data_3RVN
#
_model_server_result.job_id            TYXwWsd5ge2jA9a56R9vig 
_model_server_result.datetime_utc      '2024-10-11 12:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":137}' 
#
_entry.id    3RVN 
#
_exptl.entry_id    3RVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RVN 
_cell.length_a            53.436 
_cell.length_b            53.613 
_cell.length_c            161.31 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,S 1 1 
B,M,N,O,P,Q,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 Q N N 
? 5 R N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 119 n n 
C1 C2 GOL sing 120 n n 
C1 H11 GOL sing 121 n n 
C1 H12 GOL sing 122 n n 
O1 HO1 GOL sing 123 n n 
C2 O2 GOL sing 124 n n 
C2 C3 GOL sing 125 n n 
C2 H2 GOL sing 126 n n 
O2 HO2 GOL sing 127 n n 
C3 O3 GOL sing 128 n n 
C3 H31 GOL sing 129 n n 
C3 H32 GOL sing 130 n n 
O3 HO3 GOL sing 131 n n 
#
_atom_sites.entry_id                     3RVN 
_atom_sites.fract_transf_matrix[1][1]    0.018714 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006199 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 130 130 MN MN . 
D 3 BEF A 1 131 131 BEF BEF . 
E 4 SO4 A 1 132 1 SO4 SO4 . 
F 4 SO4 A 1 133 4 SO4 SO4 . 
G 5 GOL A 1 134 1 GOL GOL . 
H 5 GOL A 1 135 2 GOL GOL . 
I 5 GOL A 1 136 3 GOL GOL . 
J 5 GOL A 1 137 5 GOL GOL . 
K 5 GOL A 1 138 6 GOL GOL . 
L 5 GOL A 1 139 8 GOL GOL . 
M 2 MN B 1 130 130 MN MN . 
N 3 BEF B 1 131 131 BEF BEF . 
O 4 SO4 B 1 132 2 SO4 SO4 . 
P 4 SO4 B 1 133 3 SO4 SO4 . 
Q 5 GOL B 1 134 4 GOL GOL . 
R 5 GOL B 1 135 7 GOL GOL . 
S 6 HOH A 1 140 140 HOH HOH . 
S 6 HOH A 2 141 141 HOH HOH . 
S 6 HOH A 3 142 1 HOH HOH . 
S 6 HOH A 4 143 3 HOH HOH . 
S 6 HOH A 5 144 4 HOH HOH . 
S 6 HOH A 6 145 145 HOH HOH . 
S 6 HOH A 7 146 6 HOH HOH . 
S 6 HOH A 8 147 147 HOH HOH . 
S 6 HOH A 9 148 7 HOH HOH . 
S 6 HOH A 10 149 8 HOH HOH . 
S 6 HOH A 11 150 150 HOH HOH . 
S 6 HOH A 12 151 151 HOH HOH . 
S 6 HOH A 13 152 152 HOH HOH . 
S 6 HOH A 14 153 153 HOH HOH . 
S 6 HOH A 15 154 9 HOH HOH . 
S 6 HOH A 16 155 155 HOH HOH . 
S 6 HOH A 17 156 156 HOH HOH . 
S 6 HOH A 18 157 10 HOH HOH . 
S 6 HOH A 19 158 11 HOH HOH . 
S 6 HOH A 20 159 14 HOH HOH . 
S 6 HOH A 21 160 160 HOH HOH . 
S 6 HOH A 22 161 17 HOH HOH . 
S 6 HOH A 23 162 18 HOH HOH . 
S 6 HOH A 24 163 20 HOH HOH . 
S 6 HOH A 25 164 22 HOH HOH . 
S 6 HOH A 26 165 23 HOH HOH . 
S 6 HOH A 27 166 166 HOH HOH . 
S 6 HOH A 28 167 167 HOH HOH . 
S 6 HOH A 29 168 25 HOH HOH . 
S 6 HOH A 30 169 169 HOH HOH . 
S 6 HOH A 31 170 26 HOH HOH . 
S 6 HOH A 32 171 27 HOH HOH . 
S 6 HOH A 33 172 172 HOH HOH . 
S 6 HOH A 34 173 173 HOH HOH . 
S 6 HOH A 35 174 32 HOH HOH . 
S 6 HOH A 36 175 175 HOH HOH . 
S 6 HOH A 37 176 33 HOH HOH . 
S 6 HOH A 38 177 177 HOH HOH . 
S 6 HOH A 39 178 34 HOH HOH . 
S 6 HOH A 40 179 37 HOH HOH . 
S 6 HOH A 41 180 180 HOH HOH . 
S 6 HOH A 42 181 181 HOH HOH . 
S 6 HOH A 43 182 38 HOH HOH . 
S 6 HOH A 44 183 40 HOH HOH . 
S 6 HOH A 45 184 41 HOH HOH . 
S 6 HOH A 46 185 185 HOH HOH . 
S 6 HOH A 47 186 186 HOH HOH . 
S 6 HOH A 48 187 187 HOH HOH . 
S 6 HOH A 49 188 42 HOH HOH . 
S 6 HOH A 50 189 189 HOH HOH . 
S 6 HOH A 51 190 190 HOH HOH . 
S 6 HOH A 52 191 44 HOH HOH . 
S 6 HOH A 53 192 192 HOH HOH . 
S 6 HOH A 54 193 45 HOH HOH . 
S 6 HOH A 55 194 46 HOH HOH . 
S 6 HOH A 56 195 47 HOH HOH . 
S 6 HOH A 57 196 48 HOH HOH . 
S 6 HOH A 58 197 197 HOH HOH . 
S 6 HOH A 59 198 198 HOH HOH . 
S 6 HOH A 60 199 50 HOH HOH . 
S 6 HOH A 61 200 52 HOH HOH . 
S 6 HOH A 62 201 58 HOH HOH . 
S 6 HOH A 63 202 59 HOH HOH . 
S 6 HOH A 64 203 60 HOH HOH . 
S 6 HOH A 65 204 66 HOH HOH . 
S 6 HOH A 66 205 67 HOH HOH . 
S 6 HOH A 67 206 206 HOH HOH . 
S 6 HOH A 68 207 207 HOH HOH . 
S 6 HOH A 69 208 208 HOH HOH . 
S 6 HOH A 70 209 209 HOH HOH . 
S 6 HOH A 71 210 70 HOH HOH . 
S 6 HOH A 72 211 71 HOH HOH . 
S 6 HOH A 73 212 73 HOH HOH . 
S 6 HOH A 74 213 213 HOH HOH . 
S 6 HOH A 75 214 214 HOH HOH . 
S 6 HOH A 76 215 215 HOH HOH . 
S 6 HOH A 77 216 216 HOH HOH . 
S 6 HOH A 78 217 217 HOH HOH . 
S 6 HOH A 79 218 218 HOH HOH . 
S 6 HOH A 80 219 219 HOH HOH . 
S 6 HOH A 81 220 75 HOH HOH . 
S 6 HOH A 82 221 221 HOH HOH . 
S 6 HOH A 83 222 222 HOH HOH . 
S 6 HOH A 84 223 76 HOH HOH . 
S 6 HOH A 85 224 77 HOH HOH . 
S 6 HOH A 86 225 225 HOH HOH . 
S 6 HOH A 87 226 78 HOH HOH . 
S 6 HOH A 88 227 227 HOH HOH . 
S 6 HOH A 89 228 79 HOH HOH . 
S 6 HOH A 90 229 81 HOH HOH . 
S 6 HOH A 91 230 84 HOH HOH . 
S 6 HOH A 92 231 231 HOH HOH . 
S 6 HOH A 93 232 85 HOH HOH . 
S 6 HOH A 94 233 87 HOH HOH . 
S 6 HOH A 95 234 90 HOH HOH . 
S 6 HOH A 96 235 91 HOH HOH . 
S 6 HOH A 97 236 92 HOH HOH . 
S 6 HOH A 98 237 237 HOH HOH . 
S 6 HOH A 99 238 93 HOH HOH . 
S 6 HOH A 100 239 239 HOH HOH . 
S 6 HOH A 101 240 95 HOH HOH . 
S 6 HOH A 102 241 97 HOH HOH . 
S 6 HOH A 103 242 101 HOH HOH . 
S 6 HOH A 104 243 243 HOH HOH . 
S 6 HOH A 105 244 102 HOH HOH . 
S 6 HOH A 106 245 104 HOH HOH . 
S 6 HOH A 107 246 105 HOH HOH . 
S 6 HOH A 108 247 106 HOH HOH . 
S 6 HOH A 109 248 109 HOH HOH . 
S 6 HOH A 110 249 111 HOH HOH . 
S 6 HOH A 111 250 113 HOH HOH . 
S 6 HOH A 112 251 117 HOH HOH . 
S 6 HOH A 113 252 120 HOH HOH . 
S 6 HOH A 114 253 121 HOH HOH . 
S 6 HOH A 115 254 122 HOH HOH . 
S 6 HOH A 116 255 123 HOH HOH . 
S 6 HOH A 117 256 124 HOH HOH . 
S 6 HOH A 118 257 125 HOH HOH . 
S 6 HOH A 119 258 126 HOH HOH . 
S 6 HOH A 120 259 127 HOH HOH . 
S 6 HOH A 121 260 129 HOH HOH . 
S 6 HOH A 122 261 130 HOH HOH . 
S 6 HOH A 123 262 134 HOH HOH . 
S 6 HOH A 124 263 137 HOH HOH . 
S 6 HOH A 125 264 138 HOH HOH . 
T 6 HOH B 1 136 136 HOH HOH . 
T 6 HOH B 2 137 2 HOH HOH . 
T 6 HOH B 3 138 5 HOH HOH . 
T 6 HOH B 4 139 139 HOH HOH . 
T 6 HOH B 5 140 12 HOH HOH . 
T 6 HOH B 6 141 13 HOH HOH . 
T 6 HOH B 7 142 142 HOH HOH . 
T 6 HOH B 8 143 143 HOH HOH . 
T 6 HOH B 9 144 144 HOH HOH . 
T 6 HOH B 10 145 15 HOH HOH . 
T 6 HOH B 11 146 146 HOH HOH . 
T 6 HOH B 12 147 16 HOH HOH . 
T 6 HOH B 13 148 148 HOH HOH . 
T 6 HOH B 14 149 149 HOH HOH . 
T 6 HOH B 15 150 19 HOH HOH . 
T 6 HOH B 16 151 21 HOH HOH . 
T 6 HOH B 17 152 24 HOH HOH . 
T 6 HOH B 18 153 28 HOH HOH . 
T 6 HOH B 19 154 154 HOH HOH . 
T 6 HOH B 20 155 29 HOH HOH . 
T 6 HOH B 21 156 30 HOH HOH . 
T 6 HOH B 22 157 157 HOH HOH . 
T 6 HOH B 23 158 158 HOH HOH . 
T 6 HOH B 24 159 159 HOH HOH . 
T 6 HOH B 25 160 31 HOH HOH . 
T 6 HOH B 26 161 161 HOH HOH . 
T 6 HOH B 27 162 162 HOH HOH . 
T 6 HOH B 28 163 163 HOH HOH . 
T 6 HOH B 29 164 164 HOH HOH . 
T 6 HOH B 30 165 165 HOH HOH . 
T 6 HOH B 31 166 35 HOH HOH . 
T 6 HOH B 32 167 36 HOH HOH . 
T 6 HOH B 33 168 168 HOH HOH . 
T 6 HOH B 34 169 39 HOH HOH . 
T 6 HOH B 35 170 170 HOH HOH . 
T 6 HOH B 36 171 171 HOH HOH . 
T 6 HOH B 37 172 43 HOH HOH . 
T 6 HOH B 38 173 49 HOH HOH . 
T 6 HOH B 39 174 174 HOH HOH . 
T 6 HOH B 40 175 51 HOH HOH . 
T 6 HOH B 41 176 176 HOH HOH . 
T 6 HOH B 42 177 53 HOH HOH . 
T 6 HOH B 43 178 178 HOH HOH . 
T 6 HOH B 44 179 179 HOH HOH . 
T 6 HOH B 45 180 54 HOH HOH . 
T 6 HOH B 46 181 55 HOH HOH . 
T 6 HOH B 47 182 182 HOH HOH . 
T 6 HOH B 48 183 183 HOH HOH . 
T 6 HOH B 49 184 184 HOH HOH . 
T 6 HOH B 50 185 56 HOH HOH . 
T 6 HOH B 51 186 57 HOH HOH . 
T 6 HOH B 52 187 61 HOH HOH . 
T 6 HOH B 53 188 188 HOH HOH . 
T 6 HOH B 54 189 62 HOH HOH . 
T 6 HOH B 55 190 63 HOH HOH . 
T 6 HOH B 56 191 191 HOH HOH . 
T 6 HOH B 57 192 64 HOH HOH . 
T 6 HOH B 58 193 193 HOH HOH . 
T 6 HOH B 59 194 194 HOH HOH . 
T 6 HOH B 60 195 195 HOH HOH . 
T 6 HOH B 61 196 196 HOH HOH . 
T 6 HOH B 62 197 65 HOH HOH . 
T 6 HOH B 63 198 68 HOH HOH . 
T 6 HOH B 64 199 199 HOH HOH . 
T 6 HOH B 65 200 200 HOH HOH . 
T 6 HOH B 66 201 201 HOH HOH . 
T 6 HOH B 67 202 202 HOH HOH . 
T 6 HOH B 68 203 203 HOH HOH . 
T 6 HOH B 69 204 204 HOH HOH . 
T 6 HOH B 70 205 205 HOH HOH . 
T 6 HOH B 71 206 69 HOH HOH . 
T 6 HOH B 72 207 72 HOH HOH . 
T 6 HOH B 73 208 74 HOH HOH . 
T 6 HOH B 74 209 80 HOH HOH . 
T 6 HOH B 75 210 210 HOH HOH . 
T 6 HOH B 76 211 211 HOH HOH . 
T 6 HOH B 77 212 212 HOH HOH . 
T 6 HOH B 78 213 82 HOH HOH . 
T 6 HOH B 79 214 83 HOH HOH . 
T 6 HOH B 80 215 86 HOH HOH . 
T 6 HOH B 81 216 88 HOH HOH . 
T 6 HOH B 82 217 89 HOH HOH . 
T 6 HOH B 83 218 94 HOH HOH . 
T 6 HOH B 84 219 96 HOH HOH . 
T 6 HOH B 85 220 220 HOH HOH . 
T 6 HOH B 86 221 98 HOH HOH . 
T 6 HOH B 87 222 99 HOH HOH . 
T 6 HOH B 88 223 223 HOH HOH . 
T 6 HOH B 89 224 224 HOH HOH . 
T 6 HOH B 90 225 100 HOH HOH . 
T 6 HOH B 91 226 226 HOH HOH . 
T 6 HOH B 92 227 103 HOH HOH . 
T 6 HOH B 93 228 228 HOH HOH . 
T 6 HOH B 94 229 229 HOH HOH . 
T 6 HOH B 95 230 230 HOH HOH . 
T 6 HOH B 96 231 107 HOH HOH . 
T 6 HOH B 97 232 232 HOH HOH . 
T 6 HOH B 98 233 233 HOH HOH . 
T 6 HOH B 99 234 234 HOH HOH . 
T 6 HOH B 100 235 235 HOH HOH . 
T 6 HOH B 101 236 236 HOH HOH . 
T 6 HOH B 102 237 108 HOH HOH . 
T 6 HOH B 103 238 238 HOH HOH . 
T 6 HOH B 104 239 110 HOH HOH . 
T 6 HOH B 105 240 240 HOH HOH . 
T 6 HOH B 106 241 241 HOH HOH . 
T 6 HOH B 107 242 242 HOH HOH . 
T 6 HOH B 108 243 112 HOH HOH . 
T 6 HOH B 109 244 244 HOH HOH . 
T 6 HOH B 110 245 245 HOH HOH . 
T 6 HOH B 111 246 114 HOH HOH . 
T 6 HOH B 112 247 115 HOH HOH . 
T 6 HOH B 113 248 116 HOH HOH . 
T 6 HOH B 114 249 118 HOH HOH . 
T 6 HOH B 115 250 119 HOH HOH . 
T 6 HOH B 116 251 128 HOH HOH . 
T 6 HOH B 117 252 131 HOH HOH . 
T 6 HOH B 118 253 132 HOH HOH . 
T 6 HOH B 119 254 133 HOH HOH . 
T 6 HOH B 120 255 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 5 6.485 31.569 35.024 1 68.96 ? C1 GOL 137 A 1 
HETATM 2 O O1 GOL . . . J 5 6.715 31.295 33.656 1 73.48 ? O1 GOL 137 A 1 
HETATM 3 C C2 GOL . . . J 5 7.805 31.905 35.715 1 59.13 ? C2 GOL 137 A 1 
HETATM 4 O O2 GOL . . . J 5 8.868 31.722 34.801 1 63.18 ? O2 GOL 137 A 1 
HETATM 5 C C3 GOL . . . J 5 8.004 31.014 36.94 1 52.97 ? C3 GOL 137 A 1 
HETATM 6 O O3 GOL . . . J 5 7.1 31.366 37.971 1 59.22 ? O3 GOL 137 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#