data_3RTC # _model_server_result.job_id oRClvFi3C5F79p5yBEKypA _model_server_result.datetime_utc '2024-11-22 10:47:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":495}' # _entry.id 3RTC # _exptl.entry_id 3RTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RTC _cell.length_a 122.399 _cell.length_b 122.399 _cell.length_c 155.122 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.324 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc8 D MG MG . A MG 492 1_555 F O1A ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O1B ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc10 D MG MG . A MG 492 1_555 F O2G ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc11 D MG MG . A MG 492 1_555 H O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc12 D MG MG . A MG 492 1_555 H O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc13 D MG MG . A MG 492 1_555 H O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 286 n n PA O2A NAD sing 287 n n PA O5B NAD sing 288 n n PA O3 NAD sing 289 n n O2A HOA2 NAD sing 290 n n O5B C5B NAD sing 291 n n C5B C4B NAD sing 292 n n C5B H51A NAD sing 293 n n C5B H52A NAD sing 294 n n C4B O4B NAD sing 295 n n C4B C3B NAD sing 296 n n C4B H4B NAD sing 297 n n O4B C1B NAD sing 298 n n C3B O3B NAD sing 299 n n C3B C2B NAD sing 300 n n C3B H3B NAD sing 301 n n O3B HO3A NAD sing 302 n n C2B O2B NAD sing 303 n n C2B C1B NAD sing 304 n n C2B H2B NAD sing 305 n n O2B HO2A NAD sing 306 n n C1B N9A NAD sing 307 n n C1B H1B NAD sing 308 n n N9A C8A NAD sing 309 n y N9A C4A NAD sing 310 n y C8A N7A NAD doub 311 n y C8A H8A NAD sing 312 n n N7A C5A NAD sing 313 n y C5A C6A NAD sing 314 n y C5A C4A NAD doub 315 n y C6A N6A NAD sing 316 n n C6A N1A NAD doub 317 n y N6A H61A NAD sing 318 n n N6A H62A NAD sing 319 n n N1A C2A NAD sing 320 n y C2A N3A NAD doub 321 n y C2A H2A NAD sing 322 n n N3A C4A NAD sing 323 n y O3 PN NAD sing 324 n n PN O1N NAD doub 325 n n PN O2N NAD sing 326 n n PN O5D NAD sing 327 n n O5D C5D NAD sing 328 n n C5D C4D NAD sing 329 n n C5D H51N NAD sing 330 n n C5D H52N NAD sing 331 n n C4D O4D NAD sing 332 n n C4D C3D NAD sing 333 n n C4D H4D NAD sing 334 n n O4D C1D NAD sing 335 n n C3D O3D NAD sing 336 n n C3D C2D NAD sing 337 n n C3D H3D NAD sing 338 n n O3D HO3N NAD sing 339 n n C2D O2D NAD sing 340 n n C2D C1D NAD sing 341 n n C2D H2D NAD sing 342 n n O2D HO2N NAD sing 343 n n C1D N1N NAD sing 344 n n C1D H1D NAD sing 345 n n N1N C2N NAD sing 346 n y N1N C6N NAD doub 347 n y C2N C3N NAD doub 348 n y C2N H2N NAD sing 349 n n C3N C7N NAD sing 350 n n C3N C4N NAD sing 351 n y C7N O7N NAD doub 352 n n C7N N7N NAD sing 353 n n N7N H71N NAD sing 354 n n N7N H72N NAD sing 355 n n C4N C5N NAD doub 356 n y C4N H4N NAD sing 357 n n C5N C6N NAD sing 358 n y C5N H5N NAD sing 359 n n C6N H6N NAD sing 360 n n # _atom_sites.entry_id 3RTC _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 NAD A 1 493 3 NAD NAD . F 6 ATP A 1 494 4 ATP ATP . G 5 NAD A 1 495 5 NAD NAD . H 7 HOH A 1 496 1 HOH HOH . H 7 HOH A 2 497 2 HOH HOH . H 7 HOH A 3 498 3 HOH HOH . H 7 HOH A 4 499 4 HOH HOH . H 7 HOH A 5 500 5 HOH HOH . H 7 HOH A 6 501 6 HOH HOH . H 7 HOH A 7 502 7 HOH HOH . H 7 HOH A 8 503 8 HOH HOH . H 7 HOH A 9 504 9 HOH HOH . H 7 HOH A 10 505 10 HOH HOH . H 7 HOH A 11 506 11 HOH HOH . H 7 HOH A 12 507 12 HOH HOH . H 7 HOH A 13 508 13 HOH HOH . H 7 HOH A 14 509 14 HOH HOH . H 7 HOH A 15 510 15 HOH HOH . H 7 HOH A 16 511 16 HOH HOH . H 7 HOH A 17 512 17 HOH HOH . H 7 HOH A 18 513 18 HOH HOH . H 7 HOH A 19 514 19 HOH HOH . H 7 HOH A 20 515 20 HOH HOH . H 7 HOH A 21 516 21 HOH HOH . H 7 HOH A 22 517 22 HOH HOH . H 7 HOH A 23 518 23 HOH HOH . H 7 HOH A 24 519 24 HOH HOH . H 7 HOH A 25 520 25 HOH HOH . H 7 HOH A 26 521 26 HOH HOH . H 7 HOH A 27 522 27 HOH HOH . H 7 HOH A 28 523 28 HOH HOH . H 7 HOH A 29 524 29 HOH HOH . H 7 HOH A 30 525 30 HOH HOH . H 7 HOH A 31 526 31 HOH HOH . H 7 HOH A 32 527 32 HOH HOH . H 7 HOH A 33 528 33 HOH HOH . H 7 HOH A 34 529 34 HOH HOH . H 7 HOH A 35 530 35 HOH HOH . H 7 HOH A 36 531 36 HOH HOH . H 7 HOH A 37 532 37 HOH HOH . H 7 HOH A 38 533 38 HOH HOH . H 7 HOH A 39 534 39 HOH HOH . H 7 HOH A 40 535 40 HOH HOH . H 7 HOH A 41 536 41 HOH HOH . H 7 HOH A 42 537 42 HOH HOH . H 7 HOH A 43 538 43 HOH HOH . H 7 HOH A 44 539 44 HOH HOH . H 7 HOH A 45 540 45 HOH HOH . H 7 HOH A 46 541 46 HOH HOH . H 7 HOH A 47 542 47 HOH HOH . H 7 HOH A 48 543 48 HOH HOH . H 7 HOH A 49 544 49 HOH HOH . H 7 HOH A 50 545 50 HOH HOH . H 7 HOH A 51 546 51 HOH HOH . H 7 HOH A 52 547 52 HOH HOH . H 7 HOH A 53 548 53 HOH HOH . H 7 HOH A 54 549 54 HOH HOH . H 7 HOH A 55 550 55 HOH HOH . H 7 HOH A 56 551 56 HOH HOH . H 7 HOH A 57 552 57 HOH HOH . H 7 HOH A 58 553 58 HOH HOH . H 7 HOH A 59 554 59 HOH HOH . H 7 HOH A 60 555 60 HOH HOH . H 7 HOH A 61 556 61 HOH HOH . H 7 HOH A 62 557 62 HOH HOH . H 7 HOH A 63 558 63 HOH HOH . H 7 HOH A 64 559 64 HOH HOH . H 7 HOH A 65 560 65 HOH HOH . H 7 HOH A 66 561 66 HOH HOH . H 7 HOH A 67 562 67 HOH HOH . H 7 HOH A 68 563 68 HOH HOH . H 7 HOH A 69 564 69 HOH HOH . H 7 HOH A 70 565 70 HOH HOH . H 7 HOH A 71 566 71 HOH HOH . H 7 HOH A 72 567 72 HOH HOH . H 7 HOH A 73 568 73 HOH HOH . H 7 HOH A 74 569 74 HOH HOH . H 7 HOH A 75 570 75 HOH HOH . H 7 HOH A 76 571 76 HOH HOH . H 7 HOH A 77 572 77 HOH HOH . H 7 HOH A 78 573 78 HOH HOH . H 7 HOH A 79 574 79 HOH HOH . H 7 HOH A 80 575 80 HOH HOH . H 7 HOH A 81 576 81 HOH HOH . H 7 HOH A 82 577 82 HOH HOH . H 7 HOH A 83 578 83 HOH HOH . H 7 HOH A 84 579 84 HOH HOH . H 7 HOH A 85 580 85 HOH HOH . H 7 HOH A 86 581 86 HOH HOH . H 7 HOH A 87 582 87 HOH HOH . H 7 HOH A 88 583 88 HOH HOH . H 7 HOH A 89 584 89 HOH HOH . H 7 HOH A 90 585 90 HOH HOH . H 7 HOH A 91 586 91 HOH HOH . H 7 HOH A 92 587 92 HOH HOH . H 7 HOH A 93 588 93 HOH HOH . H 7 HOH A 94 589 94 HOH HOH . H 7 HOH A 95 590 95 HOH HOH . H 7 HOH A 96 591 96 HOH HOH . H 7 HOH A 97 592 97 HOH HOH . H 7 HOH A 98 593 98 HOH HOH . H 7 HOH A 99 594 99 HOH HOH . H 7 HOH A 100 595 100 HOH HOH . H 7 HOH A 101 596 101 HOH HOH . H 7 HOH A 102 597 102 HOH HOH . H 7 HOH A 103 598 103 HOH HOH . H 7 HOH A 104 599 104 HOH HOH . H 7 HOH A 105 600 105 HOH HOH . H 7 HOH A 106 601 106 HOH HOH . H 7 HOH A 107 602 107 HOH HOH . H 7 HOH A 108 603 108 HOH HOH . H 7 HOH A 109 604 109 HOH HOH . H 7 HOH A 110 605 110 HOH HOH . H 7 HOH A 111 606 111 HOH HOH . H 7 HOH A 112 607 112 HOH HOH . H 7 HOH A 113 608 113 HOH HOH . H 7 HOH A 114 609 114 HOH HOH . H 7 HOH A 115 610 115 HOH HOH . H 7 HOH A 116 611 116 HOH HOH . H 7 HOH A 117 612 117 HOH HOH . H 7 HOH A 118 613 118 HOH HOH . H 7 HOH A 119 614 119 HOH HOH . H 7 HOH A 120 615 120 HOH HOH . H 7 HOH A 121 616 121 HOH HOH . H 7 HOH A 122 617 122 HOH HOH . H 7 HOH A 123 618 123 HOH HOH . H 7 HOH A 124 619 124 HOH HOH . H 7 HOH A 125 620 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 5 -25.815 9.771 -46.412 1 94.62 ? PA NAD 495 A 1 HETATM 2 O O1A NAD . . . G 5 -26.588 9.054 -47.458 1 92.29 ? O1A NAD 495 A 1 HETATM 3 O O2A NAD . . . G 5 -25.169 8.74 -45.544 1 94.47 ? O2A NAD 495 A 1 HETATM 4 O O5B NAD . . . G 5 -26.919 10.72 -45.709 1 89.89 ? O5B NAD 495 A 1 HETATM 5 C C5B NAD . . . G 5 -26.621 11.682 -44.724 1 85.84 ? C5B NAD 495 A 1 HETATM 6 C C4B NAD . . . G 5 -27.943 12.298 -44.286 1 83.95 ? C4B NAD 495 A 1 HETATM 7 O O4B NAD . . . G 5 -28.765 11.345 -43.622 1 80.92 ? O4B NAD 495 A 1 HETATM 8 C C3B NAD . . . G 5 -27.762 13.457 -43.314 1 83.12 ? C3B NAD 495 A 1 HETATM 9 O O3B NAD . . . G 5 -27.714 14.663 -44.03 1 86.01 ? O3B NAD 495 A 1 HETATM 10 C C2B NAD . . . G 5 -28.956 13.342 -42.363 1 81.1 ? C2B NAD 495 A 1 HETATM 11 O O2B NAD . . . G 5 -30.103 14.066 -42.75 1 80.42 ? O2B NAD 495 A 1 HETATM 12 C C1B NAD . . . G 5 -29.332 11.874 -42.433 1 77.88 ? C1B NAD 495 A 1 HETATM 13 N N9A NAD . . . G 5 -28.945 11.123 -41.217 1 71.78 ? N9A NAD 495 A 1 HETATM 14 C C8A NAD . . . G 5 -27.993 10.163 -41.022 1 69.61 ? C8A NAD 495 A 1 HETATM 15 N N7A NAD . . . G 5 -28.048 9.756 -39.729 1 66.66 ? N7A NAD 495 A 1 HETATM 16 C C5A NAD . . . G 5 -29.039 10.429 -39.089 1 66.99 ? C5A NAD 495 A 1 HETATM 17 C C6A NAD . . . G 5 -29.557 10.438 -37.763 1 67.1 ? C6A NAD 495 A 1 HETATM 18 N N6A NAD . . . G 5 -29.249 9.526 -36.79 1 61.82 ? N6A NAD 495 A 1 HETATM 19 N N1A NAD . . . G 5 -30.593 11.327 -37.504 1 66.3 ? N1A NAD 495 A 1 HETATM 20 C C2A NAD . . . G 5 -31.111 12.178 -38.461 1 67.38 ? C2A NAD 495 A 1 HETATM 21 N N3A NAD . . . G 5 -30.591 12.159 -39.737 1 68.9 ? N3A NAD 495 A 1 HETATM 22 C C4A NAD . . . G 5 -29.588 11.296 -40.037 1 69.15 ? C4A NAD 495 A 1 HETATM 23 O O3 NAD . . . G 5 -24.717 10.852 -46.991 1 98.67 ? O3 NAD 495 A 1 HETATM 24 P PN NAD . . . G 5 -23.176 11.16 -46.477 1 102.59 ? PN NAD 495 A 1 HETATM 25 O O1N NAD . . . G 5 -22.68 10.062 -45.61 1 103 ? O1N NAD 495 A 1 HETATM 26 O O2N NAD . . . G 5 -23.07 12.559 -45.977 1 103.07 ? O2N NAD 495 A 1 HETATM 27 O O5D NAD . . . G 5 -22.266 11.068 -47.823 1 102.51 ? O5D NAD 495 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #