data_3RU5
#
_model_server_result.job_id            o1aA4FBWOekVl8XXqkpS2A 
_model_server_result.datetime_utc      '2024-10-19 20:15:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ru5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":133}' 
#
_entry.id    3RU5 
#
_exptl.entry_id    3RU5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RU5 
_cell.length_a            77.798 
_cell.length_b            77.798 
_cell.length_c            37.629 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RU5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 B AG AG . A AG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc2 A NE2 HIS 15 A HIS 15 1_555 B AG AG . A AG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc3 A O GLN 41 A GLN 41 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc4 A OG1 THR 43 A THR 43 1_555 G NA NA . A NA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? 
metalc ? metalc5 A O GLY 49 A GLY 49 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? 
metalc ? metalc6 A OG1 THR 51 A THR 51 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc7 A O TYR 53 A TYR 53 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc8 A O SER 60 A SER 60 1_555 E NA NA . A NA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc9 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc10 A OD2 ASP 66 A ASP 66 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc11 A OG1 THR 69 A THR 69 1_555 H NA NA . A NA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? 
metalc ? metalc12 A OG SER 72 A SER 72 1_555 E NA NA . A NA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc13 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc14 A OD2 ASP 87 A ASP 87 1_555 B AG AG . A AG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc15 A OG SER 91 A SER 91 1_555 F NA NA . A NA 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc16 D O3 NO3 . A NO3 132 1_555 E NA NA . A NA 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc17 E NA NA . A NA 133 1_555 P O HOH . A HOH 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc18 I NA NA . A NA 137 1_555 P O HOH . A HOH 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
metalc ? metalc19 B AG AG . A AG 300 1_555 C O3 NO3 . A NO3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RU5 
_atom_sites.fract_transf_matrix[1][1]    0.012854 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012854 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 AG A 1 300 300 AG AG . 
C 3 NO3 A 1 301 301 NO3 NO3 . 
D 3 NO3 A 1 132 132 NO3 NO3 . 
E 4 NA A 1 133 133 NA NA . 
F 4 NA A 1 134 134 NA NA . 
G 4 NA A 1 135 135 NA NA . 
H 4 NA A 1 136 136 NA NA . 
I 4 NA A 1 137 137 NA NA . 
J 5 EDO A 1 138 138 EDO EDO . 
K 3 NO3 A 1 139 139 NO3 NO3 . 
L 3 NO3 A 1 140 140 NO3 NO3 . 
M 5 EDO A 1 141 141 EDO EDO . 
N 3 NO3 A 1 142 142 NO3 NO3 . 
O 3 NO3 A 1 143 143 NO3 NO3 . 
P 6 HOH A 1 144 144 HOH HOH . 
P 6 HOH A 2 145 145 HOH HOH . 
P 6 HOH A 3 146 146 HOH HOH . 
P 6 HOH A 4 147 147 HOH HOH . 
P 6 HOH A 5 148 148 HOH HOH . 
P 6 HOH A 6 149 149 HOH HOH . 
P 6 HOH A 7 150 150 HOH HOH . 
P 6 HOH A 8 151 151 HOH HOH . 
P 6 HOH A 9 152 152 HOH HOH . 
P 6 HOH A 10 153 153 HOH HOH . 
P 6 HOH A 11 154 154 HOH HOH . 
P 6 HOH A 12 155 155 HOH HOH . 
P 6 HOH A 13 156 156 HOH HOH . 
P 6 HOH A 14 157 157 HOH HOH . 
P 6 HOH A 15 158 158 HOH HOH . 
P 6 HOH A 16 159 159 HOH HOH . 
P 6 HOH A 17 160 160 HOH HOH . 
P 6 HOH A 18 161 161 HOH HOH . 
P 6 HOH A 19 162 162 HOH HOH . 
P 6 HOH A 20 163 163 HOH HOH . 
P 6 HOH A 21 164 164 HOH HOH . 
P 6 HOH A 22 165 165 HOH HOH . 
P 6 HOH A 23 166 166 HOH HOH . 
P 6 HOH A 24 167 167 HOH HOH . 
P 6 HOH A 25 168 168 HOH HOH . 
P 6 HOH A 26 169 169 HOH HOH . 
P 6 HOH A 27 170 170 HOH HOH . 
P 6 HOH A 28 171 171 HOH HOH . 
P 6 HOH A 29 172 172 HOH HOH . 
P 6 HOH A 30 173 173 HOH HOH . 
P 6 HOH A 31 174 174 HOH HOH . 
P 6 HOH A 32 175 175 HOH HOH . 
P 6 HOH A 33 176 176 HOH HOH . 
P 6 HOH A 34 177 177 HOH HOH . 
P 6 HOH A 35 178 178 HOH HOH . 
P 6 HOH A 36 179 179 HOH HOH . 
P 6 HOH A 37 180 180 HOH HOH . 
P 6 HOH A 38 181 181 HOH HOH . 
P 6 HOH A 39 182 182 HOH HOH . 
P 6 HOH A 40 183 183 HOH HOH . 
P 6 HOH A 41 184 184 HOH HOH . 
P 6 HOH A 42 185 185 HOH HOH . 
P 6 HOH A 43 186 186 HOH HOH . 
P 6 HOH A 44 187 187 HOH HOH . 
P 6 HOH A 45 188 188 HOH HOH . 
P 6 HOH A 46 189 189 HOH HOH . 
P 6 HOH A 47 190 190 HOH HOH . 
P 6 HOH A 48 191 191 HOH HOH . 
P 6 HOH A 49 192 192 HOH HOH . 
P 6 HOH A 50 193 193 HOH HOH . 
P 6 HOH A 51 194 194 HOH HOH . 
P 6 HOH A 52 195 195 HOH HOH . 
P 6 HOH A 53 196 196 HOH HOH . 
P 6 HOH A 54 197 197 HOH HOH . 
P 6 HOH A 55 198 198 HOH HOH . 
P 6 HOH A 56 199 199 HOH HOH . 
P 6 HOH A 57 200 200 HOH HOH . 
P 6 HOH A 58 201 201 HOH HOH . 
P 6 HOH A 59 202 202 HOH HOH . 
P 6 HOH A 60 203 203 HOH HOH . 
P 6 HOH A 61 204 204 HOH HOH . 
P 6 HOH A 62 205 205 HOH HOH . 
P 6 HOH A 63 206 206 HOH HOH . 
P 6 HOH A 64 207 207 HOH HOH . 
P 6 HOH A 65 208 208 HOH HOH . 
P 6 HOH A 66 209 209 HOH HOH . 
P 6 HOH A 67 210 210 HOH HOH . 
P 6 HOH A 68 211 211 HOH HOH . 
P 6 HOH A 69 212 212 HOH HOH . 
P 6 HOH A 70 213 213 HOH HOH . 
P 6 HOH A 71 214 214 HOH HOH . 
P 6 HOH A 72 215 215 HOH HOH . 
P 6 HOH A 73 216 216 HOH HOH . 
P 6 HOH A 74 217 217 HOH HOH . 
P 6 HOH A 75 218 218 HOH HOH . 
P 6 HOH A 76 219 219 HOH HOH . 
P 6 HOH A 77 220 220 HOH HOH . 
P 6 HOH A 78 221 221 HOH HOH . 
P 6 HOH A 79 222 222 HOH HOH . 
P 6 HOH A 80 223 223 HOH HOH . 
P 6 HOH A 81 224 224 HOH HOH . 
P 6 HOH A 82 225 225 HOH HOH . 
P 6 HOH A 83 226 226 HOH HOH . 
P 6 HOH A 84 227 227 HOH HOH . 
P 6 HOH A 85 228 228 HOH HOH . 
P 6 HOH A 86 229 229 HOH HOH . 
P 6 HOH A 87 230 230 HOH HOH . 
P 6 HOH A 88 231 231 HOH HOH . 
P 6 HOH A 89 232 232 HOH HOH . 
P 6 HOH A 90 233 233 HOH HOH . 
P 6 HOH A 91 234 234 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               7.479 
_atom_site.Cartn_y               -14.455 
_atom_site.Cartn_z               -3.587 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        13.83 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           133 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#