data_3RTM
#
_model_server_result.job_id            '_SSo9wsMwA3iKsJ9FZ9QHA' 
_model_server_result.datetime_utc      '2024-12-21 11:33:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rtm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":394}' 
#
_entry.id    3RTM 
#
_exptl.entry_id    3RTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RTM 
_cell.length_a            101.875 
_cell.length_b            101.875 
_cell.length_c            169.165 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3RTM 
_atom_sites.fract_transf_matrix[1][1]    0.009816 
_atom_sites.fract_transf_matrix[1][2]    0.005667 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 1502 1502 IOD IOD . 
C 2 IOD A 1 1503 1503 IOD IOD . 
D 2 IOD A 1 1505 1505 IOD IOD . 
E 3 GOL A 1 393 1 GOL GOL . 
F 3 GOL A 1 394 2 GOL GOL . 
G 4 RTM A 1 395 1 RTM RTM . 
H 5 HOH A 1 396 1 HOH HOH . 
H 5 HOH A 2 397 2 HOH HOH . 
H 5 HOH A 3 398 3 HOH HOH . 
H 5 HOH A 4 399 4 HOH HOH . 
H 5 HOH A 5 400 5 HOH HOH . 
H 5 HOH A 6 401 6 HOH HOH . 
H 5 HOH A 7 402 7 HOH HOH . 
H 5 HOH A 8 403 8 HOH HOH . 
H 5 HOH A 9 404 10 HOH HOH . 
H 5 HOH A 10 405 11 HOH HOH . 
H 5 HOH A 11 406 12 HOH HOH . 
H 5 HOH A 12 407 14 HOH HOH . 
H 5 HOH A 13 408 15 HOH HOH . 
H 5 HOH A 14 409 16 HOH HOH . 
H 5 HOH A 15 410 17 HOH HOH . 
H 5 HOH A 16 411 18 HOH HOH . 
H 5 HOH A 17 412 19 HOH HOH . 
H 5 HOH A 18 413 20 HOH HOH . 
H 5 HOH A 19 414 21 HOH HOH . 
H 5 HOH A 20 415 22 HOH HOH . 
H 5 HOH A 21 416 23 HOH HOH . 
H 5 HOH A 22 417 24 HOH HOH . 
H 5 HOH A 23 418 25 HOH HOH . 
H 5 HOH A 24 419 26 HOH HOH . 
H 5 HOH A 25 420 27 HOH HOH . 
H 5 HOH A 26 421 28 HOH HOH . 
H 5 HOH A 27 422 29 HOH HOH . 
H 5 HOH A 28 423 30 HOH HOH . 
H 5 HOH A 29 424 31 HOH HOH . 
H 5 HOH A 30 425 32 HOH HOH . 
H 5 HOH A 31 426 33 HOH HOH . 
H 5 HOH A 32 427 34 HOH HOH . 
H 5 HOH A 33 428 35 HOH HOH . 
H 5 HOH A 34 429 36 HOH HOH . 
H 5 HOH A 35 430 37 HOH HOH . 
H 5 HOH A 36 431 38 HOH HOH . 
H 5 HOH A 37 432 39 HOH HOH . 
H 5 HOH A 38 433 40 HOH HOH . 
H 5 HOH A 39 434 41 HOH HOH . 
H 5 HOH A 40 435 42 HOH HOH . 
H 5 HOH A 41 436 43 HOH HOH . 
H 5 HOH A 42 437 44 HOH HOH . 
H 5 HOH A 43 438 45 HOH HOH . 
H 5 HOH A 44 439 47 HOH HOH . 
H 5 HOH A 45 440 48 HOH HOH . 
H 5 HOH A 46 441 49 HOH HOH . 
H 5 HOH A 47 442 50 HOH HOH . 
H 5 HOH A 48 443 51 HOH HOH . 
H 5 HOH A 49 444 52 HOH HOH . 
H 5 HOH A 50 445 53 HOH HOH . 
H 5 HOH A 51 446 54 HOH HOH . 
H 5 HOH A 52 447 55 HOH HOH . 
H 5 HOH A 53 448 56 HOH HOH . 
H 5 HOH A 54 449 57 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 73.822 43.001 -2.879 1 72.85 ? C1 GOL 394 A 1 
HETATM 2 O O1 GOL . . . F 3 74.638 42.501 -3.923 1 73.94 ? O1 GOL 394 A 1 
HETATM 3 C C2 GOL . . . F 3 74.667 43.925 -2.008 1 71.98 ? C2 GOL 394 A 1 
HETATM 4 O O2 GOL . . . F 3 75.453 44.707 -2.867 1 73.01 ? O2 GOL 394 A 1 
HETATM 5 C C3 GOL . . . F 3 73.835 44.847 -1.127 1 71.15 ? C3 GOL 394 A 1 
HETATM 6 O O3 GOL . . . F 3 73.094 44.123 -0.167 1 71.12 ? O3 GOL 394 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#