data_3RU3 # _model_server_result.job_id -3mLZLsIJQJ0XEunUdyyVg _model_server_result.datetime_utc '2024-11-15 00:16:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ru3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":495}' # _entry.id 3RU3 # _exptl.entry_id 3RU3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 763.436 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RU3 _cell.length_a 120.943 _cell.length_b 120.943 _cell.length_c 154.802 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RU3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc3 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.498 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc8 D MG MG . A MG 492 1_555 F O1B ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 D MG MG . A MG 492 1_555 H O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? # _chem_comp.formula 'C21 H32 N7 O18 P3' _chem_comp.formula_weight 763.436 _chem_comp.id NPW _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P NPW doub 368 n n O3 P NPW sing 369 n n P O2A NPW sing 370 n n P O1 NPW sing 371 n n O1 HO1 NPW sing 372 n n O3 HO3 NPW sing 373 n n O5E PA NPW sing 374 n n OA3 PA NPW sing 375 n n PA OA2 NPW doub 376 n n PA OA1 NPW sing 377 n n OB1 PB NPW doub 378 n n OB2 PB NPW sing 379 n n PB OA3 NPW sing 380 n n PB O5B NPW sing 381 n n N9A C1A NPW sing 382 n n C1A C2A NPW sing 383 n n C1A O4D NPW sing 384 n n C1A H1A NPW sing 385 n n N1C C1B NPW sing 386 n n C2B C1B NPW sing 387 n n C1B O4B NPW sing 388 n n C1B H1B NPW sing 389 n n C6C N1C NPW sing 390 n n N1C C2C NPW sing 391 n n N1D C6D NPW doub 392 n y N1D C2D NPW sing 393 n y O2A C2A NPW sing 394 n n C2A C3A NPW sing 395 n n C2A H2A NPW sing 396 n n O2B C2B NPW sing 397 n n C2B C3B NPW sing 398 n n C2B H2B NPW sing 399 n n O2B HO2B NPW sing 400 n n C3C C2C NPW doub 401 n n C2C H2C NPW sing 402 n n C2D N3D NPW doub 403 n y C2D H2D NPW sing 404 n n C3A C4E NPW sing 405 n n C3A O3A NPW sing 406 n n C3A H3A NPW sing 407 n n O3A HO3A NPW sing 408 n n C3B C4B NPW sing 409 n n C3B O3B NPW sing 410 n n C3B H3B NPW sing 411 n n O3B HO3B NPW sing 412 n n C4C C3C NPW sing 413 n n C3C C7C NPW sing 414 n n N3D C4D NPW sing 415 n y O4B C4B NPW sing 416 n n C5B C4B NPW sing 417 n n C4B H4B NPW sing 418 n n C4C C5C NPW sing 419 n n C4C H4C NPW sing 420 n n C4C H4CA NPW sing 421 n n C5A C4D NPW doub 422 n y C4D N9A NPW sing 423 n y O4D C4E NPW sing 424 n n C4E C5E NPW sing 425 n n C4E H4E NPW sing 426 n n C6D C5A NPW sing 427 n y C5A N7A NPW sing 428 n y O5B C5B NPW sing 429 n n C5B H5B NPW sing 430 n n C5B H5BA NPW sing 431 n n C5C C6C NPW sing 432 n n C5C H5C NPW sing 433 n n C5C H5CA NPW sing 434 n n C5E O5E NPW sing 435 n n C5E H5E NPW sing 436 n n C5E H5EA NPW sing 437 n n O6C C6C NPW sing 438 n n C6C H6C NPW sing 439 n n O6C HO6C NPW sing 440 n n N6D C6D NPW sing 441 n n N6D HN6D NPW sing 442 n n N6D HN6A NPW sing 443 n n N7A C8A NPW doub 444 n y N7C C7C NPW sing 445 n n C7C O7C NPW doub 446 n n N7C HN7C NPW sing 447 n n N7C HN7A NPW sing 448 n n C8A N9A NPW sing 449 n y C8A H8A NPW sing 450 n n OA1 HOA1 NPW sing 451 n n OB2 HOB2 NPW sing 452 n n # _atom_sites.entry_id 3RU3 _atom_sites.fract_transf_matrix[1][1] 0.008268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00646 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 NDP A 1 493 3 NDP NDP . F 6 ATP A 1 494 4 ATP ATP . G 7 NPW A 1 495 5 NPW NPW . H 8 HOH A 1 496 1 HOH HOH . H 8 HOH A 2 497 2 HOH HOH . H 8 HOH A 3 498 3 HOH HOH . H 8 HOH A 4 499 4 HOH HOH . H 8 HOH A 5 500 5 HOH HOH . H 8 HOH A 6 501 7 HOH HOH . H 8 HOH A 7 502 8 HOH HOH . H 8 HOH A 8 503 9 HOH HOH . H 8 HOH A 9 504 10 HOH HOH . H 8 HOH A 10 505 11 HOH HOH . H 8 HOH A 11 506 12 HOH HOH . H 8 HOH A 12 507 13 HOH HOH . H 8 HOH A 13 508 14 HOH HOH . H 8 HOH A 14 509 15 HOH HOH . H 8 HOH A 15 510 16 HOH HOH . H 8 HOH A 16 511 17 HOH HOH . H 8 HOH A 17 512 18 HOH HOH . H 8 HOH A 18 513 19 HOH HOH . H 8 HOH A 19 514 20 HOH HOH . H 8 HOH A 20 515 21 HOH HOH . H 8 HOH A 21 516 22 HOH HOH . H 8 HOH A 22 517 23 HOH HOH . H 8 HOH A 23 518 24 HOH HOH . H 8 HOH A 24 519 25 HOH HOH . H 8 HOH A 25 520 26 HOH HOH . H 8 HOH A 26 521 27 HOH HOH . I 8 HOH B 1 8 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NPW . . . G 7 -25.807 15.226 -44.671 1 77.53 ? P NPW 495 A 1 HETATM 2 O O1 NPW . . . G 7 -24.609 14.701 -43.87 1 76.54 ? O1 NPW 495 A 1 HETATM 3 O O2 NPW . . . G 7 -26.479 16.419 -44.004 1 78.44 ? O2 NPW 495 A 1 HETATM 4 O O3 NPW . . . G 7 -25.505 15.278 -46.169 1 73.95 ? O3 NPW 495 A 1 HETATM 5 P PA NPW . . . G 7 -25.72 7.995 -47.91 1 48.55 ? PA NPW 495 A 1 HETATM 6 P PB NPW . . . G 7 -23.21 7.919 -46.457 1 43.23 ? PB NPW 495 A 1 HETATM 7 C C1A NPW . . . G 7 -27.812 11.87 -44.529 1 64.26 ? C1A NPW 495 A 1 HETATM 8 C C1B NPW . . . G 7 -19.437 4.808 -47.562 1 43.77 ? C1B NPW 495 A 1 HETATM 9 N N1C NPW . . . G 7 -18.513 5.106 -46.487 1 43.89 ? N1C NPW 495 A 1 HETATM 10 N N1D NPW . . . G 7 -28.545 9.926 -39.757 1 66.92 ? N1D NPW 495 A 1 HETATM 11 C C2A NPW . . . G 7 -26.722 12.795 -44.928 1 66.54 ? C2A NPW 495 A 1 HETATM 12 O O2A NPW . . . G 7 -27.048 14.151 -44.644 1 73.12 ? O2A NPW 495 A 1 HETATM 13 C C2B NPW . . . G 7 -20.668 4.006 -47.147 1 45.85 ? C2B NPW 495 A 1 HETATM 14 O O2B NPW . . . G 7 -20.397 2.618 -46.866 1 45.67 ? O2B NPW 495 A 1 HETATM 15 C C2C NPW . . . G 7 -17.28 4.998 -46.712 1 42.93 ? C2C NPW 495 A 1 HETATM 16 C C2D NPW . . . G 7 -29.414 10.65 -40.496 1 66.06 ? C2D NPW 495 A 1 HETATM 17 C C3A NPW . . . G 7 -26.429 12.445 -46.372 1 66.45 ? C3A NPW 495 A 1 HETATM 18 O O3A NPW . . . G 7 -26.431 13.608 -47.219 1 70.91 ? O3A NPW 495 A 1 HETATM 19 C C3B NPW . . . G 7 -21.545 4.243 -48.381 1 45.67 ? C3B NPW 495 A 1 HETATM 20 O O3B NPW . . . G 7 -21.163 3.388 -49.466 1 44.49 ? O3B NPW 495 A 1 HETATM 21 C C3C NPW . . . G 7 -16.325 5.165 -45.877 1 40.7 ? C3C NPW 495 A 1 HETATM 22 N N3D NPW . . . G 7 -29.127 11.119 -41.717 1 62.55 ? N3D NPW 495 A 1 HETATM 23 C C4B NPW . . . G 7 -21.191 5.677 -48.789 1 44.68 ? C4B NPW 495 A 1 HETATM 24 O O4B NPW . . . G 7 -20.018 6.013 -48.023 1 44.83 ? O4B NPW 495 A 1 HETATM 25 C C4C NPW . . . G 7 -16.654 5.87 -44.585 1 40.16 ? C4C NPW 495 A 1 HETATM 26 C C4D NPW . . . G 7 -27.937 10.867 -42.249 1 63.54 ? C4D NPW 495 A 1 HETATM 27 O O4D NPW . . . G 7 -28.045 10.903 -45.563 1 60.79 ? O4D NPW 495 A 1 HETATM 28 C C4E NPW . . . G 7 -27.441 11.368 -46.756 1 61.89 ? C4E NPW 495 A 1 HETATM 29 C C5A NPW . . . G 7 -26.917 10.104 -41.518 1 64.96 ? C5A NPW 495 A 1 HETATM 30 C C5B NPW . . . G 7 -22.306 6.718 -48.635 1 41.21 ? C5B NPW 495 A 1 HETATM 31 O O5B NPW . . . G 7 -22.645 6.718 -47.32 1 39.91 ? O5B NPW 495 A 1 HETATM 32 C C5C NPW . . . G 7 -18.087 6.442 -44.557 1 40.85 ? C5C NPW 495 A 1 HETATM 33 C C5E NPW . . . G 7 -26.718 10.288 -47.548 1 58.45 ? C5E NPW 495 A 1 HETATM 34 O O5E NPW . . . G 7 -26.746 8.936 -47.084 1 51.86 ? O5E NPW 495 A 1 HETATM 35 C C6C NPW . . . G 7 -19.093 5.525 -45.21 1 41.67 ? C6C NPW 495 A 1 HETATM 36 O O6C NPW . . . G 7 -19.299 4.37 -44.398 1 42.03 ? O6C NPW 495 A 1 HETATM 37 C C6D NPW . . . G 7 -27.3 9.619 -40.197 1 66.25 ? C6D NPW 495 A 1 HETATM 38 N N6D NPW . . . G 7 -26.383 8.899 -39.499 1 66.53 ? N6D NPW 495 A 1 HETATM 39 N N7A NPW . . . G 7 -25.765 9.973 -42.238 1 65.95 ? N7A NPW 495 A 1 HETATM 40 C C7C NPW . . . G 7 -14.934 4.656 -46.132 1 43.21 ? C7C NPW 495 A 1 HETATM 41 N N7C NPW . . . G 7 -13.94 4.932 -45.267 1 42.53 ? N7C NPW 495 A 1 HETATM 42 O O7C NPW . . . G 7 -14.642 3.971 -47.115 1 43.9 ? O7C NPW 495 A 1 HETATM 43 C C8A NPW . . . G 7 -25.955 10.642 -43.514 1 65.47 ? C8A NPW 495 A 1 HETATM 44 N N9A NPW . . . G 7 -27.31 11.151 -43.363 1 65.02 ? N9A NPW 495 A 1 HETATM 45 O OA1 NPW . . . G 7 -25.859 6.514 -47.731 1 49.79 ? OA1 NPW 495 A 1 HETATM 46 O OA2 NPW . . . G 7 -25.702 8.357 -49.358 1 52.75 ? OA2 NPW 495 A 1 HETATM 47 O OA3 NPW . . . G 7 -24.303 8.593 -47.418 1 45.69 ? OA3 NPW 495 A 1 HETATM 48 O OB1 NPW . . . G 7 -23.856 7.149 -45.294 1 43.94 ? OB1 NPW 495 A 1 HETATM 49 O OB2 NPW . . . G 7 -22.193 8.942 -46.049 1 40.08 ? OB2 NPW 495 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 49 #