -17.815 -1.422 -19.654 1 33.7 ? O2 CWD 401 A 1 HETATM 4 N N3 CWD . . . B 2 -18.456 0.702 -19.521 1 31.2 ? N3 CWD 401 A 1 HETATM 5 C C4 CWD . . . B 2 -19.478 1.592 -19.326 1 31.29 ? C4 CWD 401 A 1 HETATM 6 O O4 CWD . . . B 2 -19.2 2.951 -19.37 1 29.64 ? O4 CWD 401 A 1 HETATM 7 C C5 CWD . . . B 2 -20.774 1.133 -19.114 1 32.08 ? C5 CWD 401 A 1 HETATM 8 CL CL5 CWD . . . B 2 -22.179 2.236 -18.89 1 32.78 ? CL5 CWD 401 A 1 HETATM 9 C C6 CWD . . . B 2 -21.001 -0.194 -19.107 1 31.15 ? C6 CWD 401 A 1 HETATM 10 C C7 CWD . . . B 2 -20.187 -2.531 -19.361 1 28.73 ? C7 CWD 401 A 1 HETATM 11 C C8 CWD . . . B 2 -20.194 -3.121 -20.774 1 28.28 ? C8 CWD 401 A 1 HETATM 12 N N8 CWD . . . B 2 -21.332 -2.712 -21.577 1 27.5 ? N8 CWD 401 A 1 HETATM 13 C C9 CWD . . . B 2 -19.783 -4.592 -20.881 1 28.88 ? C9 CWD 401 A 1 HETATM 14 O O91 CWD . . . B 2 -20.538 -5.375 -21.356 1 26.55 ? O91 CWD 401 A 1 HETATM 15 O O92 CWD . . . B 2 -18.685 -5.016 -20.122 1 29.65 ? O92 CWD 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #