data_3RXX # _model_server_result.job_id UJK_CwHmOWvHabvR_QwrgQ _model_server_result.datetime_utc '2024-11-22 10:24:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 3RXX # _exptl.entry_id 3RXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.927 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-NITROPHENYLBORONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RXX _cell.length_a 50.348 _cell.length_b 66.558 _cell.length_c 73.598 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 69 1_555 A SG CYS 212 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A OG SER 44 A SER 70 1_555 B B NPB . A NPB 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? # _chem_comp.formula 'C6 H6 B N O4' _chem_comp.formula_weight 166.927 _chem_comp.id NPB _chem_comp.mon_nstd_flag . _chem_comp.name '3-NITROPHENYLBORONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag B OB1 NPB sing 237 n n B OB2 NPB sing 238 n n B CP1 NPB sing 239 n n OB1 HO11 NPB sing 240 n n OB2 HO21 NPB sing 241 n n CP1 CP2 NPB doub 242 n y CP1 CP6 NPB sing 243 n y CP2 CP3 NPB sing 244 n y CP2 HC21 NPB sing 245 n n CP3 NT NPB sing 246 n n CP3 CP4 NPB doub 247 n y NT O1 NPB doub 248 n n NT O2 NPB sing 249 n n CP4 CP5 NPB sing 250 n y CP4 HC41 NPB sing 251 n n CP5 CP6 NPB doub 252 n y CP5 HC51 NPB sing 253 n n CP6 HC61 NPB sing 254 n n # _atom_sites.entry_id 3RXX _atom_sites.fract_transf_matrix[1][1] 0.019862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013587 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPB A 1 600 600 NPB NPB . C 3 HOH A 1 58 58 HOH HOH . C 3 HOH A 2 296 1 HOH HOH . C 3 HOH A 3 297 2 HOH HOH . C 3 HOH A 4 298 3 HOH HOH . C 3 HOH A 5 299 4 HOH HOH . C 3 HOH A 6 300 5 HOH HOH . C 3 HOH A 7 301 6 HOH HOH . C 3 HOH A 8 302 7 HOH HOH . C 3 HOH A 9 303 8 HOH HOH . C 3 HOH A 10 304 9 HOH HOH . C 3 HOH A 11 305 10 HOH HOH . C 3 HOH A 12 306 11 HOH HOH . C 3 HOH A 13 307 12 HOH HOH . C 3 HOH A 14 308 13 HOH HOH . C 3 HOH A 15 309 14 HOH HOH . C 3 HOH A 16 310 15 HOH HOH . C 3 HOH A 17 311 16 HOH HOH . C 3 HOH A 18 312 17 HOH HOH . C 3 HOH A 19 313 18 HOH HOH . C 3 HOH A 20 314 19 HOH HOH . C 3 HOH A 21 315 20 HOH HOH . C 3 HOH A 22 316 21 HOH HOH . C 3 HOH A 23 317 22 HOH HOH . C 3 HOH A 24 318 23 HOH HOH . C 3 HOH A 25 319 24 HOH HOH . C 3 HOH A 26 320 25 HOH HOH . C 3 HOH A 27 321 26 HOH HOH . C 3 HOH A 28 322 27 HOH HOH . C 3 HOH A 29 323 28 HOH HOH . C 3 HOH A 30 324 29 HOH HOH . C 3 HOH A 31 325 30 HOH HOH . C 3 HOH A 32 326 31 HOH HOH . C 3 HOH A 33 327 32 HOH HOH . C 3 HOH A 34 328 33 HOH HOH . C 3 HOH A 35 329 34 HOH HOH . C 3 HOH A 36 330 35 HOH HOH . C 3 HOH A 37 331 36 HOH HOH . C 3 HOH A 38 332 37 HOH HOH . C 3 HOH A 39 333 38 HOH HOH . C 3 HOH A 40 334 39 HOH HOH . C 3 HOH A 41 335 40 HOH HOH . C 3 HOH A 42 336 41 HOH HOH . C 3 HOH A 43 337 42 HOH HOH . C 3 HOH A 44 338 43 HOH HOH . C 3 HOH A 45 339 44 HOH HOH . C 3 HOH A 46 340 45 HOH HOH . C 3 HOH A 47 341 46 HOH HOH . C 3 HOH A 48 342 47 HOH HOH . C 3 HOH A 49 343 48 HOH HOH . C 3 HOH A 50 344 49 HOH HOH . C 3 HOH A 51 345 50 HOH HOH . C 3 HOH A 52 346 51 HOH HOH . C 3 HOH A 53 347 52 HOH HOH . C 3 HOH A 54 348 53 HOH HOH . C 3 HOH A 55 349 54 HOH HOH . C 3 HOH A 56 350 55 HOH HOH . C 3 HOH A 57 351 56 HOH HOH . C 3 HOH A 58 352 57 HOH HOH . C 3 HOH A 59 353 59 HOH HOH . C 3 HOH A 60 354 60 HOH HOH . C 3 HOH A 61 355 61 HOH HOH . C 3 HOH A 62 356 62 HOH HOH . C 3 HOH A 63 357 63 HOH HOH . C 3 HOH A 64 358 64 HOH HOH . C 3 HOH A 65 359 65 HOH HOH . C 3 HOH A 66 360 66 HOH HOH . C 3 HOH A 67 361 67 HOH HOH . C 3 HOH A 68 362 68 HOH HOH . C 3 HOH A 69 363 69 HOH HOH . C 3 HOH A 70 364 70 HOH HOH . C 3 HOH A 71 365 71 HOH HOH . C 3 HOH A 72 366 72 HOH HOH . C 3 HOH A 73 367 73 HOH HOH . C 3 HOH A 74 368 74 HOH HOH . C 3 HOH A 75 369 75 HOH HOH . C 3 HOH A 76 370 76 HOH HOH . C 3 HOH A 77 371 77 HOH HOH . C 3 HOH A 78 372 78 HOH HOH . C 3 HOH A 79 373 79 HOH HOH . C 3 HOH A 80 374 80 HOH HOH . C 3 HOH A 81 375 81 HOH HOH . C 3 HOH A 82 376 82 HOH HOH . C 3 HOH A 83 377 83 HOH HOH . C 3 HOH A 84 378 84 HOH HOH . C 3 HOH A 85 379 85 HOH HOH . C 3 HOH A 86 380 86 HOH HOH . C 3 HOH A 87 381 87 HOH HOH . C 3 HOH A 88 382 88 HOH HOH . C 3 HOH A 89 383 89 HOH HOH . C 3 HOH A 90 384 90 HOH HOH . C 3 HOH A 91 385 91 HOH HOH . C 3 HOH A 92 386 92 HOH HOH . C 3 HOH A 93 387 93 HOH HOH . C 3 HOH A 94 388 94 HOH HOH . C 3 HOH A 95 389 95 HOH HOH . C 3 HOH A 96 390 96 HOH HOH . C 3 HOH A 97 391 97 HOH HOH . C 3 HOH A 98 392 98 HOH HOH . C 3 HOH A 99 393 99 HOH HOH . C 3 HOH A 100 394 100 HOH HOH . C 3 HOH A 101 395 101 HOH HOH . C 3 HOH A 102 396 102 HOH HOH . C 3 HOH A 103 397 103 HOH HOH . C 3 HOH A 104 398 104 HOH HOH . C 3 HOH A 105 399 105 HOH HOH . C 3 HOH A 106 400 106 HOH HOH . C 3 HOH A 107 401 107 HOH HOH . C 3 HOH A 108 402 108 HOH HOH . C 3 HOH A 109 403 109 HOH HOH . C 3 HOH A 110 404 110 HOH HOH . C 3 HOH A 111 405 111 HOH HOH . C 3 HOH A 112 406 112 HOH HOH . C 3 HOH A 113 407 113 HOH HOH . C 3 HOH A 114 408 114 HOH HOH . C 3 HOH A 115 409 115 HOH HOH . C 3 HOH A 116 410 116 HOH HOH . C 3 HOH A 117 411 117 HOH HOH . C 3 HOH A 118 412 118 HOH HOH . C 3 HOH A 119 413 119 HOH HOH . C 3 HOH A 120 414 120 HOH HOH . C 3 HOH A 121 415 121 HOH HOH . C 3 HOH A 122 416 122 HOH HOH . C 3 HOH A 123 417 123 HOH HOH . C 3 HOH A 124 418 124 HOH HOH . C 3 HOH A 125 419 125 HOH HOH . C 3 HOH A 126 420 126 HOH HOH . C 3 HOH A 127 421 127 HOH HOH . C 3 HOH A 128 422 128 HOH HOH . C 3 HOH A 129 423 129 HOH HOH . C 3 HOH A 130 424 130 HOH HOH . C 3 HOH A 131 425 131 HOH HOH . C 3 HOH A 132 426 132 HOH HOH . C 3 HOH A 133 427 133 HOH HOH . C 3 HOH A 134 428 134 HOH HOH . C 3 HOH A 135 429 135 HOH HOH . C 3 HOH A 136 430 136 HOH HOH . C 3 HOH A 137 431 137 HOH HOH . C 3 HOH A 138 432 138 HOH HOH . C 3 HOH A 139 433 139 HOH HOH . C 3 HOH A 140 434 140 HOH HOH . C 3 HOH A 141 435 141 HOH HOH . C 3 HOH A 142 436 142 HOH HOH . C 3 HOH A 143 437 143 HOH HOH . C 3 HOH A 144 438 144 HOH HOH . C 3 HOH A 145 439 145 HOH HOH . C 3 HOH A 146 440 146 HOH HOH . C 3 HOH A 147 441 147 HOH HOH . C 3 HOH A 148 442 148 HOH HOH . C 3 HOH A 149 443 149 HOH HOH . C 3 HOH A 150 444 150 HOH HOH . C 3 HOH A 151 445 151 HOH HOH . C 3 HOH A 152 446 152 HOH HOH . C 3 HOH A 153 447 153 HOH HOH . C 3 HOH A 154 448 154 HOH HOH . C 3 HOH A 155 449 155 HOH HOH . C 3 HOH A 156 450 156 HOH HOH . C 3 HOH A 157 451 157 HOH HOH . C 3 HOH A 158 452 158 HOH HOH . C 3 HOH A 159 453 159 HOH HOH . C 3 HOH A 160 454 160 HOH HOH . C 3 HOH A 161 455 161 HOH HOH . C 3 HOH A 162 456 162 HOH HOH . C 3 HOH A 163 457 163 HOH HOH . C 3 HOH A 164 458 164 HOH HOH . C 3 HOH A 165 459 165 HOH HOH . C 3 HOH A 166 460 166 HOH HOH . C 3 HOH A 167 461 167 HOH HOH . C 3 HOH A 168 462 168 HOH HOH . C 3 HOH A 169 463 169 HOH HOH . C 3 HOH A 170 464 170 HOH HOH . C 3 HOH A 171 465 171 HOH HOH . C 3 HOH A 172 466 172 HOH HOH . C 3 HOH A 173 467 173 HOH HOH . C 3 HOH A 174 468 174 HOH HOH . C 3 HOH A 175 469 175 HOH HOH . C 3 HOH A 176 470 176 HOH HOH . C 3 HOH A 177 471 177 HOH HOH . C 3 HOH A 178 472 178 HOH HOH . C 3 HOH A 179 473 179 HOH HOH . C 3 HOH A 180 474 180 HOH HOH . C 3 HOH A 181 475 181 HOH HOH . C 3 HOH A 182 476 182 HOH HOH . C 3 HOH A 183 477 183 HOH HOH . C 3 HOH A 184 478 184 HOH HOH . C 3 HOH A 185 479 185 HOH HOH . C 3 HOH A 186 480 186 HOH HOH . C 3 HOH A 187 481 187 HOH HOH . C 3 HOH A 188 482 188 HOH HOH . C 3 HOH A 189 483 189 HOH HOH . C 3 HOH A 190 484 190 HOH HOH . C 3 HOH A 191 485 191 HOH HOH . C 3 HOH A 192 486 192 HOH HOH . C 3 HOH A 193 487 193 HOH HOH . C 3 HOH A 194 488 194 HOH HOH . C 3 HOH A 195 489 195 HOH HOH . C 3 HOH A 196 490 196 HOH HOH . C 3 HOH A 197 491 197 HOH HOH . C 3 HOH A 198 492 198 HOH HOH . C 3 HOH A 199 493 199 HOH HOH . C 3 HOH A 200 494 200 HOH HOH . C 3 HOH A 201 495 201 HOH HOH . C 3 HOH A 202 496 202 HOH HOH . C 3 HOH A 203 497 203 HOH HOH . C 3 HOH A 204 498 204 HOH HOH . C 3 HOH A 205 499 205 HOH HOH . C 3 HOH A 206 500 206 HOH HOH . C 3 HOH A 207 501 207 HOH HOH . C 3 HOH A 208 502 208 HOH HOH . C 3 HOH A 209 503 209 HOH HOH . C 3 HOH A 210 504 210 HOH HOH . C 3 HOH A 211 505 211 HOH HOH . C 3 HOH A 212 506 212 HOH HOH . C 3 HOH A 213 507 213 HOH HOH . C 3 HOH A 214 508 214 HOH HOH . C 3 HOH A 215 509 215 HOH HOH . C 3 HOH A 216 510 216 HOH HOH . C 3 HOH A 217 511 217 HOH HOH . C 3 HOH A 218 512 218 HOH HOH . C 3 HOH A 219 513 219 HOH HOH . C 3 HOH A 220 514 220 HOH HOH . C 3 HOH A 221 515 221 HOH HOH . C 3 HOH A 222 516 222 HOH HOH . C 3 HOH A 223 517 223 HOH HOH . C 3 HOH A 224 518 224 HOH HOH . C 3 HOH A 225 519 225 HOH HOH . C 3 HOH A 226 520 226 HOH HOH . C 3 HOH A 227 521 227 HOH HOH . C 3 HOH A 228 522 228 HOH HOH . C 3 HOH A 229 523 229 HOH HOH . C 3 HOH A 230 524 230 HOH HOH . C 3 HOH A 231 525 231 HOH HOH . C 3 HOH A 232 526 232 HOH HOH . C 3 HOH A 233 527 233 HOH HOH . C 3 HOH A 234 528 234 HOH HOH . C 3 HOH A 235 529 235 HOH HOH . C 3 HOH A 236 530 236 HOH HOH . C 3 HOH A 237 531 237 HOH HOH . C 3 HOH A 238 532 238 HOH HOH . C 3 HOH A 239 533 239 HOH HOH . C 3 HOH A 240 534 240 HOH HOH . C 3 HOH A 241 535 241 HOH HOH . C 3 HOH A 242 536 242 HOH HOH . C 3 HOH A 243 537 243 HOH HOH . C 3 HOH A 244 538 244 HOH HOH . C 3 HOH A 245 539 245 HOH HOH . C 3 HOH A 246 540 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B NPB . . . B 2 -7.088 3.349 -4.925 1 17.06 ? B NPB 600 A 1 HETATM 2 O OB1 NPB . . . B 2 -5.94 4.232 -4.483 1 14.86 ? OB1 NPB 600 A 1 HETATM 3 O OB2 NPB . . . B 2 -8.224 3.877 -5.763 1 13.06 ? OB2 NPB 600 A 1 HETATM 4 C CP1 NPB . . . B 2 -7.763 2.574 -3.691 1 13.45 ? CP1 NPB 600 A 1 HETATM 5 C CP2 NPB . . . B 2 -8.385 1.355 -3.942 1 23.15 ? CP2 NPB 600 A 1 HETATM 6 C CP3 NPB . . . B 2 -8.991 0.622 -2.921 1 25.95 ? CP3 NPB 600 A 1 HETATM 7 N NT NPB . . . B 2 -9.654 -0.707 -3.255 1 31.89 ? NT NPB 600 A 1 HETATM 8 O O1 NPB . . . B 2 -10.03 -1.461 -2.364 1 39.43 ? O1 NPB 600 A 1 HETATM 9 O O2 NPB . . . B 2 -9.796 -1.029 -4.418 1 34.49 ? O2 NPB 600 A 1 HETATM 10 C CP4 NPB . . . B 2 -8.977 1.123 -1.617 1 18.93 ? CP4 NPB 600 A 1 HETATM 11 C CP5 NPB . . . B 2 -8.361 2.341 -1.346 1 16.55 ? CP5 NPB 600 A 1 HETATM 12 C CP6 NPB . . . B 2 -7.744 3.066 -2.382 1 21.77 ? CP6 NPB 600 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #