data_3RVI
#
_model_server_result.job_id            yPp_249Fl-dCiL5wIYgbzg 
_model_server_result.datetime_utc      '2024-12-21 17:15:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rvi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    3RVI 
#
_exptl.entry_id    3RVI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              443.624 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-{[2-amino-6-(2-methylphenyl)quinolin-3-yl]methyl}-N-(cyclohexylmethyl)pentanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RVI 
_cell.length_a            103.124 
_cell.length_b            103.124 
_cell.length_c            170.326 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RVI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 174 A CYS 155 1_555 A SG CYS 378 A CYS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 A SG CYS 236 A CYS 217 1_555 A SG CYS 401 A CYS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 288 A CYS 269 1_555 A SG CYS 338 A CYS 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C29 H37 N3 O' 
_chem_comp.formula_weight    443.624 
_chem_comp.id                RVI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-{[2-amino-6-(2-methylphenyl)quinolin-3-yl]methyl}-N-(cyclohexylmethyl)pentanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-((2-Amino-6-o-tolylquinolin-3-yl)methyl)-N-(cyclohexylmethyl)pentanamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C4 RVI sing 290 n y 
C4 C5 RVI doub 291 n y 
C4 C3 RVI sing 292 n y 
C17 C5 RVI sing 293 n n 
C5 C6 RVI sing 294 n y 
C6 C1 RVI doub 295 n y 
C6 H6 RVI sing 296 n n 
C8 C7 RVI doub 297 n y 
C10 C7 RVI sing 298 n y 
C9 C8 RVI sing 299 n y 
C8 H8 RVI sing 300 n n 
C11 C10 RVI doub 301 n y 
C10 H10 RVI sing 302 n n 
C14 C15 RVI sing 303 n y 
C19 C15 RVI sing 304 n n 
C15 C16 RVI doub 305 n y 
C17 H17 RVI sing 306 n n 
C17 H17A RVI sing 307 n n 
C17 H17B RVI sing 308 n n 
C19 C20 RVI sing 309 n n 
C31 C20 RVI sing 310 n n 
C20 C21 RVI sing 311 n n 
C20 H20 RVI sing 312 n n 
C21 N22 RVI sing 313 n n 
C21 O30 RVI doub 314 n n 
C25 C24 RVI sing 315 n n 
C23 C24 RVI sing 316 n n 
C24 C29 RVI sing 317 n n 
C24 H24 RVI sing 318 n n 
C25 C26 RVI sing 319 n n 
C26 C27 RVI sing 320 n n 
C26 H26 RVI sing 321 n n 
C26 H26A RVI sing 322 n n 
C27 C28 RVI sing 323 n n 
C29 C28 RVI sing 324 n n 
C28 H28 RVI sing 325 n n 
C28 H28A RVI sing 326 n n 
C25 H25 RVI sing 327 n n 
C25 H25A RVI sing 328 n n 
C27 H27 RVI sing 329 n n 
C27 H27A RVI sing 330 n n 
C29 H29 RVI sing 331 n n 
C29 H29A RVI sing 332 n n 
N22 C23 RVI sing 333 n n 
C23 H23 RVI sing 334 n n 
C23 H23A RVI sing 335 n n 
N22 HN22 RVI sing 336 n n 
C31 C32 RVI sing 337 n n 
C31 H31 RVI sing 338 n n 
C31 H31A RVI sing 339 n n 
C32 C33 RVI sing 340 n n 
C32 H32 RVI sing 341 n n 
C32 H32A RVI sing 342 n n 
C33 H33 RVI sing 343 n n 
C33 H33A RVI sing 344 n n 
C33 H33B RVI sing 345 n n 
C19 H19 RVI sing 346 n n 
C19 H19A RVI sing 347 n n 
N18 C14 RVI sing 348 n n 
C14 N13 RVI doub 349 n y 
N13 C12 RVI sing 350 n y 
N18 HN18 RVI sing 351 n n 
N18 HN1A RVI sing 352 n n 
C16 C11 RVI sing 353 n y 
C16 H16 RVI sing 354 n n 
C12 C11 RVI sing 355 n y 
C12 C9 RVI doub 356 n y 
C9 H9 RVI sing 357 n n 
C3 C2 RVI doub 358 n y 
C3 H3 RVI sing 359 n n 
C2 C1 RVI sing 360 n y 
C2 H2 RVI sing 361 n n 
C1 H1 RVI sing 362 n n 
#
_atom_sites.entry_id                     3RVI 
_atom_sites.fract_transf_matrix[1][1]    0.009697 
_atom_sites.fract_transf_matrix[1][2]    0.005599 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011197 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 393 1 IOD IOD . 
C 2 IOD A 1 394 2 IOD IOD . 
D 2 IOD A 1 395 3 IOD IOD . 
E 2 IOD A 1 396 4 IOD IOD . 
F 2 IOD A 1 397 5 IOD IOD . 
G 2 IOD A 1 398 6 IOD IOD . 
H 2 IOD A 1 399 7 IOD IOD . 
I 3 GOL A 1 400 1 GOL GOL . 
J 3 GOL A 1 401 2 GOL GOL . 
K 4 RVI A 1 402 1 RVI RVI . 
L 5 HOH A 1 403 1 HOH HOH . 
L 5 HOH A 2 404 2 HOH HOH . 
L 5 HOH A 3 405 3 HOH HOH . 
L 5 HOH A 4 406 4 HOH HOH . 
L 5 HOH A 5 407 5 HOH HOH . 
L 5 HOH A 6 408 6 HOH HOH . 
L 5 HOH A 7 409 7 HOH HOH . 
L 5 HOH A 8 410 8 HOH HOH . 
L 5 HOH A 9 411 9 HOH HOH . 
L 5 HOH A 10 412 10 HOH HOH . 
L 5 HOH A 11 413 11 HOH HOH . 
L 5 HOH A 12 414 12 HOH HOH . 
L 5 HOH A 13 415 13 HOH HOH . 
L 5 HOH A 14 416 14 HOH HOH . 
L 5 HOH A 15 417 15 HOH HOH . 
L 5 HOH A 16 418 16 HOH HOH . 
L 5 HOH A 17 419 17 HOH HOH . 
L 5 HOH A 18 420 18 HOH HOH . 
L 5 HOH A 19 421 19 HOH HOH . 
L 5 HOH A 20 422 20 HOH HOH . 
L 5 HOH A 21 423 21 HOH HOH . 
L 5 HOH A 22 424 22 HOH HOH . 
L 5 HOH A 23 425 23 HOH HOH . 
L 5 HOH A 24 426 24 HOH HOH . 
L 5 HOH A 25 427 25 HOH HOH . 
L 5 HOH A 26 428 26 HOH HOH . 
L 5 HOH A 27 429 27 HOH HOH . 
L 5 HOH A 28 430 28 HOH HOH . 
L 5 HOH A 29 431 29 HOH HOH . 
L 5 HOH A 30 432 30 HOH HOH . 
L 5 HOH A 31 433 31 HOH HOH . 
L 5 HOH A 32 434 32 HOH HOH . 
L 5 HOH A 33 435 33 HOH HOH . 
L 5 HOH A 34 436 34 HOH HOH . 
L 5 HOH A 35 437 35 HOH HOH . 
L 5 HOH A 36 438 36 HOH HOH . 
L 5 HOH A 37 439 37 HOH HOH . 
L 5 HOH A 38 440 38 HOH HOH . 
L 5 HOH A 39 441 39 HOH HOH . 
L 5 HOH A 40 442 40 HOH HOH . 
L 5 HOH A 41 443 41 HOH HOH . 
L 5 HOH A 42 444 42 HOH HOH . 
L 5 HOH A 43 445 43 HOH HOH . 
L 5 HOH A 44 446 44 HOH HOH . 
L 5 HOH A 45 447 45 HOH HOH . 
L 5 HOH A 46 448 46 HOH HOH . 
L 5 HOH A 47 449 47 HOH HOH . 
L 5 HOH A 48 450 48 HOH HOH . 
L 5 HOH A 49 451 49 HOH HOH . 
L 5 HOH A 50 452 50 HOH HOH . 
L 5 HOH A 51 453 51 HOH HOH . 
L 5 HOH A 52 454 52 HOH HOH . 
L 5 HOH A 53 455 53 HOH HOH . 
L 5 HOH A 54 456 54 HOH HOH . 
L 5 HOH A 55 457 55 HOH HOH . 
L 5 HOH A 56 458 56 HOH HOH . 
L 5 HOH A 57 459 57 HOH HOH . 
L 5 HOH A 58 460 58 HOH HOH . 
L 5 HOH A 59 461 59 HOH HOH . 
L 5 HOH A 60 462 60 HOH HOH . 
L 5 HOH A 61 463 61 HOH HOH . 
L 5 HOH A 62 464 62 HOH HOH . 
L 5 HOH A 63 465 63 HOH HOH . 
L 5 HOH A 64 466 64 HOH HOH . 
L 5 HOH A 65 467 65 HOH HOH . 
L 5 HOH A 66 468 66 HOH HOH . 
L 5 HOH A 67 469 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 RVI . . . K 4 70.703 49.963 12.258 1 20.59 ? C4 RVI 402 A 1 
HETATM 2 C C5 RVI . . . K 4 71.821 49.133 12.458 1 21.15 ? C5 RVI 402 A 1 
HETATM 3 C C6 RVI . . . K 4 72.605 49.296 13.6 1 20.81 ? C6 RVI 402 A 1 
HETATM 4 C C7 RVI . . . K 4 69.876 49.848 11.138 1 20.76 ? C7 RVI 402 A 1 
HETATM 5 C C8 RVI . . . K 4 69.867 50.864 10.179 1 20.84 ? C8 RVI 402 A 1 
HETATM 6 C C10 RVI . . . K 4 69.036 48.741 10.982 1 20.72 ? C10 RVI 402 A 1 
HETATM 7 C C15 RVI . . . K 4 66.551 47.475 8.546 1 21.78 ? C15 RVI 402 A 1 
HETATM 8 C C17 RVI . . . K 4 72.223 48.035 11.456 1 21.58 ? C17 RVI 402 A 1 
HETATM 9 C C20 RVI . . . K 4 64.178 46.643 8.65 1 24.9 ? C20 RVI 402 A 1 
HETATM 10 C C21 RVI . . . K 4 63.947 47.164 10.075 1 26.02 ? C21 RVI 402 A 1 
HETATM 11 C C24 RVI . . . K 4 64.042 50.09 11.995 1 26.84 ? C24 RVI 402 A 1 
HETATM 12 C C26 RVI . . . K 4 65.024 52.392 11.736 1 27.83 ? C26 RVI 402 A 1 
HETATM 13 C C28 RVI . . . K 4 66.3 50.573 12.987 1 27 ? C28 RVI 402 A 1 
HETATM 14 C C25 RVI . . . K 4 64.17 51.296 11.061 1 27.26 ? C25 RVI 402 A 1 
HETATM 15 C C27 RVI . . . K 4 66.407 51.865 12.163 1 27.23 ? C27 RVI 402 A 1 
HETATM 16 C C29 RVI . . . K 4 65.438 49.519 12.269 1 27.32 ? C29 RVI 402 A 1 
HETATM 17 C C23 RVI . . . K 4 63.075 49.027 11.446 1 27.15 ? C23 RVI 402 A 1 
HETATM 18 N N22 RVI . . . K 4 63.444 48.399 10.154 1 26.81 ? N22 RVI 402 A 1 
HETATM 19 O O30 RVI . . . K 4 64.194 46.45 11.051 1 26.79 ? O30 RVI 402 A 1 
HETATM 20 C C31 RVI . . . K 4 63.251 45.432 8.416 1 25.32 ? C31 RVI 402 A 1 
HETATM 21 C C32 RVI . . . K 4 61.775 45.822 8.622 1 26 ? C32 RVI 402 A 1 
HETATM 22 C C33 RVI . . . K 4 60.84 44.61 8.709 1 25.72 ? C33 RVI 402 A 1 
HETATM 23 C C19 RVI . . . K 4 65.648 46.243 8.416 1 22.77 ? C19 RVI 402 A 1 
HETATM 24 C C14 RVI . . . K 4 66.603 48.532 7.626 1 20.7 ? C14 RVI 402 A 1 
HETATM 25 N N13 RVI . . . K 4 67.421 49.579 7.827 1 20.58 ? N13 RVI 402 A 1 
HETATM 26 N N18 RVI . . . K 4 65.852 48.527 6.529 1 19.31 ? N18 RVI 402 A 1 
HETATM 27 C C16 RVI . . . K 4 67.372 47.545 9.675 1 21.39 ? C16 RVI 402 A 1 
HETATM 28 C C11 RVI . . . K 4 68.212 48.645 9.858 1 21.05 ? C11 RVI 402 A 1 
HETATM 29 C C12 RVI . . . K 4 68.214 49.663 8.905 1 20.5 ? C12 RVI 402 A 1 
HETATM 30 C C9 RVI . . . K 4 69.039 50.771 9.065 1 20.44 ? C9 RVI 402 A 1 
HETATM 31 C C3 RVI . . . K 4 70.392 50.944 13.204 1 19.76 ? C3 RVI 402 A 1 
HETATM 32 C C2 RVI . . . K 4 71.179 51.1 14.34 1 19.91 ? C2 RVI 402 A 1 
HETATM 33 C C1 RVI . . . K 4 72.285 50.279 14.535 1 20.33 ? C1 RVI 402 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           33 
#