data_3RU7 # _model_server_result.job_id 4QlJMYR6K3w76Bt63zkUww _model_server_result.datetime_utc '2025-02-05 10:01:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ru7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":353}' # _entry.id 3RU7 # _exptl.entry_id 3RU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RU7 _cell.length_a 77.73 _cell.length_b 77.73 _cell.length_c 224.54 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,N,O,P,Q,U,W 1 1 B,J,K,L,M,V 2 1 D,R,S,T,X 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z+1/3 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 38.865 67.316155 74.846667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 R N N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 3RU7 _atom_sites.fract_transf_matrix[1][1] 0.012865 _atom_sites.fract_transf_matrix[1][2] 0.007428 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014855 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 349 349 NAD NAD . F 3 GLY A 1 353 353 GLY GLY . G 4 NA A 1 351 351 NA NA . H 4 NA A 1 352 352 NA NA . I 5 UNL A 1 350 350 UNL UNL . J 2 NAD B 1 349 349 NAD NAD . K 5 UNL B 1 350 350 UNL UNL . L 4 NA B 1 351 351 NA NA . M 6 SO4 B 1 352 352 SO4 SO4 . N 2 NAD C 1 349 349 NAD NAD . O 5 UNL C 1 350 350 UNL UNL . P 6 SO4 C 1 351 351 SO4 SO4 . Q 4 NA C 1 352 352 NA NA . R 3 GLY D 1 351 351 GLY GLY . S 2 NAD D 1 349 349 NAD NAD . T 5 UNL D 1 350 350 UNL UNL . U 7 HOH A 1 354 354 HOH HOH . U 7 HOH A 2 355 355 HOH HOH . U 7 HOH A 3 356 356 HOH HOH . U 7 HOH A 4 357 357 HOH HOH . U 7 HOH A 5 358 358 HOH HOH . U 7 HOH A 6 359 359 HOH HOH . U 7 HOH A 7 360 360 HOH HOH . U 7 HOH A 8 361 361 HOH HOH . U 7 HOH A 9 362 362 HOH HOH . U 7 HOH A 10 363 363 HOH HOH . U 7 HOH A 11 364 364 HOH HOH . U 7 HOH A 12 365 365 HOH HOH . U 7 HOH A 13 366 366 HOH HOH . U 7 HOH A 14 367 367 HOH HOH . U 7 HOH A 15 368 368 HOH HOH . U 7 HOH A 16 369 369 HOH HOH . U 7 HOH A 17 370 370 HOH HOH . U 7 HOH A 18 371 371 HOH HOH . U 7 HOH A 19 372 372 HOH HOH . U 7 HOH A 20 373 373 HOH HOH . U 7 HOH A 21 374 374 HOH HOH . U 7 HOH A 22 375 375 HOH HOH . U 7 HOH A 23 376 376 HOH HOH . U 7 HOH A 24 377 377 HOH HOH . U 7 HOH A 25 378 378 HOH HOH . U 7 HOH A 26 379 379 HOH HOH . U 7 HOH A 27 380 380 HOH HOH . V 7 HOH B 1 353 353 HOH HOH . V 7 HOH B 2 354 354 HOH HOH . V 7 HOH B 3 355 355 HOH HOH . V 7 HOH B 4 356 356 HOH HOH . V 7 HOH B 5 357 357 HOH HOH . V 7 HOH B 6 358 358 HOH HOH . V 7 HOH B 7 359 359 HOH HOH . V 7 HOH B 8 360 360 HOH HOH . V 7 HOH B 9 361 361 HOH HOH . V 7 HOH B 10 362 362 HOH HOH . V 7 HOH B 11 363 363 HOH HOH . V 7 HOH B 12 364 364 HOH HOH . V 7 HOH B 13 365 365 HOH HOH . V 7 HOH B 14 366 366 HOH HOH . V 7 HOH B 15 367 367 HOH HOH . V 7 HOH B 16 368 368 HOH HOH . V 7 HOH B 17 369 369 HOH HOH . V 7 HOH B 18 370 370 HOH HOH . V 7 HOH B 19 371 371 HOH HOH . V 7 HOH B 20 372 372 HOH HOH . V 7 HOH B 21 373 373 HOH HOH . V 7 HOH B 22 374 374 HOH HOH . V 7 HOH B 23 375 375 HOH HOH . V 7 HOH B 24 376 376 HOH HOH . V 7 HOH B 25 377 377 HOH HOH . V 7 HOH B 26 378 378 HOH HOH . V 7 HOH B 27 379 379 HOH HOH . V 7 HOH B 28 380 380 HOH HOH . V 7 HOH B 29 381 381 HOH HOH . W 7 HOH C 1 353 353 HOH HOH . W 7 HOH C 2 354 354 HOH HOH . W 7 HOH C 3 355 355 HOH HOH . W 7 HOH C 4 356 356 HOH HOH . W 7 HOH C 5 357 357 HOH HOH . W 7 HOH C 6 358 358 HOH HOH . W 7 HOH C 7 359 359 HOH HOH . W 7 HOH C 8 360 360 HOH HOH . W 7 HOH C 9 361 361 HOH HOH . W 7 HOH C 10 362 362 HOH HOH . W 7 HOH C 11 363 363 HOH HOH . W 7 HOH C 12 364 364 HOH HOH . W 7 HOH C 13 365 365 HOH HOH . W 7 HOH C 14 366 366 HOH HOH . W 7 HOH C 15 367 367 HOH HOH . W 7 HOH C 16 368 368 HOH HOH . W 7 HOH C 17 369 369 HOH HOH . W 7 HOH C 18 370 370 HOH HOH . X 7 HOH D 1 352 352 HOH HOH . X 7 HOH D 2 353 353 HOH HOH . X 7 HOH D 3 354 354 HOH HOH . X 7 HOH D 4 355 355 HOH HOH . X 7 HOH D 5 356 356 HOH HOH . X 7 HOH D 6 357 357 HOH HOH . X 7 HOH D 7 358 358 HOH HOH . X 7 HOH D 8 359 359 HOH HOH . X 7 HOH D 9 360 360 HOH HOH . X 7 HOH D 10 361 361 HOH HOH . X 7 HOH D 11 362 362 HOH HOH . X 7 HOH D 12 363 363 HOH HOH . X 7 HOH D 13 364 364 HOH HOH . X 7 HOH D 14 365 365 HOH HOH . X 7 HOH D 15 366 366 HOH HOH . X 7 HOH D 16 367 367 HOH HOH . X 7 HOH D 17 368 368 HOH HOH . X 7 HOH D 18 369 369 HOH HOH . X 7 HOH D 19 370 370 HOH HOH . X 7 HOH D 20 371 371 HOH HOH . X 7 HOH D 21 372 372 HOH HOH . X 7 HOH D 22 373 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . F 3 35.611 -33.422 -0.923 1 46.08 ? N GLY 353 A 1 HETATM 2 C CA GLY . . . F 3 36.491 -32.675 -1.868 1 46.22 ? CA GLY 353 A 1 HETATM 3 C C GLY . . . F 3 37.045 -33.556 -2.97 1 46.43 ? C GLY 353 A 1 HETATM 4 O O GLY . . . F 3 36.347 -34.418 -3.509 1 46.63 ? O GLY 353 A 1 HETATM 5 O OXT GLY . . . F 3 38.206 -33.43 -3.357 1 46.5 ? OXT GLY 353 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #