data_3RTE # _model_server_result.job_id uqX-bezZheYC3bzGfFiScA _model_server_result.datetime_utc '2024-11-22 09:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":492}' # _entry.id 3RTE # _exptl.entry_id 3RTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RTE _cell.length_a 122.441 _cell.length_b 122.441 _cell.length_c 155.05 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc8 D MG MG . A MG 492 1_555 F O1A ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O3B ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc10 D MG MG . A MG 492 1_555 F O2G ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc11 D MG MG . A MG 492 1_555 H O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 D MG MG . A MG 492 1_555 H O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc13 D MG MG . A MG 492 1_555 H O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RTE _atom_sites.fract_transf_matrix[1][1] 0.008167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 NAP A 1 493 3 NAP NAP . F 6 ATP A 1 494 4 ATP ATP . G 5 NAP A 1 495 5 NAP NAP . H 7 HOH A 1 496 1 HOH HOH . H 7 HOH A 2 497 2 HOH HOH . H 7 HOH A 3 498 3 HOH HOH . H 7 HOH A 4 499 4 HOH HOH . H 7 HOH A 5 500 5 HOH HOH . H 7 HOH A 6 501 6 HOH HOH . H 7 HOH A 7 502 7 HOH HOH . H 7 HOH A 8 503 8 HOH HOH . H 7 HOH A 9 504 9 HOH HOH . H 7 HOH A 10 505 10 HOH HOH . H 7 HOH A 11 506 11 HOH HOH . H 7 HOH A 12 507 12 HOH HOH . H 7 HOH A 13 508 13 HOH HOH . H 7 HOH A 14 509 14 HOH HOH . H 7 HOH A 15 510 15 HOH HOH . H 7 HOH A 16 511 16 HOH HOH . H 7 HOH A 17 512 17 HOH HOH . H 7 HOH A 18 513 18 HOH HOH . H 7 HOH A 19 514 19 HOH HOH . H 7 HOH A 20 515 20 HOH HOH . H 7 HOH A 21 516 21 HOH HOH . H 7 HOH A 22 517 22 HOH HOH . H 7 HOH A 23 518 23 HOH HOH . H 7 HOH A 24 519 24 HOH HOH . H 7 HOH A 25 520 25 HOH HOH . H 7 HOH A 26 521 26 HOH HOH . H 7 HOH A 27 522 27 HOH HOH . H 7 HOH A 28 523 28 HOH HOH . H 7 HOH A 29 524 29 HOH HOH . H 7 HOH A 30 525 30 HOH HOH . H 7 HOH A 31 526 31 HOH HOH . H 7 HOH A 32 527 32 HOH HOH . H 7 HOH A 33 528 33 HOH HOH . H 7 HOH A 34 529 34 HOH HOH . H 7 HOH A 35 530 35 HOH HOH . H 7 HOH A 36 531 36 HOH HOH . H 7 HOH A 37 532 37 HOH HOH . H 7 HOH A 38 533 38 HOH HOH . H 7 HOH A 39 534 39 HOH HOH . H 7 HOH A 40 535 40 HOH HOH . H 7 HOH A 41 536 41 HOH HOH . H 7 HOH A 42 537 42 HOH HOH . H 7 HOH A 43 538 43 HOH HOH . H 7 HOH A 44 539 44 HOH HOH . H 7 HOH A 45 540 45 HOH HOH . H 7 HOH A 46 541 46 HOH HOH . H 7 HOH A 47 542 47 HOH HOH . H 7 HOH A 48 543 48 HOH HOH . H 7 HOH A 49 544 49 HOH HOH . H 7 HOH A 50 545 50 HOH HOH . H 7 HOH A 51 546 51 HOH HOH . H 7 HOH A 52 547 52 HOH HOH . H 7 HOH A 53 548 53 HOH HOH . H 7 HOH A 54 549 54 HOH HOH . H 7 HOH A 55 550 55 HOH HOH . H 7 HOH A 56 551 56 HOH HOH . H 7 HOH A 57 552 57 HOH HOH . H 7 HOH A 58 553 58 HOH HOH . H 7 HOH A 59 554 59 HOH HOH . H 7 HOH A 60 555 60 HOH HOH . H 7 HOH A 61 556 61 HOH HOH . H 7 HOH A 62 557 62 HOH HOH . H 7 HOH A 63 558 63 HOH HOH . H 7 HOH A 64 559 64 HOH HOH . H 7 HOH A 65 560 65 HOH HOH . H 7 HOH A 66 561 66 HOH HOH . H 7 HOH A 67 562 67 HOH HOH . H 7 HOH A 68 563 68 HOH HOH . H 7 HOH A 69 564 69 HOH HOH . H 7 HOH A 70 565 70 HOH HOH . H 7 HOH A 71 566 71 HOH HOH . H 7 HOH A 72 567 72 HOH HOH . H 7 HOH A 73 568 73 HOH HOH . H 7 HOH A 74 569 74 HOH HOH . H 7 HOH A 75 570 75 HOH HOH . H 7 HOH A 76 571 76 HOH HOH . H 7 HOH A 77 572 77 HOH HOH . H 7 HOH A 78 573 78 HOH HOH . H 7 HOH A 79 574 79 HOH HOH . H 7 HOH A 80 575 80 HOH HOH . H 7 HOH A 81 576 81 HOH HOH . H 7 HOH A 82 577 82 HOH HOH . H 7 HOH A 83 578 83 HOH HOH . H 7 HOH A 84 579 84 HOH HOH . H 7 HOH A 85 580 85 HOH HOH . H 7 HOH A 86 581 86 HOH HOH . H 7 HOH A 87 582 87 HOH HOH . H 7 HOH A 88 583 88 HOH HOH . H 7 HOH A 89 584 89 HOH HOH . H 7 HOH A 90 585 90 HOH HOH . H 7 HOH A 91 586 91 HOH HOH . H 7 HOH A 92 587 92 HOH HOH . H 7 HOH A 93 588 93 HOH HOH . H 7 HOH A 94 589 94 HOH HOH . H 7 HOH A 95 590 95 HOH HOH . H 7 HOH A 96 591 96 HOH HOH . H 7 HOH A 97 592 97 HOH HOH . H 7 HOH A 98 593 98 HOH HOH . H 7 HOH A 99 594 99 HOH HOH . H 7 HOH A 100 595 100 HOH HOH . H 7 HOH A 101 596 101 HOH HOH . H 7 HOH A 102 597 102 HOH HOH . H 7 HOH A 103 598 103 HOH HOH . H 7 HOH A 104 599 104 HOH HOH . H 7 HOH A 105 600 105 HOH HOH . H 7 HOH A 106 601 106 HOH HOH . H 7 HOH A 107 602 107 HOH HOH . H 7 HOH A 108 603 108 HOH HOH . H 7 HOH A 109 604 109 HOH HOH . H 7 HOH A 110 605 110 HOH HOH . H 7 HOH A 111 606 112 HOH HOH . H 7 HOH A 112 607 113 HOH HOH . H 7 HOH A 113 608 114 HOH HOH . H 7 HOH A 114 609 115 HOH HOH . H 7 HOH A 115 610 116 HOH HOH . H 7 HOH A 116 611 117 HOH HOH . H 7 HOH A 117 612 118 HOH HOH . H 7 HOH A 118 613 119 HOH HOH . H 7 HOH A 119 614 120 HOH HOH . H 7 HOH A 120 615 121 HOH HOH . H 7 HOH A 121 616 122 HOH HOH . H 7 HOH A 122 617 123 HOH HOH . H 7 HOH A 123 618 124 HOH HOH . H 7 HOH A 124 619 125 HOH HOH . H 7 HOH A 125 620 126 HOH HOH . H 7 HOH A 126 621 127 HOH HOH . H 7 HOH A 127 622 128 HOH HOH . H 7 HOH A 128 623 129 HOH HOH . H 7 HOH A 129 624 130 HOH HOH . H 7 HOH A 130 625 131 HOH HOH . H 7 HOH A 131 626 132 HOH HOH . H 7 HOH A 132 627 133 HOH HOH . H 7 HOH A 133 628 134 HOH HOH . H 7 HOH A 134 629 135 HOH HOH . H 7 HOH A 135 630 136 HOH HOH . H 7 HOH A 136 631 137 HOH HOH . H 7 HOH A 137 632 138 HOH HOH . H 7 HOH A 138 633 139 HOH HOH . H 7 HOH A 139 634 140 HOH HOH . H 7 HOH A 140 635 141 HOH HOH . H 7 HOH A 141 636 142 HOH HOH . I 7 HOH B 1 111 111 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.251 _atom_site.Cartn_y 3.707 _atom_site.Cartn_z 42.988 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 492 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #