data_3RVI # _model_server_result.job_id QxMucFT4fgmc3sB4uRLwYQ _model_server_result.datetime_utc '2024-11-08 16:57:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":400}' # _entry.id 3RVI # _exptl.entry_id 3RVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RVI _cell.length_a 103.124 _cell.length_b 103.124 _cell.length_c 170.326 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3RVI _atom_sites.fract_transf_matrix[1][1] 0.009697 _atom_sites.fract_transf_matrix[1][2] 0.005599 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 393 1 IOD IOD . C 2 IOD A 1 394 2 IOD IOD . D 2 IOD A 1 395 3 IOD IOD . E 2 IOD A 1 396 4 IOD IOD . F 2 IOD A 1 397 5 IOD IOD . G 2 IOD A 1 398 6 IOD IOD . H 2 IOD A 1 399 7 IOD IOD . I 3 GOL A 1 400 1 GOL GOL . J 3 GOL A 1 401 2 GOL GOL . K 4 RVI A 1 402 1 RVI RVI . L 5 HOH A 1 403 1 HOH HOH . L 5 HOH A 2 404 2 HOH HOH . L 5 HOH A 3 405 3 HOH HOH . L 5 HOH A 4 406 4 HOH HOH . L 5 HOH A 5 407 5 HOH HOH . L 5 HOH A 6 408 6 HOH HOH . L 5 HOH A 7 409 7 HOH HOH . L 5 HOH A 8 410 8 HOH HOH . L 5 HOH A 9 411 9 HOH HOH . L 5 HOH A 10 412 10 HOH HOH . L 5 HOH A 11 413 11 HOH HOH . L 5 HOH A 12 414 12 HOH HOH . L 5 HOH A 13 415 13 HOH HOH . L 5 HOH A 14 416 14 HOH HOH . L 5 HOH A 15 417 15 HOH HOH . L 5 HOH A 16 418 16 HOH HOH . L 5 HOH A 17 419 17 HOH HOH . L 5 HOH A 18 420 18 HOH HOH . L 5 HOH A 19 421 19 HOH HOH . L 5 HOH A 20 422 20 HOH HOH . L 5 HOH A 21 423 21 HOH HOH . L 5 HOH A 22 424 22 HOH HOH . L 5 HOH A 23 425 23 HOH HOH . L 5 HOH A 24 426 24 HOH HOH . L 5 HOH A 25 427 25 HOH HOH . L 5 HOH A 26 428 26 HOH HOH . L 5 HOH A 27 429 27 HOH HOH . L 5 HOH A 28 430 28 HOH HOH . L 5 HOH A 29 431 29 HOH HOH . L 5 HOH A 30 432 30 HOH HOH . L 5 HOH A 31 433 31 HOH HOH . L 5 HOH A 32 434 32 HOH HOH . L 5 HOH A 33 435 33 HOH HOH . L 5 HOH A 34 436 34 HOH HOH . L 5 HOH A 35 437 35 HOH HOH . L 5 HOH A 36 438 36 HOH HOH . L 5 HOH A 37 439 37 HOH HOH . L 5 HOH A 38 440 38 HOH HOH . L 5 HOH A 39 441 39 HOH HOH . L 5 HOH A 40 442 40 HOH HOH . L 5 HOH A 41 443 41 HOH HOH . L 5 HOH A 42 444 42 HOH HOH . L 5 HOH A 43 445 43 HOH HOH . L 5 HOH A 44 446 44 HOH HOH . L 5 HOH A 45 447 45 HOH HOH . L 5 HOH A 46 448 46 HOH HOH . L 5 HOH A 47 449 47 HOH HOH . L 5 HOH A 48 450 48 HOH HOH . L 5 HOH A 49 451 49 HOH HOH . L 5 HOH A 50 452 50 HOH HOH . L 5 HOH A 51 453 51 HOH HOH . L 5 HOH A 52 454 52 HOH HOH . L 5 HOH A 53 455 53 HOH HOH . L 5 HOH A 54 456 54 HOH HOH . L 5 HOH A 55 457 55 HOH HOH . L 5 HOH A 56 458 56 HOH HOH . L 5 HOH A 57 459 57 HOH HOH . L 5 HOH A 58 460 58 HOH HOH . L 5 HOH A 59 461 59 HOH HOH . L 5 HOH A 60 462 60 HOH HOH . L 5 HOH A 61 463 61 HOH HOH . L 5 HOH A 62 464 62 HOH HOH . L 5 HOH A 63 465 63 HOH HOH . L 5 HOH A 64 466 64 HOH HOH . L 5 HOH A 65 467 65 HOH HOH . L 5 HOH A 66 468 66 HOH HOH . L 5 HOH A 67 469 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 72.86 43.959 -2.715 1 41.41 ? C1 GOL 400 A 1 HETATM 2 O O1 GOL . . . I 3 73.111 42.59 -2.935 1 41.61 ? O1 GOL 400 A 1 HETATM 3 C C2 GOL . . . I 3 73.807 44.503 -1.651 1 41.17 ? C2 GOL 400 A 1 HETATM 4 O O2 GOL . . . I 3 74.293 45.774 -2.02 1 40.2 ? O2 GOL 400 A 1 HETATM 5 C C3 GOL . . . I 3 73.173 44.507 -0.258 1 41.4 ? C3 GOL 400 A 1 HETATM 6 O O3 GOL . . . I 3 71.909 45.134 -0.259 1 41.58 ? O3 GOL 400 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #