data_3RTH # _model_server_result.job_id vz3K8jXfOiM2m_28RViG9A _model_server_result.datetime_utc '2024-12-21 16:17:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":393}' # _entry.id 3RTH # _exptl.entry_id 3RTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RTH _cell.length_a 102.04 _cell.length_b 102.04 _cell.length_c 169.103 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RTH _atom_sites.fract_transf_matrix[1][1] 0.0098 _atom_sites.fract_transf_matrix[1][2] 0.005658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 393 1 IOD IOD . C 2 IOD A 1 394 2 IOD IOD . D 2 IOD A 1 395 3 IOD IOD . E 2 IOD A 1 396 4 IOD IOD . F 3 RTH A 1 397 1 RTH RTH . G 4 HOH A 1 398 1 HOH HOH . G 4 HOH A 2 399 2 HOH HOH . G 4 HOH A 3 400 3 HOH HOH . G 4 HOH A 4 401 4 HOH HOH . G 4 HOH A 5 402 5 HOH HOH . G 4 HOH A 6 403 6 HOH HOH . G 4 HOH A 7 404 7 HOH HOH . G 4 HOH A 8 405 8 HOH HOH . G 4 HOH A 9 406 9 HOH HOH . G 4 HOH A 10 407 10 HOH HOH . G 4 HOH A 11 408 11 HOH HOH . G 4 HOH A 12 409 12 HOH HOH . G 4 HOH A 13 410 13 HOH HOH . G 4 HOH A 14 411 14 HOH HOH . G 4 HOH A 15 412 15 HOH HOH . G 4 HOH A 16 413 16 HOH HOH . G 4 HOH A 17 414 17 HOH HOH . G 4 HOH A 18 415 18 HOH HOH . G 4 HOH A 19 416 19 HOH HOH . G 4 HOH A 20 417 20 HOH HOH . G 4 HOH A 21 418 21 HOH HOH . G 4 HOH A 22 419 22 HOH HOH . G 4 HOH A 23 420 23 HOH HOH . G 4 HOH A 24 421 24 HOH HOH . G 4 HOH A 25 422 25 HOH HOH . G 4 HOH A 26 423 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 79.997 _atom_site.Cartn_y 57.769 _atom_site.Cartn_z 15.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 393 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #