data_3RVP # _model_server_result.job_id xWUbpg3GuJQ0fGwkRHhrVg _model_server_result.datetime_utc '2024-10-11 12:23:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":137}' # _entry.id 3RVP # _exptl.entry_id 3RVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RVP _cell.length_a 53.487 _cell.length_b 53.626 _cell.length_c 160.416 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,Z 1 1 B,O,P,Q,R,S,T,U,V,W,X,Y,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 119 n n C1 C2 GOL sing 120 n n C1 H11 GOL sing 121 n n C1 H12 GOL sing 122 n n O1 HO1 GOL sing 123 n n C2 O2 GOL sing 124 n n C2 C3 GOL sing 125 n n C2 H2 GOL sing 126 n n O2 HO2 GOL sing 127 n n C3 O3 GOL sing 128 n n C3 H31 GOL sing 129 n n C3 H32 GOL sing 130 n n O3 HO3 GOL sing 131 n n # _atom_sites.entry_id 3RVP _atom_sites.fract_transf_matrix[1][1] 0.018696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 130 130 MN MN . D 3 BEF A 1 131 131 BEF BEF . E 4 SO4 A 1 132 1 SO4 SO4 . F 4 SO4 A 1 133 2 SO4 SO4 . G 4 SO4 A 1 134 7 SO4 SO4 . H 5 GOL A 1 135 1 GOL GOL . I 5 GOL A 1 136 2 GOL GOL . J 5 GOL A 1 137 4 GOL GOL . K 5 GOL A 1 138 8 GOL GOL . L 5 GOL A 1 139 9 GOL GOL . M 5 GOL A 1 140 10 GOL GOL . N 6 MG A 1 141 3 MG MG . O 2 MN B 1 130 130 MN MN . P 3 BEF B 1 131 131 BEF BEF . Q 4 SO4 B 1 132 4 SO4 SO4 . R 4 SO4 B 1 133 5 SO4 SO4 . S 4 SO4 B 1 134 6 SO4 SO4 . T 5 GOL B 1 135 5 GOL GOL . U 5 GOL B 1 136 6 GOL GOL . V 5 GOL B 1 137 7 GOL GOL . W 5 GOL B 1 138 11 GOL GOL . X 5 GOL B 1 139 12 GOL GOL . Y 6 MG B 1 140 1 MG MG . Z 7 HOH A 1 142 2 HOH HOH . Z 7 HOH A 2 143 3 HOH HOH . Z 7 HOH A 3 144 4 HOH HOH . Z 7 HOH A 4 145 145 HOH HOH . Z 7 HOH A 5 146 146 HOH HOH . Z 7 HOH A 6 147 147 HOH HOH . Z 7 HOH A 7 148 148 HOH HOH . Z 7 HOH A 8 149 5 HOH HOH . Z 7 HOH A 9 150 6 HOH HOH . Z 7 HOH A 10 151 7 HOH HOH . Z 7 HOH A 11 152 8 HOH HOH . Z 7 HOH A 12 153 153 HOH HOH . Z 7 HOH A 13 154 154 HOH HOH . Z 7 HOH A 14 155 155 HOH HOH . Z 7 HOH A 15 156 9 HOH HOH . Z 7 HOH A 16 157 157 HOH HOH . Z 7 HOH A 17 158 158 HOH HOH . Z 7 HOH A 18 159 159 HOH HOH . Z 7 HOH A 19 160 160 HOH HOH . Z 7 HOH A 20 161 12 HOH HOH . Z 7 HOH A 21 162 13 HOH HOH . Z 7 HOH A 22 163 163 HOH HOH . Z 7 HOH A 23 164 14 HOH HOH . Z 7 HOH A 24 165 165 HOH HOH . Z 7 HOH A 25 166 166 HOH HOH . Z 7 HOH A 26 167 15 HOH HOH . Z 7 HOH A 27 168 168 HOH HOH . Z 7 HOH A 28 169 169 HOH HOH . Z 7 HOH A 29 170 170 HOH HOH . Z 7 HOH A 30 171 18 HOH HOH . Z 7 HOH A 31 172 19 HOH HOH . Z 7 HOH A 32 173 21 HOH HOH . Z 7 HOH A 33 174 174 HOH HOH . Z 7 HOH A 34 175 25 HOH HOH . Z 7 HOH A 35 176 176 HOH HOH . Z 7 HOH A 36 177 177 HOH HOH . Z 7 HOH A 37 178 26 HOH HOH . Z 7 HOH A 38 179 179 HOH HOH . Z 7 HOH A 39 180 180 HOH HOH . Z 7 HOH A 40 181 28 HOH HOH . Z 7 HOH A 41 182 29 HOH HOH . Z 7 HOH A 42 183 30 HOH HOH . Z 7 HOH A 43 184 31 HOH HOH . Z 7 HOH A 44 185 33 HOH HOH . Z 7 HOH A 45 186 34 HOH HOH . Z 7 HOH A 46 187 36 HOH HOH . Z 7 HOH A 47 188 37 HOH HOH . Z 7 HOH A 48 189 38 HOH HOH . Z 7 HOH A 49 190 39 HOH HOH . Z 7 HOH A 50 191 43 HOH HOH . Z 7 HOH A 51 192 45 HOH HOH . Z 7 HOH A 52 193 46 HOH HOH . Z 7 HOH A 53 194 48 HOH HOH . Z 7 HOH A 54 195 51 HOH HOH . Z 7 HOH A 55 196 52 HOH HOH . Z 7 HOH A 56 197 53 HOH HOH . Z 7 HOH A 57 198 54 HOH HOH . Z 7 HOH A 58 199 56 HOH HOH . Z 7 HOH A 59 200 57 HOH HOH . Z 7 HOH A 60 201 60 HOH HOH . Z 7 HOH A 61 202 63 HOH HOH . Z 7 HOH A 62 203 64 HOH HOH . Z 7 HOH A 63 204 66 HOH HOH . Z 7 HOH A 64 205 67 HOH HOH . Z 7 HOH A 65 206 74 HOH HOH . Z 7 HOH A 66 207 75 HOH HOH . Z 7 HOH A 67 208 76 HOH HOH . Z 7 HOH A 68 209 82 HOH HOH . Z 7 HOH A 69 210 83 HOH HOH . Z 7 HOH A 70 211 85 HOH HOH . Z 7 HOH A 71 212 87 HOH HOH . Z 7 HOH A 72 213 88 HOH HOH . Z 7 HOH A 73 214 90 HOH HOH . Z 7 HOH A 74 215 91 HOH HOH . Z 7 HOH A 75 216 94 HOH HOH . Z 7 HOH A 76 217 96 HOH HOH . Z 7 HOH A 77 218 98 HOH HOH . Z 7 HOH A 78 219 101 HOH HOH . Z 7 HOH A 79 220 102 HOH HOH . Z 7 HOH A 80 221 103 HOH HOH . Z 7 HOH A 81 222 105 HOH HOH . Z 7 HOH A 82 223 106 HOH HOH . Z 7 HOH A 83 224 108 HOH HOH . Z 7 HOH A 84 225 110 HOH HOH . Z 7 HOH A 85 226 112 HOH HOH . Z 7 HOH A 86 227 114 HOH HOH . Z 7 HOH A 87 228 118 HOH HOH . Z 7 HOH A 88 229 119 HOH HOH . Z 7 HOH A 89 230 121 HOH HOH . Z 7 HOH A 90 231 123 HOH HOH . Z 7 HOH A 91 232 124 HOH HOH . Z 7 HOH A 92 233 125 HOH HOH . Z 7 HOH A 93 234 129 HOH HOH . Z 7 HOH A 94 235 133 HOH HOH . Z 7 HOH A 95 236 136 HOH HOH . Z 7 HOH A 96 237 137 HOH HOH . Z 7 HOH A 97 238 138 HOH HOH . Z 7 HOH A 98 239 139 HOH HOH . AA 7 HOH B 1 141 141 HOH HOH . AA 7 HOH B 2 142 142 HOH HOH . AA 7 HOH B 3 143 143 HOH HOH . AA 7 HOH B 4 144 144 HOH HOH . AA 7 HOH B 5 145 1 HOH HOH . AA 7 HOH B 6 146 10 HOH HOH . AA 7 HOH B 7 147 11 HOH HOH . AA 7 HOH B 8 148 16 HOH HOH . AA 7 HOH B 9 149 149 HOH HOH . AA 7 HOH B 10 150 150 HOH HOH . AA 7 HOH B 11 151 151 HOH HOH . AA 7 HOH B 12 152 152 HOH HOH . AA 7 HOH B 13 153 17 HOH HOH . AA 7 HOH B 14 154 20 HOH HOH . AA 7 HOH B 15 155 22 HOH HOH . AA 7 HOH B 16 156 156 HOH HOH . AA 7 HOH B 17 157 23 HOH HOH . AA 7 HOH B 18 158 24 HOH HOH . AA 7 HOH B 19 159 27 HOH HOH . AA 7 HOH B 20 160 32 HOH HOH . AA 7 HOH B 21 161 161 HOH HOH . AA 7 HOH B 22 162 162 HOH HOH . AA 7 HOH B 23 163 35 HOH HOH . AA 7 HOH B 24 164 164 HOH HOH . AA 7 HOH B 25 165 40 HOH HOH . AA 7 HOH B 26 166 41 HOH HOH . AA 7 HOH B 27 167 167 HOH HOH . AA 7 HOH B 28 168 42 HOH HOH . AA 7 HOH B 29 169 44 HOH HOH . AA 7 HOH B 30 170 47 HOH HOH . AA 7 HOH B 31 171 171 HOH HOH . AA 7 HOH B 32 172 172 HOH HOH . AA 7 HOH B 33 173 173 HOH HOH . AA 7 HOH B 34 174 49 HOH HOH . AA 7 HOH B 35 175 175 HOH HOH . AA 7 HOH B 36 176 50 HOH HOH . AA 7 HOH B 37 177 55 HOH HOH . AA 7 HOH B 38 178 178 HOH HOH . AA 7 HOH B 39 179 58 HOH HOH . AA 7 HOH B 40 180 59 HOH HOH . AA 7 HOH B 41 181 61 HOH HOH . AA 7 HOH B 42 182 62 HOH HOH . AA 7 HOH B 43 183 65 HOH HOH . AA 7 HOH B 44 184 68 HOH HOH . AA 7 HOH B 45 185 69 HOH HOH . AA 7 HOH B 46 186 70 HOH HOH . AA 7 HOH B 47 187 71 HOH HOH . AA 7 HOH B 48 188 72 HOH HOH . AA 7 HOH B 49 189 73 HOH HOH . AA 7 HOH B 50 190 77 HOH HOH . AA 7 HOH B 51 191 78 HOH HOH . AA 7 HOH B 52 192 79 HOH HOH . AA 7 HOH B 53 193 80 HOH HOH . AA 7 HOH B 54 194 81 HOH HOH . AA 7 HOH B 55 195 84 HOH HOH . AA 7 HOH B 56 196 86 HOH HOH . AA 7 HOH B 57 197 89 HOH HOH . AA 7 HOH B 58 198 92 HOH HOH . AA 7 HOH B 59 199 93 HOH HOH . AA 7 HOH B 60 200 95 HOH HOH . AA 7 HOH B 61 201 97 HOH HOH . AA 7 HOH B 62 202 99 HOH HOH . AA 7 HOH B 63 203 100 HOH HOH . AA 7 HOH B 64 204 104 HOH HOH . AA 7 HOH B 65 205 107 HOH HOH . AA 7 HOH B 66 206 109 HOH HOH . AA 7 HOH B 67 207 111 HOH HOH . AA 7 HOH B 68 208 113 HOH HOH . AA 7 HOH B 69 209 115 HOH HOH . AA 7 HOH B 70 210 116 HOH HOH . AA 7 HOH B 71 211 117 HOH HOH . AA 7 HOH B 72 212 120 HOH HOH . AA 7 HOH B 73 213 122 HOH HOH . AA 7 HOH B 74 214 126 HOH HOH . AA 7 HOH B 75 215 127 HOH HOH . AA 7 HOH B 76 216 128 HOH HOH . AA 7 HOH B 77 217 130 HOH HOH . AA 7 HOH B 78 218 131 HOH HOH . AA 7 HOH B 79 219 132 HOH HOH . AA 7 HOH B 80 220 134 HOH HOH . AA 7 HOH B 81 221 135 HOH HOH . AA 7 HOH B 82 222 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . V 5 23.849 28.73 10.424 1 52.41 ? C1 GOL 137 B 1 HETATM 2 O O1 GOL . . . V 5 24.044 29.931 9.704 1 58.45 ? O1 GOL 137 B 1 HETATM 3 C C2 GOL . . . V 5 22.362 28.498 10.674 1 56.83 ? C2 GOL 137 B 1 HETATM 4 O O2 GOL . . . V 5 22.06 28.74 12.032 1 55.71 ? O2 GOL 137 B 1 HETATM 5 C C3 GOL . . . V 5 22.014 27.06 10.301 1 56.81 ? C3 GOL 137 B 1 HETATM 6 O O3 GOL . . . V 5 20.643 26.802 10.522 1 57.89 ? O3 GOL 137 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #