data_3RVR # _model_server_result.job_id JudbbOIqdOiVZaiH0L11PQ _model_server_result.datetime_utc '2025-03-05 20:56:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":138}' # _entry.id 3RVR # _exptl.entry_id 3RVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RVR _cell.length_a 53.51 _cell.length_b 53.63 _cell.length_c 161.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,W 1 1 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 U N N ? 5 V N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3RVR _atom_sites.fract_transf_matrix[1][1] 0.018688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 130 130 MN MN . D 3 MOO A 1 131 131 MOO MOO . E 4 SO4 A 1 132 132 SO4 SO4 . F 4 SO4 A 1 133 1 SO4 SO4 . G 4 SO4 A 1 134 3 SO4 SO4 . H 4 SO4 A 1 135 5 SO4 SO4 . I 5 GOL A 1 136 1 GOL GOL . J 5 GOL A 1 137 2 GOL GOL . K 5 GOL A 1 138 3 GOL GOL . L 2 MN B 1 130 130 MN MN . M 3 MOO B 1 131 131 MOO MOO . N 4 SO4 B 1 132 132 SO4 SO4 . O 4 SO4 B 1 133 2 SO4 SO4 . P 4 SO4 B 1 134 4 SO4 SO4 . Q 4 SO4 B 1 135 6 SO4 SO4 . R 4 SO4 B 1 136 7 SO4 SO4 . S 4 SO4 B 1 137 8 SO4 SO4 . T 4 SO4 B 1 138 9 SO4 SO4 . U 5 GOL B 1 139 4 GOL GOL . V 5 GOL B 1 140 5 GOL GOL . W 6 HOH A 1 139 139 HOH HOH . W 6 HOH A 2 140 1 HOH HOH . W 6 HOH A 3 141 141 HOH HOH . W 6 HOH A 4 142 3 HOH HOH . W 6 HOH A 5 143 143 HOH HOH . W 6 HOH A 6 144 5 HOH HOH . W 6 HOH A 7 145 8 HOH HOH . W 6 HOH A 8 146 9 HOH HOH . W 6 HOH A 9 147 10 HOH HOH . W 6 HOH A 10 148 12 HOH HOH . W 6 HOH A 11 149 13 HOH HOH . W 6 HOH A 12 150 150 HOH HOH . W 6 HOH A 13 151 16 HOH HOH . W 6 HOH A 14 152 17 HOH HOH . W 6 HOH A 15 153 153 HOH HOH . W 6 HOH A 16 154 154 HOH HOH . W 6 HOH A 17 155 18 HOH HOH . W 6 HOH A 18 156 156 HOH HOH . W 6 HOH A 19 157 19 HOH HOH . W 6 HOH A 20 158 25 HOH HOH . W 6 HOH A 21 159 159 HOH HOH . W 6 HOH A 22 160 160 HOH HOH . W 6 HOH A 23 161 161 HOH HOH . W 6 HOH A 24 162 162 HOH HOH . W 6 HOH A 25 163 28 HOH HOH . W 6 HOH A 26 164 29 HOH HOH . W 6 HOH A 27 165 165 HOH HOH . W 6 HOH A 28 166 166 HOH HOH . W 6 HOH A 29 167 167 HOH HOH . W 6 HOH A 30 168 30 HOH HOH . W 6 HOH A 31 169 169 HOH HOH . W 6 HOH A 32 170 170 HOH HOH . W 6 HOH A 33 171 32 HOH HOH . W 6 HOH A 34 172 33 HOH HOH . W 6 HOH A 35 173 173 HOH HOH . W 6 HOH A 36 174 174 HOH HOH . W 6 HOH A 37 175 34 HOH HOH . W 6 HOH A 38 176 35 HOH HOH . W 6 HOH A 39 177 177 HOH HOH . W 6 HOH A 40 178 40 HOH HOH . W 6 HOH A 41 179 179 HOH HOH . W 6 HOH A 42 180 180 HOH HOH . W 6 HOH A 43 181 181 HOH HOH . W 6 HOH A 44 182 41 HOH HOH . W 6 HOH A 45 183 183 HOH HOH . W 6 HOH A 46 184 184 HOH HOH . W 6 HOH A 47 185 185 HOH HOH . W 6 HOH A 48 186 186 HOH HOH . W 6 HOH A 49 187 45 HOH HOH . W 6 HOH A 50 188 188 HOH HOH . W 6 HOH A 51 189 189 HOH HOH . W 6 HOH A 52 190 190 HOH HOH . W 6 HOH A 53 191 46 HOH HOH . W 6 HOH A 54 192 47 HOH HOH . W 6 HOH A 55 193 49 HOH HOH . W 6 HOH A 56 194 50 HOH HOH . W 6 HOH A 57 195 195 HOH HOH . W 6 HOH A 58 196 51 HOH HOH . W 6 HOH A 59 197 52 HOH HOH . W 6 HOH A 60 198 198 HOH HOH . W 6 HOH A 61 199 54 HOH HOH . W 6 HOH A 62 200 200 HOH HOH . W 6 HOH A 63 201 201 HOH HOH . W 6 HOH A 64 202 55 HOH HOH . W 6 HOH A 65 203 61 HOH HOH . W 6 HOH A 66 204 62 HOH HOH . W 6 HOH A 67 205 63 HOH HOH . W 6 HOH A 68 206 64 HOH HOH . W 6 HOH A 69 207 207 HOH HOH . W 6 HOH A 70 208 68 HOH HOH . W 6 HOH A 71 209 70 HOH HOH . W 6 HOH A 72 210 210 HOH HOH . W 6 HOH A 73 211 211 HOH HOH . W 6 HOH A 74 212 212 HOH HOH . W 6 HOH A 75 213 213 HOH HOH . W 6 HOH A 76 214 214 HOH HOH . W 6 HOH A 77 215 71 HOH HOH . W 6 HOH A 78 216 74 HOH HOH . W 6 HOH A 79 217 75 HOH HOH . W 6 HOH A 80 218 218 HOH HOH . W 6 HOH A 81 219 219 HOH HOH . W 6 HOH A 82 220 76 HOH HOH . W 6 HOH A 83 221 79 HOH HOH . W 6 HOH A 84 222 81 HOH HOH . W 6 HOH A 85 223 87 HOH HOH . W 6 HOH A 86 224 224 HOH HOH . W 6 HOH A 87 225 88 HOH HOH . W 6 HOH A 88 226 89 HOH HOH . W 6 HOH A 89 227 227 HOH HOH . W 6 HOH A 90 228 90 HOH HOH . W 6 HOH A 91 229 91 HOH HOH . W 6 HOH A 92 230 230 HOH HOH . W 6 HOH A 93 231 231 HOH HOH . W 6 HOH A 94 232 92 HOH HOH . W 6 HOH A 95 233 233 HOH HOH . W 6 HOH A 96 234 234 HOH HOH . W 6 HOH A 97 235 235 HOH HOH . W 6 HOH A 98 236 96 HOH HOH . W 6 HOH A 99 237 237 HOH HOH . W 6 HOH A 100 238 98 HOH HOH . W 6 HOH A 101 239 239 HOH HOH . W 6 HOH A 102 240 240 HOH HOH . W 6 HOH A 103 241 99 HOH HOH . W 6 HOH A 104 242 242 HOH HOH . W 6 HOH A 105 243 103 HOH HOH . W 6 HOH A 106 244 104 HOH HOH . W 6 HOH A 107 245 245 HOH HOH . W 6 HOH A 108 246 246 HOH HOH . W 6 HOH A 109 247 247 HOH HOH . W 6 HOH A 110 248 248 HOH HOH . W 6 HOH A 111 249 249 HOH HOH . W 6 HOH A 112 250 250 HOH HOH . W 6 HOH A 113 251 105 HOH HOH . W 6 HOH A 114 252 252 HOH HOH . W 6 HOH A 115 253 253 HOH HOH . W 6 HOH A 116 254 107 HOH HOH . W 6 HOH A 117 255 255 HOH HOH . W 6 HOH A 118 256 108 HOH HOH . W 6 HOH A 119 257 257 HOH HOH . W 6 HOH A 120 258 110 HOH HOH . W 6 HOH A 121 259 259 HOH HOH . W 6 HOH A 122 260 111 HOH HOH . W 6 HOH A 123 261 112 HOH HOH . W 6 HOH A 124 262 262 HOH HOH . W 6 HOH A 125 263 113 HOH HOH . W 6 HOH A 126 264 114 HOH HOH . W 6 HOH A 127 265 120 HOH HOH . W 6 HOH A 128 266 266 HOH HOH . W 6 HOH A 129 267 267 HOH HOH . W 6 HOH A 130 268 268 HOH HOH . W 6 HOH A 131 269 122 HOH HOH . W 6 HOH A 132 270 270 HOH HOH . W 6 HOH A 133 271 271 HOH HOH . W 6 HOH A 134 272 123 HOH HOH . W 6 HOH A 135 273 273 HOH HOH . W 6 HOH A 136 274 274 HOH HOH . W 6 HOH A 137 275 124 HOH HOH . W 6 HOH A 138 276 126 HOH HOH . W 6 HOH A 139 277 277 HOH HOH . W 6 HOH A 140 278 278 HOH HOH . W 6 HOH A 141 279 129 HOH HOH . W 6 HOH A 142 280 131 HOH HOH . W 6 HOH A 143 281 133 HOH HOH . W 6 HOH A 144 282 282 HOH HOH . W 6 HOH A 145 283 283 HOH HOH . W 6 HOH A 146 284 136 HOH HOH . W 6 HOH A 147 285 138 HOH HOH . W 6 HOH A 148 287 287 HOH HOH . X 6 HOH B 1 141 2 HOH HOH . X 6 HOH B 2 142 142 HOH HOH . X 6 HOH B 3 143 4 HOH HOH . X 6 HOH B 4 144 144 HOH HOH . X 6 HOH B 5 145 145 HOH HOH . X 6 HOH B 6 146 146 HOH HOH . X 6 HOH B 7 147 147 HOH HOH . X 6 HOH B 8 148 148 HOH HOH . X 6 HOH B 9 149 149 HOH HOH . X 6 HOH B 10 150 6 HOH HOH . X 6 HOH B 11 151 151 HOH HOH . X 6 HOH B 12 152 152 HOH HOH . X 6 HOH B 13 153 7 HOH HOH . X 6 HOH B 14 154 11 HOH HOH . X 6 HOH B 15 155 155 HOH HOH . X 6 HOH B 16 156 14 HOH HOH . X 6 HOH B 17 157 157 HOH HOH . X 6 HOH B 18 158 158 HOH HOH . X 6 HOH B 19 159 15 HOH HOH . X 6 HOH B 20 160 20 HOH HOH . X 6 HOH B 21 161 21 HOH HOH . X 6 HOH B 22 162 22 HOH HOH . X 6 HOH B 23 163 163 HOH HOH . X 6 HOH B 24 164 164 HOH HOH . X 6 HOH B 25 165 23 HOH HOH . X 6 HOH B 26 166 24 HOH HOH . X 6 HOH B 27 167 26 HOH HOH . X 6 HOH B 28 168 168 HOH HOH . X 6 HOH B 29 169 27 HOH HOH . X 6 HOH B 30 170 31 HOH HOH . X 6 HOH B 31 171 171 HOH HOH . X 6 HOH B 32 172 172 HOH HOH . X 6 HOH B 33 173 36 HOH HOH . X 6 HOH B 34 174 37 HOH HOH . X 6 HOH B 35 175 175 HOH HOH . X 6 HOH B 36 176 176 HOH HOH . X 6 HOH B 37 177 38 HOH HOH . X 6 HOH B 38 178 178 HOH HOH . X 6 HOH B 39 179 39 HOH HOH . X 6 HOH B 40 180 42 HOH HOH . X 6 HOH B 41 181 43 HOH HOH . X 6 HOH B 42 182 182 HOH HOH . X 6 HOH B 43 183 44 HOH HOH . X 6 HOH B 44 184 48 HOH HOH . X 6 HOH B 45 185 53 HOH HOH . X 6 HOH B 46 186 56 HOH HOH . X 6 HOH B 47 187 187 HOH HOH . X 6 HOH B 48 188 57 HOH HOH . X 6 HOH B 49 189 58 HOH HOH . X 6 HOH B 50 190 59 HOH HOH . X 6 HOH B 51 191 191 HOH HOH . X 6 HOH B 52 192 192 HOH HOH . X 6 HOH B 53 193 193 HOH HOH . X 6 HOH B 54 194 194 HOH HOH . X 6 HOH B 55 195 60 HOH HOH . X 6 HOH B 56 196 196 HOH HOH . X 6 HOH B 57 197 197 HOH HOH . X 6 HOH B 58 198 65 HOH HOH . X 6 HOH B 59 199 199 HOH HOH . X 6 HOH B 60 200 66 HOH HOH . X 6 HOH B 61 201 67 HOH HOH . X 6 HOH B 62 202 202 HOH HOH . X 6 HOH B 63 203 203 HOH HOH . X 6 HOH B 64 204 204 HOH HOH . X 6 HOH B 65 205 205 HOH HOH . X 6 HOH B 66 206 206 HOH HOH . X 6 HOH B 67 207 69 HOH HOH . X 6 HOH B 68 208 208 HOH HOH . X 6 HOH B 69 209 209 HOH HOH . X 6 HOH B 70 210 72 HOH HOH . X 6 HOH B 71 211 73 HOH HOH . X 6 HOH B 72 212 77 HOH HOH . X 6 HOH B 73 213 78 HOH HOH . X 6 HOH B 74 214 80 HOH HOH . X 6 HOH B 75 215 215 HOH HOH . X 6 HOH B 76 216 216 HOH HOH . X 6 HOH B 77 217 217 HOH HOH . X 6 HOH B 78 218 82 HOH HOH . X 6 HOH B 79 219 83 HOH HOH . X 6 HOH B 80 220 220 HOH HOH . X 6 HOH B 81 221 221 HOH HOH . X 6 HOH B 82 222 222 HOH HOH . X 6 HOH B 83 223 223 HOH HOH . X 6 HOH B 84 224 84 HOH HOH . X 6 HOH B 85 225 225 HOH HOH . X 6 HOH B 86 226 226 HOH HOH . X 6 HOH B 87 227 85 HOH HOH . X 6 HOH B 88 228 228 HOH HOH . X 6 HOH B 89 229 229 HOH HOH . X 6 HOH B 90 230 86 HOH HOH . X 6 HOH B 91 231 93 HOH HOH . X 6 HOH B 92 232 232 HOH HOH . X 6 HOH B 93 233 94 HOH HOH . X 6 HOH B 94 234 95 HOH HOH . X 6 HOH B 95 235 97 HOH HOH . X 6 HOH B 96 236 236 HOH HOH . X 6 HOH B 97 237 100 HOH HOH . X 6 HOH B 98 238 238 HOH HOH . X 6 HOH B 99 239 101 HOH HOH . X 6 HOH B 100 240 102 HOH HOH . X 6 HOH B 101 241 241 HOH HOH . X 6 HOH B 102 242 106 HOH HOH . X 6 HOH B 103 243 243 HOH HOH . X 6 HOH B 104 244 244 HOH HOH . X 6 HOH B 105 245 109 HOH HOH . X 6 HOH B 106 246 115 HOH HOH . X 6 HOH B 107 247 116 HOH HOH . X 6 HOH B 108 248 117 HOH HOH . X 6 HOH B 109 249 118 HOH HOH . X 6 HOH B 110 250 119 HOH HOH . X 6 HOH B 111 251 251 HOH HOH . X 6 HOH B 112 252 121 HOH HOH . X 6 HOH B 113 253 125 HOH HOH . X 6 HOH B 114 254 254 HOH HOH . X 6 HOH B 115 255 127 HOH HOH . X 6 HOH B 116 256 256 HOH HOH . X 6 HOH B 117 257 128 HOH HOH . X 6 HOH B 118 258 258 HOH HOH . X 6 HOH B 119 259 130 HOH HOH . X 6 HOH B 120 260 260 HOH HOH . X 6 HOH B 121 261 261 HOH HOH . X 6 HOH B 122 262 132 HOH HOH . X 6 HOH B 123 263 263 HOH HOH . X 6 HOH B 124 264 264 HOH HOH . X 6 HOH B 125 265 265 HOH HOH . X 6 HOH B 126 266 134 HOH HOH . X 6 HOH B 127 267 135 HOH HOH . X 6 HOH B 128 268 137 HOH HOH . X 6 HOH B 129 269 269 HOH HOH . X 6 HOH B 130 270 140 HOH HOH . X 6 HOH B 131 272 272 HOH HOH . X 6 HOH B 132 275 275 HOH HOH . X 6 HOH B 133 276 276 HOH HOH . X 6 HOH B 134 279 279 HOH HOH . X 6 HOH B 135 280 280 HOH HOH . X 6 HOH B 136 281 281 HOH HOH . X 6 HOH B 137 284 284 HOH HOH . X 6 HOH B 138 285 285 HOH HOH . X 6 HOH B 139 286 286 HOH HOH . X 6 HOH B 140 288 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 5 -7.228 -24.633 21.591 1 49.08 ? C1 GOL 138 A 1 HETATM 2 O O1 GOL . . . K 5 -6.782 -23.301 21.745 1 36.59 ? O1 GOL 138 A 1 HETATM 3 C C2 GOL . . . K 5 -8.688 -24.779 22.025 1 47.41 ? C2 GOL 138 A 1 HETATM 4 O O2 GOL . . . K 5 -9.354 -25.7 21.178 1 58.69 ? O2 GOL 138 A 1 HETATM 5 C C3 GOL . . . K 5 -9.409 -23.445 21.939 1 32.66 ? C3 GOL 138 A 1 HETATM 6 O O3 GOL . . . K 5 -10.791 -23.722 21.979 1 42.55 ? O3 GOL 138 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #