data_3RY4 # _model_server_result.job_id KrFg8AHqzuo2pUbMansRGg _model_server_result.datetime_utc '2024-11-17 10:24:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ry4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 3RY4 # _exptl.entry_id 3RY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RY4 _cell.length_a 79.343 _cell.length_b 100.407 _cell.length_c 27.937 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 29 1_555 A SG CYS 68 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 107 A CYS 110 1_555 A SG CYS 151 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A ND2 ASN 142 A ASN 145 1_555 B C1 NAG . A NAG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3RY4 _atom_sites.fract_transf_matrix[1][1] 0.012604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009959 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.035795 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 200 200 NAG NAG . C 3 GOL A 1 600 600 GOL GOL . D 4 HOH A 1 800 800 HOH HOH . D 4 HOH A 2 801 801 HOH HOH . D 4 HOH A 3 802 802 HOH HOH . D 4 HOH A 4 803 803 HOH HOH . D 4 HOH A 5 804 804 HOH HOH . D 4 HOH A 6 805 805 HOH HOH . D 4 HOH A 7 806 806 HOH HOH . D 4 HOH A 8 807 807 HOH HOH . D 4 HOH A 9 808 808 HOH HOH . D 4 HOH A 10 809 809 HOH HOH . D 4 HOH A 11 810 810 HOH HOH . D 4 HOH A 12 811 811 HOH HOH . D 4 HOH A 13 812 812 HOH HOH . D 4 HOH A 14 813 813 HOH HOH . D 4 HOH A 15 814 814 HOH HOH . D 4 HOH A 16 815 815 HOH HOH . D 4 HOH A 17 816 816 HOH HOH . D 4 HOH A 18 817 817 HOH HOH . D 4 HOH A 19 818 818 HOH HOH . D 4 HOH A 20 819 819 HOH HOH . D 4 HOH A 21 820 820 HOH HOH . D 4 HOH A 22 821 821 HOH HOH . D 4 HOH A 23 822 822 HOH HOH . D 4 HOH A 24 823 823 HOH HOH . D 4 HOH A 25 824 824 HOH HOH . D 4 HOH A 26 825 825 HOH HOH . D 4 HOH A 27 826 826 HOH HOH . D 4 HOH A 28 827 827 HOH HOH . D 4 HOH A 29 828 828 HOH HOH . D 4 HOH A 30 829 829 HOH HOH . D 4 HOH A 31 830 830 HOH HOH . D 4 HOH A 32 831 831 HOH HOH . D 4 HOH A 33 832 832 HOH HOH . D 4 HOH A 34 833 833 HOH HOH . D 4 HOH A 35 834 834 HOH HOH . D 4 HOH A 36 835 835 HOH HOH . D 4 HOH A 37 836 836 HOH HOH . D 4 HOH A 38 837 837 HOH HOH . D 4 HOH A 39 838 838 HOH HOH . D 4 HOH A 40 839 839 HOH HOH . D 4 HOH A 41 840 840 HOH HOH . D 4 HOH A 42 841 841 HOH HOH . D 4 HOH A 43 842 842 HOH HOH . D 4 HOH A 44 843 843 HOH HOH . D 4 HOH A 45 844 844 HOH HOH . D 4 HOH A 46 845 845 HOH HOH . D 4 HOH A 47 846 846 HOH HOH . D 4 HOH A 48 847 847 HOH HOH . D 4 HOH A 49 848 848 HOH HOH . D 4 HOH A 50 849 849 HOH HOH . D 4 HOH A 51 850 850 HOH HOH . D 4 HOH A 52 851 851 HOH HOH . D 4 HOH A 53 852 852 HOH HOH . D 4 HOH A 54 853 853 HOH HOH . D 4 HOH A 55 854 854 HOH HOH . D 4 HOH A 56 855 855 HOH HOH . D 4 HOH A 57 856 856 HOH HOH . D 4 HOH A 58 857 857 HOH HOH . D 4 HOH A 59 858 858 HOH HOH . D 4 HOH A 60 859 859 HOH HOH . D 4 HOH A 61 860 860 HOH HOH . D 4 HOH A 62 861 861 HOH HOH . D 4 HOH A 63 862 862 HOH HOH . D 4 HOH A 64 863 863 HOH HOH . D 4 HOH A 65 864 864 HOH HOH . D 4 HOH A 66 865 865 HOH HOH . D 4 HOH A 67 866 866 HOH HOH . D 4 HOH A 68 867 867 HOH HOH . D 4 HOH A 69 868 868 HOH HOH . D 4 HOH A 70 869 869 HOH HOH . D 4 HOH A 71 870 870 HOH HOH . D 4 HOH A 72 871 871 HOH HOH . D 4 HOH A 73 872 872 HOH HOH . D 4 HOH A 74 873 873 HOH HOH . D 4 HOH A 75 874 874 HOH HOH . D 4 HOH A 76 875 875 HOH HOH . D 4 HOH A 77 876 876 HOH HOH . D 4 HOH A 78 877 877 HOH HOH . D 4 HOH A 79 878 878 HOH HOH . D 4 HOH A 80 879 879 HOH HOH . D 4 HOH A 81 880 880 HOH HOH . D 4 HOH A 82 881 881 HOH HOH . D 4 HOH A 83 882 882 HOH HOH . D 4 HOH A 84 883 883 HOH HOH . D 4 HOH A 85 884 884 HOH HOH . D 4 HOH A 86 885 885 HOH HOH . D 4 HOH A 87 886 886 HOH HOH . D 4 HOH A 88 887 887 HOH HOH . D 4 HOH A 89 888 888 HOH HOH . D 4 HOH A 90 889 889 HOH HOH . D 4 HOH A 91 890 890 HOH HOH . D 4 HOH A 92 891 891 HOH HOH . D 4 HOH A 93 892 892 HOH HOH . D 4 HOH A 94 893 893 HOH HOH . D 4 HOH A 95 894 894 HOH HOH . D 4 HOH A 96 895 895 HOH HOH . D 4 HOH A 97 896 896 HOH HOH . D 4 HOH A 98 897 897 HOH HOH . D 4 HOH A 99 898 898 HOH HOH . D 4 HOH A 100 899 899 HOH HOH . D 4 HOH A 101 900 900 HOH HOH . D 4 HOH A 102 901 901 HOH HOH . D 4 HOH A 103 902 902 HOH HOH . D 4 HOH A 104 903 903 HOH HOH . D 4 HOH A 105 904 904 HOH HOH . D 4 HOH A 106 905 905 HOH HOH . D 4 HOH A 107 906 906 HOH HOH . D 4 HOH A 108 907 907 HOH HOH . D 4 HOH A 109 908 908 HOH HOH . D 4 HOH A 110 909 909 HOH HOH . D 4 HOH A 111 910 910 HOH HOH . D 4 HOH A 112 911 911 HOH HOH . D 4 HOH A 113 912 912 HOH HOH . D 4 HOH A 114 913 913 HOH HOH . D 4 HOH A 115 914 914 HOH HOH . D 4 HOH A 116 915 915 HOH HOH . D 4 HOH A 117 916 916 HOH HOH . D 4 HOH A 118 917 917 HOH HOH . D 4 HOH A 119 918 918 HOH HOH . D 4 HOH A 120 919 919 HOH HOH . D 4 HOH A 121 920 920 HOH HOH . D 4 HOH A 122 921 921 HOH HOH . D 4 HOH A 123 922 922 HOH HOH . D 4 HOH A 124 923 923 HOH HOH . D 4 HOH A 125 924 924 HOH HOH . D 4 HOH A 126 925 925 HOH HOH . D 4 HOH A 127 926 926 HOH HOH . D 4 HOH A 128 927 927 HOH HOH . D 4 HOH A 129 928 928 HOH HOH . D 4 HOH A 130 929 929 HOH HOH . D 4 HOH A 131 930 930 HOH HOH . D 4 HOH A 132 931 931 HOH HOH . D 4 HOH A 133 932 932 HOH HOH . D 4 HOH A 134 933 933 HOH HOH . D 4 HOH A 135 934 934 HOH HOH . D 4 HOH A 136 935 935 HOH HOH . D 4 HOH A 137 936 936 HOH HOH . D 4 HOH A 138 937 937 HOH HOH . D 4 HOH A 139 938 938 HOH HOH . D 4 HOH A 140 939 939 HOH HOH . D 4 HOH A 141 940 940 HOH HOH . D 4 HOH A 142 941 941 HOH HOH . D 4 HOH A 143 942 942 HOH HOH . D 4 HOH A 144 943 943 HOH HOH . D 4 HOH A 145 944 944 HOH HOH . D 4 HOH A 146 945 945 HOH HOH . D 4 HOH A 147 946 946 HOH HOH . D 4 HOH A 148 947 947 HOH HOH . D 4 HOH A 149 948 948 HOH HOH . D 4 HOH A 150 949 949 HOH HOH . D 4 HOH A 151 950 950 HOH HOH . D 4 HOH A 152 951 951 HOH HOH . D 4 HOH A 153 952 952 HOH HOH . D 4 HOH A 154 953 953 HOH HOH . D 4 HOH A 155 954 954 HOH HOH . D 4 HOH A 156 955 955 HOH HOH . D 4 HOH A 157 956 956 HOH HOH . D 4 HOH A 158 957 957 HOH HOH . D 4 HOH A 159 958 958 HOH HOH . D 4 HOH A 160 959 959 HOH HOH . D 4 HOH A 161 960 960 HOH HOH . D 4 HOH A 162 961 961 HOH HOH . D 4 HOH A 163 962 962 HOH HOH . D 4 HOH A 164 963 963 HOH HOH . D 4 HOH A 165 964 964 HOH HOH . D 4 HOH A 166 965 965 HOH HOH . D 4 HOH A 167 966 966 HOH HOH . D 4 HOH A 168 967 967 HOH HOH . D 4 HOH A 169 968 968 HOH HOH . D 4 HOH A 170 969 969 HOH HOH . D 4 HOH A 171 970 970 HOH HOH . D 4 HOH A 172 971 971 HOH HOH . D 4 HOH A 173 972 972 HOH HOH . D 4 HOH A 174 973 973 HOH HOH . D 4 HOH A 175 974 974 HOH HOH . D 4 HOH A 176 975 975 HOH HOH . D 4 HOH A 177 976 976 HOH HOH . D 4 HOH A 178 977 977 HOH HOH . D 4 HOH A 179 978 978 HOH HOH . D 4 HOH A 180 979 979 HOH HOH . D 4 HOH A 181 980 980 HOH HOH . D 4 HOH A 182 981 981 HOH HOH . D 4 HOH A 183 982 982 HOH HOH . D 4 HOH A 184 983 983 HOH HOH . D 4 HOH A 185 984 984 HOH HOH . D 4 HOH A 186 985 985 HOH HOH . D 4 HOH A 187 986 986 HOH HOH . D 4 HOH A 188 987 987 HOH HOH . D 4 HOH A 189 988 988 HOH HOH . D 4 HOH A 190 989 989 HOH HOH . D 4 HOH A 191 990 990 HOH HOH . D 4 HOH A 192 991 991 HOH HOH . D 4 HOH A 193 992 992 HOH HOH . D 4 HOH A 194 993 993 HOH HOH . D 4 HOH A 195 994 994 HOH HOH . D 4 HOH A 196 995 995 HOH HOH . D 4 HOH A 197 996 996 HOH HOH . D 4 HOH A 198 997 997 HOH HOH . D 4 HOH A 199 998 998 HOH HOH . D 4 HOH A 200 999 999 HOH HOH . D 4 HOH A 201 1000 1000 HOH HOH . D 4 HOH A 202 1001 1001 HOH HOH . D 4 HOH A 203 1002 1002 HOH HOH . D 4 HOH A 204 1003 1003 HOH HOH . D 4 HOH A 205 1004 1004 HOH HOH . D 4 HOH A 206 1005 1005 HOH HOH . D 4 HOH A 207 1006 1006 HOH HOH . D 4 HOH A 208 1007 1007 HOH HOH . D 4 HOH A 209 1008 1008 HOH HOH . D 4 HOH A 210 1009 1009 HOH HOH . D 4 HOH A 211 1010 1010 HOH HOH . D 4 HOH A 212 1011 1011 HOH HOH . D 4 HOH A 213 1012 1012 HOH HOH . D 4 HOH A 214 1013 1013 HOH HOH . D 4 HOH A 215 1014 1014 HOH HOH . D 4 HOH A 216 1015 1015 HOH HOH . D 4 HOH A 217 1016 1016 HOH HOH . D 4 HOH A 218 1017 1017 HOH HOH . D 4 HOH A 219 1018 1018 HOH HOH . D 4 HOH A 220 1019 1019 HOH HOH . D 4 HOH A 221 1020 1020 HOH HOH . D 4 HOH A 222 1021 1021 HOH HOH . D 4 HOH A 223 1022 1022 HOH HOH . D 4 HOH A 224 1023 1023 HOH HOH . D 4 HOH A 225 1024 1024 HOH HOH . D 4 HOH A 226 1025 1025 HOH HOH . D 4 HOH A 227 1026 1026 HOH HOH . D 4 HOH A 228 1027 1027 HOH HOH . D 4 HOH A 229 1028 1028 HOH HOH . D 4 HOH A 230 1029 1029 HOH HOH . D 4 HOH A 231 1030 1030 HOH HOH . D 4 HOH A 232 1031 1031 HOH HOH . D 4 HOH A 233 1032 1032 HOH HOH . D 4 HOH A 234 1033 1033 HOH HOH . D 4 HOH A 235 1034 1034 HOH HOH . D 4 HOH A 236 1035 1035 HOH HOH . D 4 HOH A 237 1036 1036 HOH HOH . D 4 HOH A 238 1037 1037 HOH HOH . D 4 HOH A 239 1038 1038 HOH HOH . D 4 HOH A 240 1039 1039 HOH HOH . D 4 HOH A 241 1040 1040 HOH HOH . D 4 HOH A 242 1041 1041 HOH HOH . D 4 HOH A 243 1042 1042 HOH HOH . D 4 HOH A 244 1043 1043 HOH HOH . D 4 HOH A 245 1044 1044 HOH HOH . D 4 HOH A 246 1045 1045 HOH HOH . D 4 HOH A 247 1046 1046 HOH HOH . D 4 HOH A 248 1047 1047 HOH HOH . D 4 HOH A 249 1048 1048 HOH HOH . D 4 HOH A 250 1049 1049 HOH HOH . D 4 HOH A 251 1050 1050 HOH HOH . D 4 HOH A 252 1051 1051 HOH HOH . D 4 HOH A 253 1052 1052 HOH HOH . D 4 HOH A 254 1053 1053 HOH HOH . D 4 HOH A 255 1054 1054 HOH HOH . D 4 HOH A 256 1055 1055 HOH HOH . D 4 HOH A 257 1056 1056 HOH HOH . D 4 HOH A 258 1057 1057 HOH HOH . D 4 HOH A 259 1058 1058 HOH HOH . D 4 HOH A 260 1059 1059 HOH HOH . D 4 HOH A 261 1060 1060 HOH HOH . D 4 HOH A 262 1061 1061 HOH HOH . D 4 HOH A 263 1062 1062 HOH HOH . D 4 HOH A 264 1063 1063 HOH HOH . D 4 HOH A 265 1064 1064 HOH HOH . D 4 HOH A 266 1065 1065 HOH HOH . D 4 HOH A 267 1066 1066 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 12.624 68.538 25.419 1 21.92 ? C1 GOL 600 A 1 HETATM 2 O O1 GOL . . . C 3 12.014 67.411 26.38 1 21.36 ? O1 GOL 600 A 1 HETATM 3 C C2 GOL . . . C 3 12.941 68.26 24.086 1 22.66 ? C2 GOL 600 A 1 HETATM 4 O O2 GOL . . . C 3 13.272 66.987 23.85 1 17.68 ? O2 GOL 600 A 1 HETATM 5 C C3 GOL . . . C 3 12.841 69.277 23.442 1 25.85 ? C3 GOL 600 A 1 HETATM 6 O O3 GOL . . . C 3 12.478 70.781 23.58 1 18.34 ? O3 GOL 600 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #