data_3RU1
#
_model_server_result.job_id            C3Oz7Wpolm5mnvInnsVPtQ 
_model_server_result.datetime_utc      '2024-10-19 05:30:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ru1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":393}' 
#
_entry.id    3RU1 
#
_exptl.entry_id    3RU1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RU1 
_cell.length_a            102.237 
_cell.length_b            102.237 
_cell.length_c            170.741 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RU1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     3RU1 
_atom_sites.fract_transf_matrix[1][1]    0.009781 
_atom_sites.fract_transf_matrix[1][2]    0.005647 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005857 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 1502 1502 IOD IOD . 
C 2 IOD A 1 1503 1503 IOD IOD . 
D 2 IOD A 1 1504 1504 IOD IOD . 
E 2 IOD A 1 1505 1505 IOD IOD . 
F 3 GOL A 1 393 393 GOL GOL . 
G 3 GOL A 1 394 394 GOL GOL . 
H 3 GOL A 1 395 395 GOL GOL . 
I 3 GOL A 1 396 396 GOL GOL . 
J 3 GOL A 1 397 397 GOL GOL . 
K 4 3RU A 1 398 398 3RU 3RU . 
L 5 HOH A 1 400 400 HOH HOH . 
L 5 HOH A 2 401 401 HOH HOH . 
L 5 HOH A 3 402 402 HOH HOH . 
L 5 HOH A 4 403 403 HOH HOH . 
L 5 HOH A 5 404 404 HOH HOH . 
L 5 HOH A 6 405 405 HOH HOH . 
L 5 HOH A 7 406 406 HOH HOH . 
L 5 HOH A 8 407 407 HOH HOH . 
L 5 HOH A 9 408 408 HOH HOH . 
L 5 HOH A 10 409 409 HOH HOH . 
L 5 HOH A 11 410 410 HOH HOH . 
L 5 HOH A 12 411 411 HOH HOH . 
L 5 HOH A 13 412 412 HOH HOH . 
L 5 HOH A 14 413 413 HOH HOH . 
L 5 HOH A 15 414 414 HOH HOH . 
L 5 HOH A 16 415 415 HOH HOH . 
L 5 HOH A 17 416 416 HOH HOH . 
L 5 HOH A 18 417 417 HOH HOH . 
L 5 HOH A 19 418 418 HOH HOH . 
L 5 HOH A 20 419 419 HOH HOH . 
L 5 HOH A 21 420 420 HOH HOH . 
L 5 HOH A 22 421 421 HOH HOH . 
L 5 HOH A 23 422 422 HOH HOH . 
L 5 HOH A 24 423 423 HOH HOH . 
L 5 HOH A 25 424 424 HOH HOH . 
L 5 HOH A 26 425 425 HOH HOH . 
L 5 HOH A 27 426 426 HOH HOH . 
L 5 HOH A 28 427 427 HOH HOH . 
L 5 HOH A 29 428 428 HOH HOH . 
L 5 HOH A 30 429 429 HOH HOH . 
L 5 HOH A 31 430 430 HOH HOH . 
L 5 HOH A 32 431 431 HOH HOH . 
L 5 HOH A 33 432 432 HOH HOH . 
L 5 HOH A 34 433 433 HOH HOH . 
L 5 HOH A 35 434 434 HOH HOH . 
L 5 HOH A 36 435 435 HOH HOH . 
L 5 HOH A 37 436 436 HOH HOH . 
L 5 HOH A 38 437 437 HOH HOH . 
L 5 HOH A 39 438 438 HOH HOH . 
L 5 HOH A 40 439 439 HOH HOH . 
L 5 HOH A 41 440 440 HOH HOH . 
L 5 HOH A 42 441 441 HOH HOH . 
L 5 HOH A 43 442 442 HOH HOH . 
L 5 HOH A 44 443 443 HOH HOH . 
L 5 HOH A 45 444 444 HOH HOH . 
L 5 HOH A 46 445 445 HOH HOH . 
L 5 HOH A 47 446 446 HOH HOH . 
L 5 HOH A 48 447 447 HOH HOH . 
L 5 HOH A 49 448 448 HOH HOH . 
L 5 HOH A 50 449 449 HOH HOH . 
L 5 HOH A 51 450 450 HOH HOH . 
L 5 HOH A 52 451 451 HOH HOH . 
L 5 HOH A 53 452 452 HOH HOH . 
L 5 HOH A 54 453 453 HOH HOH . 
L 5 HOH A 55 454 454 HOH HOH . 
L 5 HOH A 56 455 455 HOH HOH . 
L 5 HOH A 57 456 456 HOH HOH . 
L 5 HOH A 58 457 457 HOH HOH . 
L 5 HOH A 59 458 458 HOH HOH . 
L 5 HOH A 60 459 459 HOH HOH . 
L 5 HOH A 61 460 460 HOH HOH . 
L 5 HOH A 62 461 461 HOH HOH . 
L 5 HOH A 63 462 462 HOH HOH . 
L 5 HOH A 64 463 463 HOH HOH . 
L 5 HOH A 65 464 464 HOH HOH . 
L 5 HOH A 66 465 465 HOH HOH . 
L 5 HOH A 67 466 466 HOH HOH . 
L 5 HOH A 68 467 467 HOH HOH . 
L 5 HOH A 69 468 468 HOH HOH . 
L 5 HOH A 70 469 469 HOH HOH . 
L 5 HOH A 71 470 470 HOH HOH . 
L 5 HOH A 72 471 471 HOH HOH . 
L 5 HOH A 73 472 472 HOH HOH . 
L 5 HOH A 74 473 473 HOH HOH . 
L 5 HOH A 75 474 474 HOH HOH . 
L 5 HOH A 76 475 475 HOH HOH . 
L 5 HOH A 77 476 476 HOH HOH . 
L 5 HOH A 78 477 477 HOH HOH . 
L 5 HOH A 79 478 478 HOH HOH . 
L 5 HOH A 80 479 479 HOH HOH . 
L 5 HOH A 81 480 480 HOH HOH . 
L 5 HOH A 82 481 481 HOH HOH . 
L 5 HOH A 83 482 482 HOH HOH . 
L 5 HOH A 84 483 483 HOH HOH . 
L 5 HOH A 85 484 484 HOH HOH . 
L 5 HOH A 86 485 485 HOH HOH . 
L 5 HOH A 87 486 486 HOH HOH . 
L 5 HOH A 88 487 487 HOH HOH . 
L 5 HOH A 89 488 488 HOH HOH . 
L 5 HOH A 90 489 489 HOH HOH . 
L 5 HOH A 91 490 490 HOH HOH . 
L 5 HOH A 92 491 491 HOH HOH . 
L 5 HOH A 93 492 492 HOH HOH . 
L 5 HOH A 94 493 493 HOH HOH . 
L 5 HOH A 95 494 494 HOH HOH . 
L 5 HOH A 96 495 495 HOH HOH . 
L 5 HOH A 97 496 496 HOH HOH . 
L 5 HOH A 98 497 497 HOH HOH . 
L 5 HOH A 99 498 498 HOH HOH . 
L 5 HOH A 100 499 499 HOH HOH . 
L 5 HOH A 101 500 500 HOH HOH . 
L 5 HOH A 102 501 501 HOH HOH . 
L 5 HOH A 103 502 502 HOH HOH . 
L 5 HOH A 104 503 503 HOH HOH . 
L 5 HOH A 105 504 504 HOH HOH . 
L 5 HOH A 106 505 505 HOH HOH . 
L 5 HOH A 107 506 506 HOH HOH . 
L 5 HOH A 108 507 507 HOH HOH . 
L 5 HOH A 109 508 508 HOH HOH . 
L 5 HOH A 110 509 509 HOH HOH . 
L 5 HOH A 111 510 510 HOH HOH . 
L 5 HOH A 112 511 511 HOH HOH . 
L 5 HOH A 113 512 512 HOH HOH . 
L 5 HOH A 114 513 513 HOH HOH . 
L 5 HOH A 115 514 514 HOH HOH . 
L 5 HOH A 116 515 515 HOH HOH . 
L 5 HOH A 117 516 516 HOH HOH . 
L 5 HOH A 118 517 517 HOH HOH . 
L 5 HOH A 119 518 518 HOH HOH . 
L 5 HOH A 120 519 519 HOH HOH . 
L 5 HOH A 121 520 520 HOH HOH . 
L 5 HOH A 122 521 521 HOH HOH . 
L 5 HOH A 123 522 522 HOH HOH . 
L 5 HOH A 124 523 523 HOH HOH . 
L 5 HOH A 125 524 524 HOH HOH . 
L 5 HOH A 126 525 525 HOH HOH . 
L 5 HOH A 127 526 526 HOH HOH . 
L 5 HOH A 128 527 527 HOH HOH . 
L 5 HOH A 129 528 528 HOH HOH . 
L 5 HOH A 130 529 529 HOH HOH . 
L 5 HOH A 131 530 530 HOH HOH . 
L 5 HOH A 132 531 531 HOH HOH . 
L 5 HOH A 133 532 532 HOH HOH . 
L 5 HOH A 134 533 533 HOH HOH . 
L 5 HOH A 135 534 534 HOH HOH . 
L 5 HOH A 136 535 535 HOH HOH . 
L 5 HOH A 137 536 536 HOH HOH . 
L 5 HOH A 138 537 537 HOH HOH . 
L 5 HOH A 139 538 538 HOH HOH . 
L 5 HOH A 140 539 539 HOH HOH . 
L 5 HOH A 141 540 540 HOH HOH . 
L 5 HOH A 142 541 541 HOH HOH . 
L 5 HOH A 143 542 542 HOH HOH . 
L 5 HOH A 144 543 543 HOH HOH . 
L 5 HOH A 145 544 544 HOH HOH . 
L 5 HOH A 146 545 545 HOH HOH . 
L 5 HOH A 147 546 546 HOH HOH . 
L 5 HOH A 148 547 547 HOH HOH . 
L 5 HOH A 149 548 548 HOH HOH . 
L 5 HOH A 150 549 549 HOH HOH . 
L 5 HOH A 151 550 550 HOH HOH . 
L 5 HOH A 152 551 551 HOH HOH . 
L 5 HOH A 153 552 552 HOH HOH . 
L 5 HOH A 154 553 553 HOH HOH . 
L 5 HOH A 155 554 554 HOH HOH . 
L 5 HOH A 156 555 555 HOH HOH . 
L 5 HOH A 157 556 556 HOH HOH . 
L 5 HOH A 158 557 557 HOH HOH . 
L 5 HOH A 159 558 558 HOH HOH . 
L 5 HOH A 160 559 559 HOH HOH . 
L 5 HOH A 161 560 560 HOH HOH . 
L 5 HOH A 162 561 561 HOH HOH . 
L 5 HOH A 163 562 562 HOH HOH . 
L 5 HOH A 164 563 563 HOH HOH . 
L 5 HOH A 165 564 564 HOH HOH . 
L 5 HOH A 166 565 565 HOH HOH . 
L 5 HOH A 167 566 566 HOH HOH . 
L 5 HOH A 168 567 567 HOH HOH . 
L 5 HOH A 169 568 568 HOH HOH . 
L 5 HOH A 170 569 569 HOH HOH . 
L 5 HOH A 171 570 570 HOH HOH . 
L 5 HOH A 172 571 571 HOH HOH . 
L 5 HOH A 173 572 572 HOH HOH . 
L 5 HOH A 174 573 573 HOH HOH . 
L 5 HOH A 175 574 574 HOH HOH . 
L 5 HOH A 176 575 575 HOH HOH . 
L 5 HOH A 177 576 576 HOH HOH . 
L 5 HOH A 178 577 577 HOH HOH . 
L 5 HOH A 179 578 578 HOH HOH . 
L 5 HOH A 180 579 579 HOH HOH . 
L 5 HOH A 181 580 580 HOH HOH . 
L 5 HOH A 182 581 581 HOH HOH . 
L 5 HOH A 183 582 582 HOH HOH . 
L 5 HOH A 184 583 583 HOH HOH . 
L 5 HOH A 185 584 584 HOH HOH . 
L 5 HOH A 186 585 585 HOH HOH . 
L 5 HOH A 187 586 586 HOH HOH . 
L 5 HOH A 188 587 587 HOH HOH . 
L 5 HOH A 189 588 588 HOH HOH . 
L 5 HOH A 190 589 589 HOH HOH . 
L 5 HOH A 191 590 590 HOH HOH . 
L 5 HOH A 192 591 591 HOH HOH . 
L 5 HOH A 193 592 592 HOH HOH . 
L 5 HOH A 194 593 593 HOH HOH . 
L 5 HOH A 195 594 594 HOH HOH . 
L 5 HOH A 196 595 595 HOH HOH . 
L 5 HOH A 197 596 596 HOH HOH . 
L 5 HOH A 198 597 597 HOH HOH . 
L 5 HOH A 199 598 598 HOH HOH . 
L 5 HOH A 200 599 599 HOH HOH . 
L 5 HOH A 201 600 600 HOH HOH . 
L 5 HOH A 202 601 601 HOH HOH . 
L 5 HOH A 203 602 602 HOH HOH . 
L 5 HOH A 204 603 603 HOH HOH . 
L 5 HOH A 205 604 604 HOH HOH . 
L 5 HOH A 206 605 605 HOH HOH . 
L 5 HOH A 207 606 606 HOH HOH . 
L 5 HOH A 208 607 607 HOH HOH . 
L 5 HOH A 209 608 608 HOH HOH . 
L 5 HOH A 210 609 609 HOH HOH . 
L 5 HOH A 211 610 610 HOH HOH . 
L 5 HOH A 212 611 611 HOH HOH . 
L 5 HOH A 213 612 612 HOH HOH . 
L 5 HOH A 214 613 613 HOH HOH . 
L 5 HOH A 215 614 614 HOH HOH . 
L 5 HOH A 216 615 615 HOH HOH . 
L 5 HOH A 217 616 616 HOH HOH . 
L 5 HOH A 218 617 617 HOH HOH . 
L 5 HOH A 219 618 618 HOH HOH . 
L 5 HOH A 220 619 619 HOH HOH . 
L 5 HOH A 221 620 620 HOH HOH . 
L 5 HOH A 222 621 621 HOH HOH . 
L 5 HOH A 223 622 622 HOH HOH . 
L 5 HOH A 224 623 623 HOH HOH . 
L 5 HOH A 225 624 624 HOH HOH . 
L 5 HOH A 226 625 625 HOH HOH . 
L 5 HOH A 227 626 626 HOH HOH . 
L 5 HOH A 228 627 627 HOH HOH . 
L 5 HOH A 229 628 628 HOH HOH . 
L 5 HOH A 230 629 629 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 73.327 44.399 -0.21 1 31.33 ? C1 GOL 393 A 1 
HETATM 2 O O1 GOL . . . F 3 72.072 44.258 0.398 1 29.61 ? O1 GOL 393 A 1 
HETATM 3 C C2 GOL . . . F 3 73.145 44.341 -1.719 1 33.04 ? C2 GOL 393 A 1 
HETATM 4 O O2 GOL . . . F 3 72.891 43.011 -2.153 1 33.37 ? O2 GOL 393 A 1 
HETATM 5 C C3 GOL . . . F 3 74.43 44.85 -2.347 1 32.61 ? C3 GOL 393 A 1 
HETATM 6 O O3 GOL . . . F 3 75.15 43.726 -2.794 1 33.46 ? O3 GOL 393 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#