data_3RUH
#
_model_server_result.job_id            vBpKxraqrV4hfxFfbyMz5g 
_model_server_result.datetime_utc      '2025-02-20 15:30:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ruh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":343}' 
#
_entry.id    3RUH 
#
_exptl.entry_id    3RUH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RUH 
_cell.length_a            76.612 
_cell.length_b            76.612 
_cell.length_c            220.6 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RUH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,Q 1 1 
D,O,P,T 1 2 
B,C,K,L,M,N,R,S 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -y,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 -73.533333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     3RUH 
_atom_sites.fract_transf_matrix[1][1]    0.013053 
_atom_sites.fract_transf_matrix[1][2]    0.007536 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015072 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 343 343 NAD NAD . 
F 3 UD6 A 1 344 344 UD6 UD6 . 
G 4 SO4 A 1 345 1 SO4 SO4 . 
H 4 SO4 A 1 346 2 SO4 SO4 . 
I 4 SO4 A 1 347 3 SO4 SO4 . 
J 5 NA A 1 348 1 NA NA . 
K 2 NAD B 1 343 343 NAD NAD . 
L 3 UD6 B 1 344 344 UD6 UD6 . 
M 2 NAD C 1 343 343 NAD NAD . 
N 3 UD6 C 1 344 344 UD6 UD6 . 
O 2 NAD D 1 343 343 NAD NAD . 
P 3 UD6 D 1 344 344 UD6 UD6 . 
Q 6 HOH A 1 349 15 HOH HOH . 
Q 6 HOH A 2 350 19 HOH HOH . 
Q 6 HOH A 3 351 23 HOH HOH . 
Q 6 HOH A 4 352 31 HOH HOH . 
Q 6 HOH A 5 353 32 HOH HOH . 
Q 6 HOH A 6 354 38 HOH HOH . 
Q 6 HOH A 7 355 41 HOH HOH . 
R 6 HOH B 1 345 4 HOH HOH . 
R 6 HOH B 2 346 6 HOH HOH . 
R 6 HOH B 3 347 9 HOH HOH . 
R 6 HOH B 4 348 17 HOH HOH . 
R 6 HOH B 5 349 21 HOH HOH . 
R 6 HOH B 6 350 24 HOH HOH . 
R 6 HOH B 7 351 27 HOH HOH . 
R 6 HOH B 8 352 29 HOH HOH . 
R 6 HOH B 9 353 34 HOH HOH . 
R 6 HOH B 10 354 37 HOH HOH . 
S 6 HOH C 1 345 1 HOH HOH . 
S 6 HOH C 2 346 2 HOH HOH . 
S 6 HOH C 3 347 5 HOH HOH . 
S 6 HOH C 4 348 10 HOH HOH . 
S 6 HOH C 5 349 11 HOH HOH . 
S 6 HOH C 6 350 12 HOH HOH . 
S 6 HOH C 7 351 14 HOH HOH . 
S 6 HOH C 8 352 16 HOH HOH . 
S 6 HOH C 9 353 20 HOH HOH . 
S 6 HOH C 10 354 22 HOH HOH . 
S 6 HOH C 11 355 25 HOH HOH . 
S 6 HOH C 12 356 36 HOH HOH . 
S 6 HOH C 13 357 39 HOH HOH . 
T 6 HOH D 1 345 3 HOH HOH . 
T 6 HOH D 2 346 7 HOH HOH . 
T 6 HOH D 3 347 8 HOH HOH . 
T 6 HOH D 4 348 13 HOH HOH . 
T 6 HOH D 5 349 18 HOH HOH . 
T 6 HOH D 6 350 26 HOH HOH . 
T 6 HOH D 7 351 28 HOH HOH . 
T 6 HOH D 8 352 30 HOH HOH . 
T 6 HOH D 9 353 33 HOH HOH . 
T 6 HOH D 10 354 35 HOH HOH . 
T 6 HOH D 11 355 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . M 2 22.296 -37.64 51.346 1 21.55 ? PA NAD 343 C 1 
HETATM 2 O O1A NAD . . . M 2 22.599 -37.083 52.681 1 23.11 ? O1A NAD 343 C 1 
HETATM 3 O O2A NAD . . . M 2 20.955 -37.445 50.782 1 23.16 ? O2A NAD 343 C 1 
HETATM 4 O O5B NAD . . . M 2 23.386 -37.082 50.328 1 21.49 ? O5B NAD 343 C 1 
HETATM 5 C C5B NAD . . . M 2 23.017 -36.768 49.009 1 22 ? C5B NAD 343 C 1 
HETATM 6 C C4B NAD . . . M 2 23.35 -35.311 48.73 1 23.25 ? C4B NAD 343 C 1 
HETATM 7 O O4B NAD . . . M 2 23.281 -35.137 47.301 1 23.37 ? O4B NAD 343 C 1 
HETATM 8 C C3B NAD . . . M 2 22.307 -34.37 49.339 1 24.61 ? C3B NAD 343 C 1 
HETATM 9 O O3B NAD . . . M 2 22.963 -33.259 49.968 1 23.71 ? O3B NAD 343 C 1 
HETATM 10 C C2B NAD . . . M 2 21.549 -33.876 48.129 1 25.61 ? C2B NAD 343 C 1 
HETATM 11 O O2B NAD . . . M 2 21.121 -32.528 48.345 1 28.5 ? O2B NAD 343 C 1 
HETATM 12 C C1B NAD . . . M 2 22.649 -33.891 47.088 1 24.64 ? C1B NAD 343 C 1 
HETATM 13 N N9A NAD . . . M 2 22.095 -33.971 45.741 1 26.13 ? N9A NAD 343 C 1 
HETATM 14 C C8A NAD . . . M 2 21.138 -34.801 45.322 1 26.57 ? C8A NAD 343 C 1 
HETATM 15 N N7A NAD . . . M 2 20.904 -34.573 44.033 1 27.6 ? N7A NAD 343 C 1 
HETATM 16 C C5A NAD . . . M 2 21.727 -33.615 43.627 1 27.79 ? C5A NAD 343 C 1 
HETATM 17 C C6A NAD . . . M 2 21.94 -32.975 42.412 1 28.76 ? C6A NAD 343 C 1 
HETATM 18 N N6A NAD . . . M 2 21.23 -33.304 41.344 1 29.35 ? N6A NAD 343 C 1 
HETATM 19 N N1A NAD . . . M 2 22.873 -32.011 42.333 1 29.32 ? N1A NAD 343 C 1 
HETATM 20 C C2A NAD . . . M 2 23.588 -31.665 43.4 1 29.48 ? C2A NAD 343 C 1 
HETATM 21 N N3A NAD . . . M 2 23.409 -32.255 44.578 1 28.54 ? N3A NAD 343 C 1 
HETATM 22 C C4A NAD . . . M 2 22.489 -33.231 44.715 1 27.41 ? C4A NAD 343 C 1 
HETATM 23 O O3 NAD . . . M 2 22.609 -39.193 51.324 1 21.99 ? O3 NAD 343 C 1 
HETATM 24 P PN NAD . . . M 2 24.054 -39.808 51.701 1 22.64 ? PN NAD 343 C 1 
HETATM 25 O O1N NAD . . . M 2 25.077 -38.773 51.972 1 22.97 ? O1N NAD 343 C 1 
HETATM 26 O O2N NAD . . . M 2 23.773 -40.82 52.733 1 25.28 ? O2N NAD 343 C 1 
HETATM 27 O O5D NAD . . . M 2 24.415 -40.579 50.387 1 22.94 ? O5D NAD 343 C 1 
HETATM 28 C C5D NAD . . . M 2 25.022 -39.906 49.321 1 25.82 ? C5D NAD 343 C 1 
HETATM 29 C C4D NAD . . . M 2 25.591 -40.934 48.352 1 28.87 ? C4D NAD 343 C 1 
HETATM 30 O O4D NAD . . . M 2 25.864 -42.193 49.046 1 31.52 ? O4D NAD 343 C 1 
HETATM 31 C C3D NAD . . . M 2 24.565 -41.281 47.276 1 29.63 ? C3D NAD 343 C 1 
HETATM 32 O O3D NAD . . . M 2 25.298 -41.669 46.114 1 29.38 ? O3D NAD 343 C 1 
HETATM 33 C C2D NAD . . . M 2 23.87 -42.483 47.882 1 30.72 ? C2D NAD 343 C 1 
HETATM 34 O O2D NAD . . . M 2 23.226 -43.271 46.892 1 30.52 ? O2D NAD 343 C 1 
HETATM 35 C C1D NAD . . . M 2 25.102 -43.211 48.362 1 31.67 ? C1D NAD 343 C 1 
HETATM 36 N N1N NAD . . . M 2 24.755 -44.291 49.289 1 34.27 ? N1N NAD 343 C 1 
HETATM 37 C C2N NAD . . . M 2 24.398 -44.039 50.649 1 34.82 ? C2N NAD 343 C 1 
HETATM 38 C C3N NAD . . . M 2 24.088 -45.14 51.458 1 36.54 ? C3N NAD 343 C 1 
HETATM 39 C C7N NAD . . . M 2 23.692 -44.993 52.931 1 37.51 ? C7N NAD 343 C 1 
HETATM 40 O O7N NAD . . . M 2 23.063 -45.88 53.512 1 38.35 ? O7N NAD 343 C 1 
HETATM 41 N N7N NAD . . . M 2 24.08 -43.865 53.514 1 38.11 ? N7N NAD 343 C 1 
HETATM 42 C C4N NAD . . . M 2 24.149 -46.431 50.919 1 37.06 ? C4N NAD 343 C 1 
HETATM 43 C C5N NAD . . . M 2 24.5 -46.677 49.586 1 35.7 ? C5N NAD 343 C 1 
HETATM 44 C C6N NAD . . . M 2 24.803 -45.604 48.76 1 34.82 ? C6N NAD 343 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#