data_3RTH # _model_server_result.job_id 2j4x1KMDRXhe1-uxWoMEig _model_server_result.datetime_utc '2024-12-30 17:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":397}' # _entry.id 3RTH # _exptl.entry_id 3RTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.397 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[2-(3,3-dimethylbut-1-yn-1-yl)phenyl]quinolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RTH _cell.length_a 102.04 _cell.length_b 102.04 _cell.length_c 169.103 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? # _chem_comp.formula 'C21 H20 N2' _chem_comp.formula_weight 300.397 _chem_comp.id RTH _chem_comp.mon_nstd_flag . _chem_comp.name 6-[2-(3,3-dimethylbut-1-yn-1-yl)phenyl]quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 RTH doub 277 n y C4 C1 RTH sing 278 n y C4 H4 RTH sing 279 n n C6 C5 RTH sing 280 n y C10 C5 RTH sing 281 n y N7 C6 RTH sing 282 n y C6 C3 RTH doub 283 n y N17 C8 RTH sing 284 n n C8 N7 RTH doub 285 n y C8 C9 RTH sing 286 n y C9 C10 RTH doub 287 n y C10 H10 RTH sing 288 n n C12 C13 RTH doub 289 n y C13 C14 RTH sing 290 n y C13 H13 RTH sing 291 n n C16 C15 RTH sing 292 n y C15 C14 RTH doub 293 n y C15 H15 RTH sing 294 n n C21 C20 RTH sing 295 n n C22 C20 RTH sing 296 n n C23 C20 RTH sing 297 n n C20 C19 RTH sing 298 n n C21 H21 RTH sing 299 n n C21 H21A RTH sing 300 n n C21 H21B RTH sing 301 n n C22 H22 RTH sing 302 n n C22 H22A RTH sing 303 n n C22 H22B RTH sing 304 n n C23 H23 RTH sing 305 n n C23 H23A RTH sing 306 n n C23 H23B RTH sing 307 n n C19 C18 RTH trip 308 n n C18 C12 RTH sing 309 n n C11 C12 RTH sing 310 n y C14 H14 RTH sing 311 n n C11 C16 RTH doub 312 n y C16 H16 RTH sing 313 n n C1 C11 RTH sing 314 n y C2 C1 RTH doub 315 n y C9 H9 RTH sing 316 n n N17 HN17 RTH sing 317 n n N17 HN1A RTH sing 318 n n C3 C2 RTH sing 319 n y C3 H3 RTH sing 320 n n C2 H2 RTH sing 321 n n # _atom_sites.entry_id 3RTH _atom_sites.fract_transf_matrix[1][1] 0.0098 _atom_sites.fract_transf_matrix[1][2] 0.005658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 393 1 IOD IOD . C 2 IOD A 1 394 2 IOD IOD . D 2 IOD A 1 395 3 IOD IOD . E 2 IOD A 1 396 4 IOD IOD . F 3 RTH A 1 397 1 RTH RTH . G 4 HOH A 1 398 1 HOH HOH . G 4 HOH A 2 399 2 HOH HOH . G 4 HOH A 3 400 3 HOH HOH . G 4 HOH A 4 401 4 HOH HOH . G 4 HOH A 5 402 5 HOH HOH . G 4 HOH A 6 403 6 HOH HOH . G 4 HOH A 7 404 7 HOH HOH . G 4 HOH A 8 405 8 HOH HOH . G 4 HOH A 9 406 9 HOH HOH . G 4 HOH A 10 407 10 HOH HOH . G 4 HOH A 11 408 11 HOH HOH . G 4 HOH A 12 409 12 HOH HOH . G 4 HOH A 13 410 13 HOH HOH . G 4 HOH A 14 411 14 HOH HOH . G 4 HOH A 15 412 15 HOH HOH . G 4 HOH A 16 413 16 HOH HOH . G 4 HOH A 17 414 17 HOH HOH . G 4 HOH A 18 415 18 HOH HOH . G 4 HOH A 19 416 19 HOH HOH . G 4 HOH A 20 417 20 HOH HOH . G 4 HOH A 21 418 21 HOH HOH . G 4 HOH A 22 419 22 HOH HOH . G 4 HOH A 23 420 23 HOH HOH . G 4 HOH A 24 421 24 HOH HOH . G 4 HOH A 25 422 25 HOH HOH . G 4 HOH A 26 423 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RTH . . . F 3 69.235 48.98 10.275 1 40.66 ? C4 RTH 397 A 1 HETATM 2 C C5 RTH . . . F 3 68.508 48.81 9.112 1 40.58 ? C5 RTH 397 A 1 HETATM 3 C C6 RTH . . . F 3 68.204 49.915 8.322 1 41.34 ? C6 RTH 397 A 1 HETATM 4 C C8 RTH . . . F 3 67.01 48.56 6.811 1 40.2 ? C8 RTH 397 A 1 HETATM 5 C C10 RTH . . . F 3 68.046 47.547 8.734 1 40.59 ? C10 RTH 397 A 1 HETATM 6 C C13 RTH . . . F 3 72.558 49.858 12.971 1 44.42 ? C13 RTH 397 A 1 HETATM 7 C C15 RTH . . . F 3 70.807 51.1 14.101 1 42.38 ? C15 RTH 397 A 1 HETATM 8 C C20 RTH . . . F 3 72.787 47.917 8.225 1 52.73 ? C20 RTH 397 A 1 HETATM 9 C C21 RTH . . . F 3 72.234 48.755 7.054 1 51.17 ? C21 RTH 397 A 1 HETATM 10 C C22 RTH . . . F 3 72.157 46.529 8.17 1 53.28 ? C22 RTH 397 A 1 HETATM 11 C C23 RTH . . . F 3 74.322 47.877 8.19 1 52.49 ? C23 RTH 397 A 1 HETATM 12 C C19 RTH . . . F 3 72.412 48.578 9.504 1 52.74 ? C19 RTH 397 A 1 HETATM 13 C C18 RTH . . . F 3 72.122 49.135 10.604 1 49.21 ? C18 RTH 397 A 1 HETATM 14 C C12 RTH . . . F 3 71.742 49.779 11.836 1 45.5 ? C12 RTH 397 A 1 HETATM 15 C C14 RTH . . . F 3 72.079 50.52 14.106 1 42.39 ? C14 RTH 397 A 1 HETATM 16 C C16 RTH . . . F 3 69.992 51.032 12.967 1 42.69 ? C16 RTH 397 A 1 HETATM 17 C C11 RTH . . . F 3 70.467 50.364 11.829 1 43.97 ? C11 RTH 397 A 1 HETATM 18 C C1 RTH . . . F 3 69.701 50.239 10.659 1 42.72 ? C1 RTH 397 A 1 HETATM 19 C C9 RTH . . . F 3 67.285 47.417 7.57 1 39.41 ? C9 RTH 397 A 1 HETATM 20 N N17 RTH . . . F 3 66.295 48.454 5.692 1 38.48 ? N17 RTH 397 A 1 HETATM 21 N N7 RTH . . . F 3 67.476 49.772 7.195 1 40.73 ? N7 RTH 397 A 1 HETATM 22 C C3 RTH . . . F 3 68.651 51.171 8.709 1 42.87 ? C3 RTH 397 A 1 HETATM 23 C C2 RTH . . . F 3 69.403 51.343 9.87 1 43.25 ? C2 RTH 397 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #