data_3RUH # _model_server_result.job_id tS88WMrNFaegPuviHSFUGQ _model_server_result.datetime_utc '2025-02-20 15:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ruh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":343}' # _entry.id 3RUH # _exptl.entry_id 3RUH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RUH _cell.length_a 76.612 _cell.length_b 76.612 _cell.length_c 220.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RUH _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,Q 1 1 D,O,P,T 1 2 B,C,K,L,M,N,R,S 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_554 -y,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 -73.533333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 K N N ? 2 M N N ? 2 O N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3RUH _atom_sites.fract_transf_matrix[1][1] 0.013053 _atom_sites.fract_transf_matrix[1][2] 0.007536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 343 343 NAD NAD . F 3 UD6 A 1 344 344 UD6 UD6 . G 4 SO4 A 1 345 1 SO4 SO4 . H 4 SO4 A 1 346 2 SO4 SO4 . I 4 SO4 A 1 347 3 SO4 SO4 . J 5 NA A 1 348 1 NA NA . K 2 NAD B 1 343 343 NAD NAD . L 3 UD6 B 1 344 344 UD6 UD6 . M 2 NAD C 1 343 343 NAD NAD . N 3 UD6 C 1 344 344 UD6 UD6 . O 2 NAD D 1 343 343 NAD NAD . P 3 UD6 D 1 344 344 UD6 UD6 . Q 6 HOH A 1 349 15 HOH HOH . Q 6 HOH A 2 350 19 HOH HOH . Q 6 HOH A 3 351 23 HOH HOH . Q 6 HOH A 4 352 31 HOH HOH . Q 6 HOH A 5 353 32 HOH HOH . Q 6 HOH A 6 354 38 HOH HOH . Q 6 HOH A 7 355 41 HOH HOH . R 6 HOH B 1 345 4 HOH HOH . R 6 HOH B 2 346 6 HOH HOH . R 6 HOH B 3 347 9 HOH HOH . R 6 HOH B 4 348 17 HOH HOH . R 6 HOH B 5 349 21 HOH HOH . R 6 HOH B 6 350 24 HOH HOH . R 6 HOH B 7 351 27 HOH HOH . R 6 HOH B 8 352 29 HOH HOH . R 6 HOH B 9 353 34 HOH HOH . R 6 HOH B 10 354 37 HOH HOH . S 6 HOH C 1 345 1 HOH HOH . S 6 HOH C 2 346 2 HOH HOH . S 6 HOH C 3 347 5 HOH HOH . S 6 HOH C 4 348 10 HOH HOH . S 6 HOH C 5 349 11 HOH HOH . S 6 HOH C 6 350 12 HOH HOH . S 6 HOH C 7 351 14 HOH HOH . S 6 HOH C 8 352 16 HOH HOH . S 6 HOH C 9 353 20 HOH HOH . S 6 HOH C 10 354 22 HOH HOH . S 6 HOH C 11 355 25 HOH HOH . S 6 HOH C 12 356 36 HOH HOH . S 6 HOH C 13 357 39 HOH HOH . T 6 HOH D 1 345 3 HOH HOH . T 6 HOH D 2 346 7 HOH HOH . T 6 HOH D 3 347 8 HOH HOH . T 6 HOH D 4 348 13 HOH HOH . T 6 HOH D 5 349 18 HOH HOH . T 6 HOH D 6 350 26 HOH HOH . T 6 HOH D 7 351 28 HOH HOH . T 6 HOH D 8 352 30 HOH HOH . T 6 HOH D 9 353 33 HOH HOH . T 6 HOH D 10 354 35 HOH HOH . T 6 HOH D 11 355 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . O 2 -15.944 -28.646 49.928 1 22.67 ? PA NAD 343 D 1 HETATM 2 O O1A NAD . . . O 2 -15.536 -29.129 48.601 1 24.54 ? O1A NAD 343 D 1 HETATM 3 O O2A NAD . . . O 2 -17.338 -28.867 50.37 1 24.31 ? O2A NAD 343 D 1 HETATM 4 O O5B NAD . . . O 2 -14.92 -29.269 50.972 1 22.38 ? O5B NAD 343 D 1 HETATM 5 C C5B NAD . . . O 2 -15.284 -29.492 52.31 1 22.26 ? C5B NAD 343 D 1 HETATM 6 C C4B NAD . . . O 2 -14.872 -30.896 52.695 1 23.57 ? C4B NAD 343 D 1 HETATM 7 O O4B NAD . . . O 2 -15.076 -30.994 54.107 1 24.02 ? O4B NAD 343 D 1 HETATM 8 C C3B NAD . . . O 2 -15.799 -31.928 52.054 1 25.4 ? C3B NAD 343 D 1 HETATM 9 O O3B NAD . . . O 2 -15.015 -32.9 51.349 1 25.53 ? O3B NAD 343 D 1 HETATM 10 C C2B NAD . . . O 2 -16.487 -32.579 53.244 1 26.16 ? C2B NAD 343 D 1 HETATM 11 O O2B NAD . . . O 2 -16.608 -33.985 53.04 1 27.62 ? O2B NAD 343 D 1 HETATM 12 C C1B NAD . . . O 2 -15.482 -32.319 54.346 1 25.14 ? C1B NAD 343 D 1 HETATM 13 N N9A NAD . . . O 2 -16.165 -32.289 55.63 1 26.49 ? N9A NAD 343 D 1 HETATM 14 C C8A NAD . . . O 2 -17.224 -31.548 55.949 1 27.01 ? C8A NAD 343 D 1 HETATM 15 N N7A NAD . . . O 2 -17.566 -31.798 57.209 1 28.19 ? N7A NAD 343 D 1 HETATM 16 C C5A NAD . . . O 2 -16.709 -32.687 57.69 1 28.7 ? C5A NAD 343 D 1 HETATM 17 C C6A NAD . . . O 2 -16.561 -33.312 58.92 1 30.26 ? C6A NAD 343 D 1 HETATM 18 N N6A NAD . . . O 2 -17.404 -33.048 59.914 1 31 ? N6A NAD 343 D 1 HETATM 19 N N1A NAD . . . O 2 -15.559 -34.197 59.086 1 30.8 ? N1A NAD 343 D 1 HETATM 20 C C2A NAD . . . O 2 -14.719 -34.472 58.094 1 30.33 ? C2A NAD 343 D 1 HETATM 21 N N3A NAD . . . O 2 -14.839 -33.891 56.909 1 28.82 ? N3A NAD 343 D 1 HETATM 22 C C4A NAD . . . O 2 -15.818 -33 56.685 1 27.67 ? C4A NAD 343 D 1 HETATM 23 O O3 NAD . . . O 2 -15.599 -27.104 50.066 1 24.15 ? O3 NAD 343 D 1 HETATM 24 P PN NAD . . . O 2 -14.157 -26.482 49.666 1 26.28 ? PN NAD 343 D 1 HETATM 25 O O1N NAD . . . O 2 -13.151 -27.534 49.381 1 26.2 ? O1N NAD 343 D 1 HETATM 26 O O2N NAD . . . O 2 -14.424 -25.431 48.66 1 28.58 ? O2N NAD 343 D 1 HETATM 27 O O5D NAD . . . O 2 -13.767 -25.717 50.973 1 26.04 ? O5D NAD 343 D 1 HETATM 28 C C5D NAD . . . O 2 -13.181 -26.402 52.048 1 28.06 ? C5D NAD 343 D 1 HETATM 29 C C4D NAD . . . O 2 -12.628 -25.382 53.035 1 29.78 ? C4D NAD 343 D 1 HETATM 30 O O4D NAD . . . O 2 -12.382 -24.134 52.327 1 31.54 ? O4D NAD 343 D 1 HETATM 31 C C3D NAD . . . O 2 -13.648 -25.038 54.117 1 30.22 ? C3D NAD 343 D 1 HETATM 32 O O3D NAD . . . O 2 -12.904 -24.578 55.25 1 29.05 ? O3D NAD 343 D 1 HETATM 33 C C2D NAD . . . O 2 -14.407 -23.899 53.461 1 31.42 ? C2D NAD 343 D 1 HETATM 34 O O2D NAD . . . O 2 -15.111 -23.095 54.404 1 31.88 ? O2D NAD 343 D 1 HETATM 35 C C1D NAD . . . O 2 -13.208 -23.139 52.953 1 32.17 ? C1D NAD 343 D 1 HETATM 36 N N1N NAD . . . O 2 -13.607 -22.106 51.993 1 35.11 ? N1N NAD 343 D 1 HETATM 37 C C2N NAD . . . O 2 -13.942 -22.392 50.635 1 36.34 ? C2N NAD 343 D 1 HETATM 38 C C3N NAD . . . O 2 -14.302 -21.319 49.813 1 38.45 ? C3N NAD 343 D 1 HETATM 39 C C7N NAD . . . O 2 -14.682 -21.478 48.334 1 40.16 ? C7N NAD 343 D 1 HETATM 40 O O7N NAD . . . O 2 -15.47 -20.696 47.796 1 41.35 ? O7N NAD 343 D 1 HETATM 41 N N7N NAD . . . O 2 -14.07 -22.465 47.687 1 40.84 ? N7N NAD 343 D 1 HETATM 42 C C4N NAD . . . O 2 -14.308 -20.025 50.34 1 38.65 ? C4N NAD 343 D 1 HETATM 43 C C5N NAD . . . O 2 -13.979 -19.748 51.668 1 37.1 ? C5N NAD 343 D 1 HETATM 44 C C6N NAD . . . O 2 -13.627 -20.792 52.502 1 36.11 ? C6N NAD 343 D 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 884 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #