data_3RUB # _model_server_result.job_id 0B90eIhrthRsFMrnQgHjCQ _model_server_result.datetime_utc '2024-11-20 07:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":493}' # _entry.id 3RUB # _exptl.entry_id 3RUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.118 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ASPARAGINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RUB _cell.length_a 148.7 _cell.length_b 148.7 _cell.length_c 137.5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 148.7 148.7 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 148.7 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 148.7 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 148.7 0 137.5 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 148.7 137.5 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 137.5 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 148.7 148.7 137.5 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 L CYS 172 1_555 A SG CYS 192 L CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf2 A SG CYS 247 L CYS 247 1_555 A SG CYS 247 L CYS 247 7_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? # _chem_comp.formula 'C4 H8 N2 O3' _chem_comp.formula_weight 132.118 _chem_comp.id ASN _chem_comp.mon_nstd_flag y _chem_comp.name ASPARAGINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ASN sing 39 n n N H ASN sing 40 n n N H2 ASN sing 41 n n CA C ASN sing 42 n n CA CB ASN sing 43 n n CA HA ASN sing 44 n n C O ASN doub 45 n n C OXT ASN sing 46 n n CB CG ASN sing 47 n n CB HB2 ASN sing 48 n n CB HB3 ASN sing 49 n n CG OD1 ASN doub 50 n n CG ND2 ASN sing 51 n n ND2 HD21 ASN sing 52 n n ND2 HD22 ASN sing 53 n n OXT HXT ASN sing 54 n n # _atom_sites.entry_id 3RUB _atom_sites.fract_transf_matrix[1][1] 0.006725 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 L 1 490 490 SO4 SO4 . D 3 SO4 L 1 491 491 SO4 SO4 . E 3 SO4 L 1 492 492 SO4 SO4 . F 4 ASN L 1 493 468 ASN ASN . G 5 HOH L 1 494 150 HOH HOH . G 5 HOH L 2 495 1 HOH HOH . G 5 HOH L 3 496 2 HOH HOH . G 5 HOH L 4 497 3 HOH HOH . G 5 HOH L 5 498 4 HOH HOH . G 5 HOH L 6 499 5 HOH HOH . G 5 HOH L 7 500 6 HOH HOH . G 5 HOH L 8 501 7 HOH HOH . G 5 HOH L 9 502 8 HOH HOH . G 5 HOH L 10 503 9 HOH HOH . G 5 HOH L 11 504 10 HOH HOH . G 5 HOH L 12 505 11 HOH HOH . G 5 HOH L 13 506 12 HOH HOH . G 5 HOH L 14 507 13 HOH HOH . G 5 HOH L 15 508 14 HOH HOH . G 5 HOH L 16 509 16 HOH HOH . G 5 HOH L 17 510 17 HOH HOH . G 5 HOH L 18 511 18 HOH HOH . G 5 HOH L 19 512 19 HOH HOH . G 5 HOH L 20 513 20 HOH HOH . G 5 HOH L 21 514 22 HOH HOH . G 5 HOH L 22 515 23 HOH HOH . G 5 HOH L 23 516 24 HOH HOH . G 5 HOH L 24 517 25 HOH HOH . G 5 HOH L 25 518 26 HOH HOH . G 5 HOH L 26 519 27 HOH HOH . G 5 HOH L 27 520 28 HOH HOH . G 5 HOH L 28 521 29 HOH HOH . G 5 HOH L 29 522 30 HOH HOH . G 5 HOH L 30 523 31 HOH HOH . G 5 HOH L 31 524 32 HOH HOH . G 5 HOH L 32 525 33 HOH HOH . G 5 HOH L 33 526 34 HOH HOH . G 5 HOH L 34 527 35 HOH HOH . G 5 HOH L 35 528 36 HOH HOH . G 5 HOH L 36 529 37 HOH HOH . G 5 HOH L 37 530 38 HOH HOH . G 5 HOH L 38 531 39 HOH HOH . G 5 HOH L 39 532 40 HOH HOH . G 5 HOH L 40 533 41 HOH HOH . G 5 HOH L 41 534 42 HOH HOH . G 5 HOH L 42 535 43 HOH HOH . G 5 HOH L 43 536 44 HOH HOH . G 5 HOH L 44 537 45 HOH HOH . G 5 HOH L 45 538 46 HOH HOH . G 5 HOH L 46 539 47 HOH HOH . G 5 HOH L 47 540 48 HOH HOH . G 5 HOH L 48 541 49 HOH HOH . G 5 HOH L 49 542 50 HOH HOH . G 5 HOH L 50 543 51 HOH HOH . G 5 HOH L 51 544 52 HOH HOH . G 5 HOH L 52 545 53 HOH HOH . G 5 HOH L 53 546 54 HOH HOH . G 5 HOH L 54 547 55 HOH HOH . G 5 HOH L 55 548 56 HOH HOH . G 5 HOH L 56 549 57 HOH HOH . G 5 HOH L 57 550 58 HOH HOH . G 5 HOH L 58 551 59 HOH HOH . G 5 HOH L 59 552 60 HOH HOH . G 5 HOH L 60 553 61 HOH HOH . G 5 HOH L 61 554 62 HOH HOH . G 5 HOH L 62 555 63 HOH HOH . G 5 HOH L 63 556 64 HOH HOH . G 5 HOH L 64 557 65 HOH HOH . G 5 HOH L 65 558 66 HOH HOH . G 5 HOH L 66 559 67 HOH HOH . G 5 HOH L 67 560 70 HOH HOH . G 5 HOH L 68 561 71 HOH HOH . G 5 HOH L 69 562 72 HOH HOH . G 5 HOH L 70 563 73 HOH HOH . G 5 HOH L 71 564 74 HOH HOH . G 5 HOH L 72 565 75 HOH HOH . G 5 HOH L 73 566 76 HOH HOH . G 5 HOH L 74 567 77 HOH HOH . G 5 HOH L 75 568 78 HOH HOH . G 5 HOH L 76 569 79 HOH HOH . G 5 HOH L 77 570 81 HOH HOH . G 5 HOH L 78 571 82 HOH HOH . G 5 HOH L 79 572 84 HOH HOH . G 5 HOH L 80 573 85 HOH HOH . G 5 HOH L 81 574 86 HOH HOH . G 5 HOH L 82 575 87 HOH HOH . G 5 HOH L 83 576 90 HOH HOH . G 5 HOH L 84 577 91 HOH HOH . G 5 HOH L 85 578 92 HOH HOH . G 5 HOH L 86 579 93 HOH HOH . G 5 HOH L 87 580 95 HOH HOH . G 5 HOH L 88 581 96 HOH HOH . G 5 HOH L 89 582 97 HOH HOH . G 5 HOH L 90 583 98 HOH HOH . G 5 HOH L 91 584 99 HOH HOH . G 5 HOH L 92 585 100 HOH HOH . G 5 HOH L 93 586 101 HOH HOH . G 5 HOH L 94 587 102 HOH HOH . G 5 HOH L 95 588 103 HOH HOH . G 5 HOH L 96 589 104 HOH HOH . G 5 HOH L 97 590 106 HOH HOH . G 5 HOH L 98 591 107 HOH HOH . G 5 HOH L 99 592 108 HOH HOH . G 5 HOH L 100 593 109 HOH HOH . G 5 HOH L 101 594 110 HOH HOH . G 5 HOH L 102 595 111 HOH HOH . G 5 HOH L 103 596 112 HOH HOH . G 5 HOH L 104 597 113 HOH HOH . G 5 HOH L 105 598 114 HOH HOH . G 5 HOH L 106 599 115 HOH HOH . G 5 HOH L 107 600 116 HOH HOH . G 5 HOH L 108 601 118 HOH HOH . G 5 HOH L 109 602 119 HOH HOH . G 5 HOH L 110 603 120 HOH HOH . G 5 HOH L 111 604 122 HOH HOH . G 5 HOH L 112 605 123 HOH HOH . G 5 HOH L 113 606 124 HOH HOH . G 5 HOH L 114 607 126 HOH HOH . G 5 HOH L 115 608 127 HOH HOH . G 5 HOH L 116 609 131 HOH HOH . G 5 HOH L 117 610 132 HOH HOH . G 5 HOH L 118 611 135 HOH HOH . G 5 HOH L 119 612 136 HOH HOH . G 5 HOH L 120 613 137 HOH HOH . G 5 HOH L 121 614 138 HOH HOH . G 5 HOH L 122 615 139 HOH HOH . G 5 HOH L 123 616 141 HOH HOH . G 5 HOH L 124 617 142 HOH HOH . G 5 HOH L 125 618 144 HOH HOH . G 5 HOH L 126 619 145 HOH HOH . G 5 HOH L 127 620 147 HOH HOH . G 5 HOH L 128 621 148 HOH HOH . G 5 HOH L 129 622 149 HOH HOH . G 5 HOH L 130 623 151 HOH HOH . G 5 HOH L 131 624 152 HOH HOH . G 5 HOH L 132 625 153 HOH HOH . G 5 HOH L 133 626 154 HOH HOH . G 5 HOH L 134 627 155 HOH HOH . G 5 HOH L 135 628 156 HOH HOH . G 5 HOH L 136 629 157 HOH HOH . G 5 HOH L 137 630 158 HOH HOH . G 5 HOH L 138 631 161 HOH HOH . G 5 HOH L 139 632 162 HOH HOH . G 5 HOH L 140 633 166 HOH HOH . G 5 HOH L 141 634 167 HOH HOH . G 5 HOH L 142 635 168 HOH HOH . G 5 HOH L 143 636 169 HOH HOH . G 5 HOH L 144 637 170 HOH HOH . G 5 HOH L 145 638 171 HOH HOH . G 5 HOH L 146 639 172 HOH HOH . G 5 HOH L 147 640 173 HOH HOH . G 5 HOH L 148 641 175 HOH HOH . G 5 HOH L 149 642 176 HOH HOH . G 5 HOH L 150 643 177 HOH HOH . G 5 HOH L 151 644 181 HOH HOH . G 5 HOH L 152 645 183 HOH HOH . G 5 HOH L 153 646 184 HOH HOH . G 5 HOH L 154 647 185 HOH HOH . G 5 HOH L 155 648 188 HOH HOH . G 5 HOH L 156 649 189 HOH HOH . G 5 HOH L 157 650 190 HOH HOH . G 5 HOH L 158 651 191 HOH HOH . G 5 HOH L 159 652 192 HOH HOH . G 5 HOH L 160 653 193 HOH HOH . G 5 HOH L 161 654 194 HOH HOH . G 5 HOH L 162 655 195 HOH HOH . G 5 HOH L 163 656 196 HOH HOH . G 5 HOH L 164 657 197 HOH HOH . G 5 HOH L 165 658 198 HOH HOH . G 5 HOH L 166 659 200 HOH HOH . G 5 HOH L 167 660 202 HOH HOH . G 5 HOH L 168 661 203 HOH HOH . G 5 HOH L 169 662 204 HOH HOH . G 5 HOH L 170 663 207 HOH HOH . G 5 HOH L 171 664 209 HOH HOH . G 5 HOH L 172 665 210 HOH HOH . G 5 HOH L 173 666 211 HOH HOH . G 5 HOH L 174 667 212 HOH HOH . G 5 HOH L 175 668 213 HOH HOH . G 5 HOH L 176 669 214 HOH HOH . G 5 HOH L 177 670 215 HOH HOH . G 5 HOH L 178 671 216 HOH HOH . G 5 HOH L 179 672 140 HOH HOH . H 5 HOH S 1 124 15 HOH HOH . H 5 HOH S 2 125 21 HOH HOH . H 5 HOH S 3 126 68 HOH HOH . H 5 HOH S 4 127 69 HOH HOH . H 5 HOH S 5 128 80 HOH HOH . H 5 HOH S 6 129 83 HOH HOH . H 5 HOH S 7 130 88 HOH HOH . H 5 HOH S 8 131 89 HOH HOH . H 5 HOH S 9 132 94 HOH HOH . H 5 HOH S 10 133 105 HOH HOH . H 5 HOH S 11 134 117 HOH HOH . H 5 HOH S 12 135 121 HOH HOH . H 5 HOH S 13 136 125 HOH HOH . H 5 HOH S 14 137 128 HOH HOH . H 5 HOH S 15 138 129 HOH HOH . H 5 HOH S 16 139 130 HOH HOH . H 5 HOH S 17 140 133 HOH HOH . H 5 HOH S 18 141 134 HOH HOH . H 5 HOH S 19 143 143 HOH HOH . H 5 HOH S 20 144 146 HOH HOH . H 5 HOH S 21 145 159 HOH HOH . H 5 HOH S 22 146 160 HOH HOH . H 5 HOH S 23 147 163 HOH HOH . H 5 HOH S 24 148 164 HOH HOH . H 5 HOH S 25 149 165 HOH HOH . H 5 HOH S 26 150 174 HOH HOH . H 5 HOH S 27 151 178 HOH HOH . H 5 HOH S 28 152 179 HOH HOH . H 5 HOH S 29 153 180 HOH HOH . H 5 HOH S 30 154 182 HOH HOH . H 5 HOH S 31 155 186 HOH HOH . H 5 HOH S 32 156 187 HOH HOH . H 5 HOH S 33 157 199 HOH HOH . H 5 HOH S 34 158 201 HOH HOH . H 5 HOH S 35 159 205 HOH HOH . H 5 HOH S 36 160 206 HOH HOH . H 5 HOH S 37 161 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id ASN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 114.264 _atom_site.Cartn_y 112.396 _atom_site.Cartn_z 111.714 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id ASN _atom_site.auth_seq_id 493 _atom_site.auth_asym_id L _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #