data_3RU7 # _model_server_result.job_id sUTzPDAiAfG3FDGF0Vdeog _model_server_result.datetime_utc '2025-02-05 09:44:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ru7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":349}' # _entry.id 3RU7 # _exptl.entry_id 3RU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RU7 _cell.length_a 77.73 _cell.length_b 77.73 _cell.length_c 224.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,N,O,P,Q,U,W 1 1 B,J,K,L,M,V 2 1 D,R,S,T,X 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 38.865 67.316155 74.846667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 N N N ? 2 S N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3RU7 _atom_sites.fract_transf_matrix[1][1] 0.012865 _atom_sites.fract_transf_matrix[1][2] 0.007428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 349 349 NAD NAD . F 3 GLY A 1 353 353 GLY GLY . G 4 NA A 1 351 351 NA NA . H 4 NA A 1 352 352 NA NA . I 5 UNL A 1 350 350 UNL UNL . J 2 NAD B 1 349 349 NAD NAD . K 5 UNL B 1 350 350 UNL UNL . L 4 NA B 1 351 351 NA NA . M 6 SO4 B 1 352 352 SO4 SO4 . N 2 NAD C 1 349 349 NAD NAD . O 5 UNL C 1 350 350 UNL UNL . P 6 SO4 C 1 351 351 SO4 SO4 . Q 4 NA C 1 352 352 NA NA . R 3 GLY D 1 351 351 GLY GLY . S 2 NAD D 1 349 349 NAD NAD . T 5 UNL D 1 350 350 UNL UNL . U 7 HOH A 1 354 354 HOH HOH . U 7 HOH A 2 355 355 HOH HOH . U 7 HOH A 3 356 356 HOH HOH . U 7 HOH A 4 357 357 HOH HOH . U 7 HOH A 5 358 358 HOH HOH . U 7 HOH A 6 359 359 HOH HOH . U 7 HOH A 7 360 360 HOH HOH . U 7 HOH A 8 361 361 HOH HOH . U 7 HOH A 9 362 362 HOH HOH . U 7 HOH A 10 363 363 HOH HOH . U 7 HOH A 11 364 364 HOH HOH . U 7 HOH A 12 365 365 HOH HOH . U 7 HOH A 13 366 366 HOH HOH . U 7 HOH A 14 367 367 HOH HOH . U 7 HOH A 15 368 368 HOH HOH . U 7 HOH A 16 369 369 HOH HOH . U 7 HOH A 17 370 370 HOH HOH . U 7 HOH A 18 371 371 HOH HOH . U 7 HOH A 19 372 372 HOH HOH . U 7 HOH A 20 373 373 HOH HOH . U 7 HOH A 21 374 374 HOH HOH . U 7 HOH A 22 375 375 HOH HOH . U 7 HOH A 23 376 376 HOH HOH . U 7 HOH A 24 377 377 HOH HOH . U 7 HOH A 25 378 378 HOH HOH . U 7 HOH A 26 379 379 HOH HOH . U 7 HOH A 27 380 380 HOH HOH . V 7 HOH B 1 353 353 HOH HOH . V 7 HOH B 2 354 354 HOH HOH . V 7 HOH B 3 355 355 HOH HOH . V 7 HOH B 4 356 356 HOH HOH . V 7 HOH B 5 357 357 HOH HOH . V 7 HOH B 6 358 358 HOH HOH . V 7 HOH B 7 359 359 HOH HOH . V 7 HOH B 8 360 360 HOH HOH . V 7 HOH B 9 361 361 HOH HOH . V 7 HOH B 10 362 362 HOH HOH . V 7 HOH B 11 363 363 HOH HOH . V 7 HOH B 12 364 364 HOH HOH . V 7 HOH B 13 365 365 HOH HOH . V 7 HOH B 14 366 366 HOH HOH . V 7 HOH B 15 367 367 HOH HOH . V 7 HOH B 16 368 368 HOH HOH . V 7 HOH B 17 369 369 HOH HOH . V 7 HOH B 18 370 370 HOH HOH . V 7 HOH B 19 371 371 HOH HOH . V 7 HOH B 20 372 372 HOH HOH . V 7 HOH B 21 373 373 HOH HOH . V 7 HOH B 22 374 374 HOH HOH . V 7 HOH B 23 375 375 HOH HOH . V 7 HOH B 24 376 376 HOH HOH . V 7 HOH B 25 377 377 HOH HOH . V 7 HOH B 26 378 378 HOH HOH . V 7 HOH B 27 379 379 HOH HOH . V 7 HOH B 28 380 380 HOH HOH . V 7 HOH B 29 381 381 HOH HOH . W 7 HOH C 1 353 353 HOH HOH . W 7 HOH C 2 354 354 HOH HOH . W 7 HOH C 3 355 355 HOH HOH . W 7 HOH C 4 356 356 HOH HOH . W 7 HOH C 5 357 357 HOH HOH . W 7 HOH C 6 358 358 HOH HOH . W 7 HOH C 7 359 359 HOH HOH . W 7 HOH C 8 360 360 HOH HOH . W 7 HOH C 9 361 361 HOH HOH . W 7 HOH C 10 362 362 HOH HOH . W 7 HOH C 11 363 363 HOH HOH . W 7 HOH C 12 364 364 HOH HOH . W 7 HOH C 13 365 365 HOH HOH . W 7 HOH C 14 366 366 HOH HOH . W 7 HOH C 15 367 367 HOH HOH . W 7 HOH C 16 368 368 HOH HOH . W 7 HOH C 17 369 369 HOH HOH . W 7 HOH C 18 370 370 HOH HOH . X 7 HOH D 1 352 352 HOH HOH . X 7 HOH D 2 353 353 HOH HOH . X 7 HOH D 3 354 354 HOH HOH . X 7 HOH D 4 355 355 HOH HOH . X 7 HOH D 5 356 356 HOH HOH . X 7 HOH D 6 357 357 HOH HOH . X 7 HOH D 7 358 358 HOH HOH . X 7 HOH D 8 359 359 HOH HOH . X 7 HOH D 9 360 360 HOH HOH . X 7 HOH D 10 361 361 HOH HOH . X 7 HOH D 11 362 362 HOH HOH . X 7 HOH D 12 363 363 HOH HOH . X 7 HOH D 13 364 364 HOH HOH . X 7 HOH D 14 365 365 HOH HOH . X 7 HOH D 15 366 366 HOH HOH . X 7 HOH D 16 367 367 HOH HOH . X 7 HOH D 17 368 368 HOH HOH . X 7 HOH D 18 369 369 HOH HOH . X 7 HOH D 19 370 370 HOH HOH . X 7 HOH D 20 371 371 HOH HOH . X 7 HOH D 21 372 372 HOH HOH . X 7 HOH D 22 373 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . S 2 55.045 -6.388 -22.802 1 30.23 ? PA NAD 349 D 1 HETATM 2 O O1A NAD . . . S 2 54.672 -7.042 -21.523 1 34.23 ? O1A NAD 349 D 1 HETATM 3 O O2A NAD . . . S 2 56.427 -6.495 -23.307 1 28.51 ? O2A NAD 349 D 1 HETATM 4 O O5B NAD . . . S 2 53.976 -6.897 -23.876 1 27.94 ? O5B NAD 349 D 1 HETATM 5 C C5B NAD . . . S 2 54.369 -7.322 -25.146 1 26.76 ? C5B NAD 349 D 1 HETATM 6 C C4B NAD . . . S 2 53.922 -8.755 -25.347 1 28.26 ? C4B NAD 349 D 1 HETATM 7 O O4B NAD . . . S 2 53.935 -9.016 -26.793 1 28.89 ? O4B NAD 349 D 1 HETATM 8 C C3B NAD . . . S 2 54.927 -9.715 -24.694 1 29.05 ? C3B NAD 349 D 1 HETATM 9 O O3B NAD . . . S 2 54.256 -10.829 -24.066 1 31.04 ? O3B NAD 349 D 1 HETATM 10 C C2B NAD . . . S 2 55.747 -10.187 -25.886 1 28.68 ? C2B NAD 349 D 1 HETATM 11 O O2B NAD . . . S 2 56.276 -11.49 -25.624 1 31.88 ? O2B NAD 349 D 1 HETATM 12 C C1B NAD . . . S 2 54.706 -10.2 -27.02 1 28.16 ? C1B NAD 349 D 1 HETATM 13 N N9A NAD . . . S 2 55.356 -10.145 -28.363 1 27.67 ? N9A NAD 349 D 1 HETATM 14 C C8A NAD . . . S 2 56.351 -9.336 -28.733 1 25.75 ? C8A NAD 349 D 1 HETATM 15 N N7A NAD . . . S 2 56.683 -9.608 -29.994 1 26.27 ? N7A NAD 349 D 1 HETATM 16 C C5A NAD . . . S 2 55.902 -10.582 -30.439 1 28.49 ? C5A NAD 349 D 1 HETATM 17 C C6A NAD . . . S 2 55.78 -11.26 -31.656 1 32 ? C6A NAD 349 D 1 HETATM 18 N N6A NAD . . . S 2 56.565 -10.964 -32.687 1 33.41 ? N6A NAD 349 D 1 HETATM 19 N N1A NAD . . . S 2 54.858 -12.23 -31.788 1 34.09 ? N1A NAD 349 D 1 HETATM 20 C C2A NAD . . . S 2 54.071 -12.541 -30.763 1 34.38 ? C2A NAD 349 D 1 HETATM 21 N N3A NAD . . . S 2 54.161 -11.914 -29.595 1 31.8 ? N3A NAD 349 D 1 HETATM 22 C C4A NAD . . . S 2 55.055 -10.925 -29.404 1 29.08 ? C4A NAD 349 D 1 HETATM 23 O O3 NAD . . . S 2 54.759 -4.848 -22.654 1 29.65 ? O3 NAD 349 D 1 HETATM 24 P PN NAD . . . S 2 53.339 -4.203 -22.418 1 30.32 ? PN NAD 349 D 1 HETATM 25 O O1N NAD . . . S 2 52.343 -5.229 -22.014 1 31.95 ? O1N NAD 349 D 1 HETATM 26 O O2N NAD . . . S 2 53.568 -3.017 -21.548 1 32.59 ? O2N NAD 349 D 1 HETATM 27 O O5D NAD . . . S 2 53.006 -3.706 -23.878 1 28.66 ? O5D NAD 349 D 1 HETATM 28 C C5D NAD . . . S 2 51.797 -4.088 -24.505 1 31.09 ? C5D NAD 349 D 1 HETATM 29 C C4D NAD . . . S 2 51.427 -3.103 -25.602 1 34 ? C4D NAD 349 D 1 HETATM 30 O O4D NAD . . . S 2 51.27 -1.75 -25.063 1 36.76 ? O4D NAD 349 D 1 HETATM 31 C C3D NAD . . . S 2 52.561 -3.039 -26.625 1 33.53 ? C3D NAD 349 D 1 HETATM 32 O O3D NAD . . . S 2 51.977 -3.026 -27.933 1 36.26 ? O3D NAD 349 D 1 HETATM 33 C C2D NAD . . . S 2 53.228 -1.707 -26.296 1 35.08 ? C2D NAD 349 D 1 HETATM 34 O O2D NAD . . . S 2 53.881 -1.186 -27.445 1 37.64 ? O2D NAD 349 D 1 HETATM 35 C C1D NAD . . . S 2 52.024 -0.852 -25.903 1 37.37 ? C1D NAD 349 D 1 HETATM 36 N N1N NAD . . . S 2 52.436 0.311 -25.093 1 39.58 ? N1N NAD 349 D 1 HETATM 37 C C2N NAD . . . S 2 52.699 0.148 -23.718 1 39.1 ? C2N NAD 349 D 1 HETATM 38 C C3N NAD . . . S 2 53.099 1.242 -22.95 1 42.96 ? C3N NAD 349 D 1 HETATM 39 C C7N NAD . . . S 2 53.375 1.041 -21.453 1 44.87 ? C7N NAD 349 D 1 HETATM 40 O O7N NAD . . . S 2 53.224 1.963 -20.649 1 48.79 ? O7N NAD 349 D 1 HETATM 41 N N7N NAD . . . S 2 53.762 -0.193 -21.107 1 44.09 ? N7N NAD 349 D 1 HETATM 42 C C4N NAD . . . S 2 53.234 2.507 -23.545 1 46.21 ? C4N NAD 349 D 1 HETATM 43 C C5N NAD . . . S 2 52.978 2.681 -24.909 1 46.99 ? C5N NAD 349 D 1 HETATM 44 C C6N NAD . . . S 2 52.578 1.588 -25.688 1 43.57 ? C6N NAD 349 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #