data_3RU9 # _model_server_result.job_id PQGBErIvlDmuel9A9TzZ3A _model_server_result.datetime_utc '2025-02-24 14:07:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ru9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":345}' # _entry.id 3RU9 # _exptl.entry_id 3RU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RU9 _cell.length_a 77.41 _cell.length_b 77.41 _cell.length_c 224.887 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,K,L,M,Q,S 1 1 B,I,J,R 2 1 D,N,O,P,T 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_664 -y+1,x-y+1,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 38.705 67.039027 -74.962333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 N N N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 3RU9 _atom_sites.fract_transf_matrix[1][1] 0.012918 _atom_sites.fract_transf_matrix[1][2] 0.007458 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 343 343 NAD NAD . F 3 SO4 A 1 345 345 SO4 SO4 . G 4 UNL A 1 344 344 UNL UNL . H 3 SO4 A 1 346 346 SO4 SO4 . I 2 NAD B 1 343 343 NAD NAD . J 4 UNL B 1 344 344 UNL UNL . K 5 GLY C 1 345 345 GLY GLY . L 2 NAD C 1 343 343 NAD NAD . M 4 UNL C 1 344 344 UNL UNL . N 5 GLY D 1 345 345 GLY GLY . O 2 NAD D 1 343 343 NAD NAD . P 4 UNL D 1 344 344 UNL UNL . Q 6 HOH A 1 347 347 HOH HOH . Q 6 HOH A 2 348 348 HOH HOH . Q 6 HOH A 3 349 349 HOH HOH . Q 6 HOH A 4 350 350 HOH HOH . Q 6 HOH A 5 351 351 HOH HOH . Q 6 HOH A 6 352 352 HOH HOH . Q 6 HOH A 7 353 353 HOH HOH . Q 6 HOH A 8 354 354 HOH HOH . Q 6 HOH A 9 355 355 HOH HOH . Q 6 HOH A 10 356 356 HOH HOH . Q 6 HOH A 11 357 357 HOH HOH . Q 6 HOH A 12 358 358 HOH HOH . Q 6 HOH A 13 359 359 HOH HOH . Q 6 HOH A 14 360 360 HOH HOH . Q 6 HOH A 15 361 361 HOH HOH . Q 6 HOH A 16 362 362 HOH HOH . Q 6 HOH A 17 363 363 HOH HOH . Q 6 HOH A 18 364 364 HOH HOH . Q 6 HOH A 19 365 365 HOH HOH . Q 6 HOH A 20 366 366 HOH HOH . Q 6 HOH A 21 367 367 HOH HOH . Q 6 HOH A 22 368 368 HOH HOH . Q 6 HOH A 23 369 369 HOH HOH . Q 6 HOH A 24 370 370 HOH HOH . Q 6 HOH A 25 371 371 HOH HOH . Q 6 HOH A 26 372 372 HOH HOH . Q 6 HOH A 27 373 373 HOH HOH . Q 6 HOH A 28 374 374 HOH HOH . Q 6 HOH A 29 375 375 HOH HOH . Q 6 HOH A 30 376 376 HOH HOH . Q 6 HOH A 31 377 377 HOH HOH . Q 6 HOH A 32 378 378 HOH HOH . Q 6 HOH A 33 379 379 HOH HOH . Q 6 HOH A 34 380 380 HOH HOH . Q 6 HOH A 35 381 381 HOH HOH . Q 6 HOH A 36 382 382 HOH HOH . Q 6 HOH A 37 383 383 HOH HOH . Q 6 HOH A 38 384 384 HOH HOH . Q 6 HOH A 39 385 385 HOH HOH . Q 6 HOH A 40 386 386 HOH HOH . Q 6 HOH A 41 387 387 HOH HOH . Q 6 HOH A 42 388 388 HOH HOH . Q 6 HOH A 43 389 389 HOH HOH . Q 6 HOH A 44 390 390 HOH HOH . Q 6 HOH A 45 391 391 HOH HOH . Q 6 HOH A 46 392 392 HOH HOH . Q 6 HOH A 47 393 393 HOH HOH . Q 6 HOH A 48 394 394 HOH HOH . Q 6 HOH A 49 395 395 HOH HOH . Q 6 HOH A 50 396 396 HOH HOH . Q 6 HOH A 51 397 397 HOH HOH . Q 6 HOH A 52 398 398 HOH HOH . Q 6 HOH A 53 399 399 HOH HOH . Q 6 HOH A 54 400 400 HOH HOH . Q 6 HOH A 55 401 401 HOH HOH . Q 6 HOH A 56 402 402 HOH HOH . Q 6 HOH A 57 403 403 HOH HOH . Q 6 HOH A 58 404 404 HOH HOH . Q 6 HOH A 59 405 405 HOH HOH . Q 6 HOH A 60 406 406 HOH HOH . Q 6 HOH A 61 407 407 HOH HOH . Q 6 HOH A 62 408 408 HOH HOH . Q 6 HOH A 63 409 409 HOH HOH . Q 6 HOH A 64 410 410 HOH HOH . Q 6 HOH A 65 411 411 HOH HOH . Q 6 HOH A 66 412 412 HOH HOH . Q 6 HOH A 67 413 413 HOH HOH . Q 6 HOH A 68 414 414 HOH HOH . Q 6 HOH A 69 415 415 HOH HOH . Q 6 HOH A 70 416 416 HOH HOH . Q 6 HOH A 71 417 417 HOH HOH . Q 6 HOH A 72 418 418 HOH HOH . Q 6 HOH A 73 419 419 HOH HOH . Q 6 HOH A 74 420 420 HOH HOH . Q 6 HOH A 75 421 421 HOH HOH . Q 6 HOH A 76 422 422 HOH HOH . Q 6 HOH A 77 423 423 HOH HOH . Q 6 HOH A 78 424 424 HOH HOH . Q 6 HOH A 79 425 425 HOH HOH . Q 6 HOH A 80 426 426 HOH HOH . Q 6 HOH A 81 427 427 HOH HOH . Q 6 HOH A 82 428 428 HOH HOH . Q 6 HOH A 83 429 429 HOH HOH . R 6 HOH B 1 345 345 HOH HOH . R 6 HOH B 2 346 346 HOH HOH . R 6 HOH B 3 347 347 HOH HOH . R 6 HOH B 4 348 348 HOH HOH . R 6 HOH B 5 349 349 HOH HOH . R 6 HOH B 6 350 350 HOH HOH . R 6 HOH B 7 351 351 HOH HOH . R 6 HOH B 8 352 352 HOH HOH . R 6 HOH B 9 353 353 HOH HOH . R 6 HOH B 10 354 354 HOH HOH . R 6 HOH B 11 355 355 HOH HOH . R 6 HOH B 12 356 356 HOH HOH . R 6 HOH B 13 357 357 HOH HOH . R 6 HOH B 14 358 358 HOH HOH . R 6 HOH B 15 359 359 HOH HOH . R 6 HOH B 16 360 360 HOH HOH . R 6 HOH B 17 361 361 HOH HOH . R 6 HOH B 18 362 362 HOH HOH . R 6 HOH B 19 363 363 HOH HOH . R 6 HOH B 20 364 364 HOH HOH . R 6 HOH B 21 365 365 HOH HOH . R 6 HOH B 22 366 366 HOH HOH . R 6 HOH B 23 367 367 HOH HOH . R 6 HOH B 24 368 368 HOH HOH . R 6 HOH B 25 369 369 HOH HOH . R 6 HOH B 26 370 370 HOH HOH . R 6 HOH B 27 371 371 HOH HOH . R 6 HOH B 28 372 372 HOH HOH . R 6 HOH B 29 373 373 HOH HOH . R 6 HOH B 30 374 374 HOH HOH . R 6 HOH B 31 375 375 HOH HOH . R 6 HOH B 32 376 376 HOH HOH . R 6 HOH B 33 377 377 HOH HOH . R 6 HOH B 34 378 378 HOH HOH . R 6 HOH B 35 379 379 HOH HOH . R 6 HOH B 36 380 380 HOH HOH . R 6 HOH B 37 381 381 HOH HOH . R 6 HOH B 38 382 382 HOH HOH . R 6 HOH B 39 383 383 HOH HOH . R 6 HOH B 40 384 384 HOH HOH . R 6 HOH B 41 385 385 HOH HOH . R 6 HOH B 42 386 386 HOH HOH . R 6 HOH B 43 387 387 HOH HOH . R 6 HOH B 44 388 388 HOH HOH . R 6 HOH B 45 389 389 HOH HOH . R 6 HOH B 46 390 390 HOH HOH . R 6 HOH B 47 391 391 HOH HOH . R 6 HOH B 48 392 392 HOH HOH . R 6 HOH B 49 393 393 HOH HOH . R 6 HOH B 50 394 394 HOH HOH . R 6 HOH B 51 395 395 HOH HOH . R 6 HOH B 52 396 396 HOH HOH . R 6 HOH B 53 397 397 HOH HOH . R 6 HOH B 54 398 398 HOH HOH . R 6 HOH B 55 399 399 HOH HOH . R 6 HOH B 56 400 400 HOH HOH . R 6 HOH B 57 401 401 HOH HOH . R 6 HOH B 58 402 402 HOH HOH . R 6 HOH B 59 403 403 HOH HOH . R 6 HOH B 60 404 404 HOH HOH . R 6 HOH B 61 405 405 HOH HOH . R 6 HOH B 62 406 406 HOH HOH . R 6 HOH B 63 407 407 HOH HOH . R 6 HOH B 64 408 408 HOH HOH . R 6 HOH B 65 409 409 HOH HOH . R 6 HOH B 66 410 410 HOH HOH . R 6 HOH B 67 412 412 HOH HOH . R 6 HOH B 68 413 413 HOH HOH . R 6 HOH B 69 414 414 HOH HOH . R 6 HOH B 70 415 415 HOH HOH . R 6 HOH B 71 416 416 HOH HOH . S 6 HOH C 1 346 346 HOH HOH . S 6 HOH C 2 347 347 HOH HOH . S 6 HOH C 3 348 348 HOH HOH . S 6 HOH C 4 349 349 HOH HOH . S 6 HOH C 5 350 350 HOH HOH . S 6 HOH C 6 351 351 HOH HOH . S 6 HOH C 7 352 352 HOH HOH . S 6 HOH C 8 353 353 HOH HOH . S 6 HOH C 9 354 354 HOH HOH . S 6 HOH C 10 355 355 HOH HOH . S 6 HOH C 11 356 356 HOH HOH . S 6 HOH C 12 357 357 HOH HOH . S 6 HOH C 13 358 358 HOH HOH . S 6 HOH C 14 359 359 HOH HOH . S 6 HOH C 15 360 360 HOH HOH . S 6 HOH C 16 361 361 HOH HOH . S 6 HOH C 17 362 362 HOH HOH . S 6 HOH C 18 363 363 HOH HOH . S 6 HOH C 19 364 364 HOH HOH . S 6 HOH C 20 365 365 HOH HOH . S 6 HOH C 21 366 366 HOH HOH . S 6 HOH C 22 367 367 HOH HOH . S 6 HOH C 23 368 368 HOH HOH . S 6 HOH C 24 369 369 HOH HOH . S 6 HOH C 25 370 370 HOH HOH . S 6 HOH C 26 371 371 HOH HOH . S 6 HOH C 27 372 372 HOH HOH . S 6 HOH C 28 373 373 HOH HOH . S 6 HOH C 29 374 374 HOH HOH . S 6 HOH C 30 375 375 HOH HOH . S 6 HOH C 31 376 376 HOH HOH . S 6 HOH C 32 377 377 HOH HOH . S 6 HOH C 33 378 378 HOH HOH . S 6 HOH C 34 379 379 HOH HOH . S 6 HOH C 35 380 380 HOH HOH . S 6 HOH C 36 381 381 HOH HOH . S 6 HOH C 37 382 382 HOH HOH . S 6 HOH C 38 383 383 HOH HOH . S 6 HOH C 39 384 384 HOH HOH . S 6 HOH C 40 385 385 HOH HOH . S 6 HOH C 41 386 386 HOH HOH . S 6 HOH C 42 387 387 HOH HOH . S 6 HOH C 43 388 388 HOH HOH . S 6 HOH C 44 389 389 HOH HOH . S 6 HOH C 45 390 390 HOH HOH . S 6 HOH C 46 391 391 HOH HOH . S 6 HOH C 47 392 392 HOH HOH . S 6 HOH C 48 393 393 HOH HOH . S 6 HOH C 49 394 394 HOH HOH . S 6 HOH C 50 395 395 HOH HOH . S 6 HOH C 51 396 396 HOH HOH . S 6 HOH C 52 397 397 HOH HOH . S 6 HOH C 53 398 398 HOH HOH . S 6 HOH C 54 399 399 HOH HOH . S 6 HOH C 55 400 400 HOH HOH . S 6 HOH C 56 401 401 HOH HOH . S 6 HOH C 57 402 402 HOH HOH . S 6 HOH C 58 403 403 HOH HOH . S 6 HOH C 59 404 404 HOH HOH . S 6 HOH C 60 405 405 HOH HOH . S 6 HOH C 61 406 406 HOH HOH . S 6 HOH C 62 407 407 HOH HOH . S 6 HOH C 63 408 408 HOH HOH . S 6 HOH C 64 409 409 HOH HOH . S 6 HOH C 65 410 410 HOH HOH . S 6 HOH C 66 411 411 HOH HOH . S 6 HOH C 67 412 412 HOH HOH . S 6 HOH C 68 413 413 HOH HOH . S 6 HOH C 69 414 414 HOH HOH . S 6 HOH C 70 415 415 HOH HOH . S 6 HOH C 71 416 416 HOH HOH . S 6 HOH C 72 417 417 HOH HOH . S 6 HOH C 73 418 418 HOH HOH . S 6 HOH C 74 419 419 HOH HOH . S 6 HOH C 75 420 420 HOH HOH . S 6 HOH C 76 421 421 HOH HOH . S 6 HOH C 77 422 422 HOH HOH . T 6 HOH D 1 346 346 HOH HOH . T 6 HOH D 2 347 347 HOH HOH . T 6 HOH D 3 348 348 HOH HOH . T 6 HOH D 4 349 349 HOH HOH . T 6 HOH D 5 350 350 HOH HOH . T 6 HOH D 6 351 351 HOH HOH . T 6 HOH D 7 352 352 HOH HOH . T 6 HOH D 8 353 353 HOH HOH . T 6 HOH D 9 354 354 HOH HOH . T 6 HOH D 10 355 355 HOH HOH . T 6 HOH D 11 356 356 HOH HOH . T 6 HOH D 12 357 357 HOH HOH . T 6 HOH D 13 358 358 HOH HOH . T 6 HOH D 14 359 359 HOH HOH . T 6 HOH D 15 360 360 HOH HOH . T 6 HOH D 16 361 361 HOH HOH . T 6 HOH D 17 362 362 HOH HOH . T 6 HOH D 18 363 363 HOH HOH . T 6 HOH D 19 364 364 HOH HOH . T 6 HOH D 20 365 365 HOH HOH . T 6 HOH D 21 366 366 HOH HOH . T 6 HOH D 22 367 367 HOH HOH . T 6 HOH D 23 368 368 HOH HOH . T 6 HOH D 24 369 369 HOH HOH . T 6 HOH D 25 370 370 HOH HOH . T 6 HOH D 26 371 371 HOH HOH . T 6 HOH D 27 372 372 HOH HOH . T 6 HOH D 28 373 373 HOH HOH . T 6 HOH D 29 374 374 HOH HOH . T 6 HOH D 30 375 375 HOH HOH . T 6 HOH D 31 376 376 HOH HOH . T 6 HOH D 32 377 377 HOH HOH . T 6 HOH D 33 378 378 HOH HOH . T 6 HOH D 34 379 379 HOH HOH . T 6 HOH D 35 380 380 HOH HOH . T 6 HOH D 36 381 381 HOH HOH . T 6 HOH D 37 382 382 HOH HOH . T 6 HOH D 38 383 383 HOH HOH . T 6 HOH D 39 384 384 HOH HOH . T 6 HOH D 40 385 385 HOH HOH . T 6 HOH D 41 386 386 HOH HOH . T 6 HOH D 42 387 387 HOH HOH . T 6 HOH D 43 388 388 HOH HOH . T 6 HOH D 44 389 389 HOH HOH . T 6 HOH D 45 390 390 HOH HOH . T 6 HOH D 46 391 391 HOH HOH . T 6 HOH D 47 392 392 HOH HOH . T 6 HOH D 48 393 393 HOH HOH . T 6 HOH D 49 394 394 HOH HOH . T 6 HOH D 50 395 395 HOH HOH . T 6 HOH D 51 396 396 HOH HOH . T 6 HOH D 52 397 397 HOH HOH . T 6 HOH D 53 398 398 HOH HOH . T 6 HOH D 54 399 399 HOH HOH . T 6 HOH D 55 400 400 HOH HOH . T 6 HOH D 56 401 401 HOH HOH . T 6 HOH D 57 402 402 HOH HOH . T 6 HOH D 58 403 403 HOH HOH . T 6 HOH D 59 404 404 HOH HOH . T 6 HOH D 60 405 405 HOH HOH . T 6 HOH D 61 406 406 HOH HOH . T 6 HOH D 62 407 407 HOH HOH . T 6 HOH D 63 408 408 HOH HOH . T 6 HOH D 64 409 409 HOH HOH . T 6 HOH D 65 410 410 HOH HOH . T 6 HOH D 66 411 411 HOH HOH . T 6 HOH D 67 412 412 HOH HOH . T 6 HOH D 68 413 413 HOH HOH . T 6 HOH D 69 414 414 HOH HOH . T 6 HOH D 70 415 415 HOH HOH . T 6 HOH D 71 416 416 HOH HOH . T 6 HOH D 72 417 417 HOH HOH . T 6 HOH D 73 418 418 HOH HOH . T 6 HOH D 74 419 419 HOH HOH . T 6 HOH D 75 420 420 HOH HOH . T 6 HOH D 76 421 421 HOH HOH . T 6 HOH D 77 422 422 HOH HOH . T 6 HOH D 78 423 423 HOH HOH . T 6 HOH D 79 424 424 HOH HOH . T 6 HOH D 80 425 425 HOH HOH . T 6 HOH D 81 426 426 HOH HOH . T 6 HOH D 82 427 427 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . N 5 -22.913 6.462 18.3 1 51.73 ? N GLY 345 D 1 HETATM 2 C CA GLY . . . N 5 -22.182 5.407 17.521 1 50.96 ? CA GLY 345 D 1 HETATM 3 C C GLY . . . N 5 -20.843 4.924 18.081 1 50.53 ? C GLY 345 D 1 HETATM 4 O O GLY . . . N 5 -20.561 4.937 19.308 1 50.09 ? O GLY 345 D 1 HETATM 5 O OXT GLY . . . N 5 -19.992 4.471 17.285 1 49.12 ? OXT GLY 345 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #