data_3RY9 # _model_server_result.job_id 6LXiZIAqwDB3zQyty_61JA _model_server_result.datetime_utc '2024-11-24 22:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ry9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":248}' # _entry.id 3RY9 # _exptl.entry_id 3RY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.82 _cell.angle_gamma 90 _cell.entry_id 3RY9 _cell.length_a 139.421 _cell.length_b 49.144 _cell.length_c 100.369 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E NA NA . B NA 248 1_555 I O HOH . B HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc2 E NA NA . B NA 248 1_555 I O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 E NA NA . B NA 248 1_555 I O HOH . B HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc4 E NA NA . B NA 248 1_555 I O HOH . B HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 E NA NA . B NA 248 1_555 I O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 3RY9 _atom_sites.fract_transf_matrix[1][1] 0.007173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002032 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 248 248 GOL GOL . D 3 1CA A 1 249 249 1CA 1CA . E 4 NA B 1 248 248 NA NA . F 2 GOL B 1 249 249 GOL GOL . G 3 1CA B 1 250 250 1CA 1CA . H 5 HOH A 1 250 250 HOH HOH . H 5 HOH A 2 251 251 HOH HOH . H 5 HOH A 3 252 252 HOH HOH . H 5 HOH A 4 253 253 HOH HOH . H 5 HOH A 5 254 254 HOH HOH . H 5 HOH A 6 255 255 HOH HOH . H 5 HOH A 7 256 256 HOH HOH . H 5 HOH A 8 257 257 HOH HOH . H 5 HOH A 9 258 258 HOH HOH . H 5 HOH A 10 259 259 HOH HOH . H 5 HOH A 11 260 260 HOH HOH . H 5 HOH A 12 261 261 HOH HOH . H 5 HOH A 13 262 262 HOH HOH . H 5 HOH A 14 263 263 HOH HOH . H 5 HOH A 15 264 264 HOH HOH . H 5 HOH A 16 265 265 HOH HOH . H 5 HOH A 17 266 266 HOH HOH . H 5 HOH A 18 267 267 HOH HOH . H 5 HOH A 19 268 268 HOH HOH . H 5 HOH A 20 269 269 HOH HOH . H 5 HOH A 21 270 270 HOH HOH . H 5 HOH A 22 271 271 HOH HOH . H 5 HOH A 23 272 272 HOH HOH . H 5 HOH A 24 273 273 HOH HOH . H 5 HOH A 25 274 274 HOH HOH . H 5 HOH A 26 275 275 HOH HOH . H 5 HOH A 27 276 276 HOH HOH . H 5 HOH A 28 277 277 HOH HOH . H 5 HOH A 29 278 278 HOH HOH . H 5 HOH A 30 279 279 HOH HOH . H 5 HOH A 31 280 280 HOH HOH . H 5 HOH A 32 281 281 HOH HOH . H 5 HOH A 33 282 282 HOH HOH . H 5 HOH A 34 283 283 HOH HOH . H 5 HOH A 35 284 284 HOH HOH . H 5 HOH A 36 285 285 HOH HOH . H 5 HOH A 37 286 286 HOH HOH . H 5 HOH A 38 287 287 HOH HOH . H 5 HOH A 39 288 288 HOH HOH . H 5 HOH A 40 289 289 HOH HOH . H 5 HOH A 41 290 290 HOH HOH . H 5 HOH A 42 291 291 HOH HOH . H 5 HOH A 43 292 292 HOH HOH . H 5 HOH A 44 293 293 HOH HOH . H 5 HOH A 45 294 294 HOH HOH . H 5 HOH A 46 295 295 HOH HOH . H 5 HOH A 47 296 296 HOH HOH . H 5 HOH A 48 297 297 HOH HOH . H 5 HOH A 49 298 298 HOH HOH . H 5 HOH A 50 299 299 HOH HOH . H 5 HOH A 51 300 300 HOH HOH . H 5 HOH A 52 301 301 HOH HOH . H 5 HOH A 53 302 302 HOH HOH . H 5 HOH A 54 303 303 HOH HOH . H 5 HOH A 55 304 304 HOH HOH . H 5 HOH A 56 305 305 HOH HOH . H 5 HOH A 57 306 306 HOH HOH . H 5 HOH A 58 307 307 HOH HOH . H 5 HOH A 59 308 308 HOH HOH . H 5 HOH A 60 309 309 HOH HOH . H 5 HOH A 61 310 310 HOH HOH . H 5 HOH A 62 311 311 HOH HOH . H 5 HOH A 63 312 312 HOH HOH . H 5 HOH A 64 313 313 HOH HOH . H 5 HOH A 65 314 314 HOH HOH . H 5 HOH A 66 315 315 HOH HOH . H 5 HOH A 67 316 316 HOH HOH . H 5 HOH A 68 317 317 HOH HOH . H 5 HOH A 69 318 318 HOH HOH . H 5 HOH A 70 319 319 HOH HOH . H 5 HOH A 71 320 320 HOH HOH . H 5 HOH A 72 321 321 HOH HOH . H 5 HOH A 73 322 322 HOH HOH . H 5 HOH A 74 323 323 HOH HOH . H 5 HOH A 75 324 324 HOH HOH . H 5 HOH A 76 325 325 HOH HOH . H 5 HOH A 77 326 326 HOH HOH . H 5 HOH A 78 327 327 HOH HOH . H 5 HOH A 79 328 328 HOH HOH . H 5 HOH A 80 329 329 HOH HOH . H 5 HOH A 81 330 330 HOH HOH . H 5 HOH A 82 331 331 HOH HOH . H 5 HOH A 83 332 332 HOH HOH . H 5 HOH A 84 333 333 HOH HOH . H 5 HOH A 85 334 334 HOH HOH . H 5 HOH A 86 335 335 HOH HOH . H 5 HOH A 87 336 336 HOH HOH . H 5 HOH A 88 337 337 HOH HOH . H 5 HOH A 89 338 338 HOH HOH . H 5 HOH A 90 339 339 HOH HOH . H 5 HOH A 91 340 340 HOH HOH . H 5 HOH A 92 341 341 HOH HOH . H 5 HOH A 93 342 342 HOH HOH . H 5 HOH A 94 343 343 HOH HOH . H 5 HOH A 95 344 344 HOH HOH . H 5 HOH A 96 345 345 HOH HOH . H 5 HOH A 97 346 346 HOH HOH . I 5 HOH B 1 251 251 HOH HOH . I 5 HOH B 2 252 252 HOH HOH . I 5 HOH B 3 253 253 HOH HOH . I 5 HOH B 4 254 254 HOH HOH . I 5 HOH B 5 255 255 HOH HOH . I 5 HOH B 6 256 256 HOH HOH . I 5 HOH B 7 257 257 HOH HOH . I 5 HOH B 8 258 258 HOH HOH . I 5 HOH B 9 259 259 HOH HOH . I 5 HOH B 10 260 260 HOH HOH . I 5 HOH B 11 261 261 HOH HOH . I 5 HOH B 12 262 262 HOH HOH . I 5 HOH B 13 263 263 HOH HOH . I 5 HOH B 14 264 264 HOH HOH . I 5 HOH B 15 265 265 HOH HOH . I 5 HOH B 16 266 266 HOH HOH . I 5 HOH B 17 267 267 HOH HOH . I 5 HOH B 18 268 268 HOH HOH . I 5 HOH B 19 269 269 HOH HOH . I 5 HOH B 20 270 270 HOH HOH . I 5 HOH B 21 271 271 HOH HOH . I 5 HOH B 22 272 272 HOH HOH . I 5 HOH B 23 273 273 HOH HOH . I 5 HOH B 24 274 274 HOH HOH . I 5 HOH B 25 275 275 HOH HOH . I 5 HOH B 26 276 276 HOH HOH . I 5 HOH B 27 277 277 HOH HOH . I 5 HOH B 28 278 278 HOH HOH . I 5 HOH B 29 279 279 HOH HOH . I 5 HOH B 30 280 280 HOH HOH . I 5 HOH B 31 281 281 HOH HOH . I 5 HOH B 32 282 282 HOH HOH . I 5 HOH B 33 283 283 HOH HOH . I 5 HOH B 34 284 284 HOH HOH . I 5 HOH B 35 285 285 HOH HOH . I 5 HOH B 36 286 286 HOH HOH . I 5 HOH B 37 287 287 HOH HOH . I 5 HOH B 38 288 288 HOH HOH . I 5 HOH B 39 289 289 HOH HOH . I 5 HOH B 40 290 290 HOH HOH . I 5 HOH B 41 291 291 HOH HOH . I 5 HOH B 42 292 292 HOH HOH . I 5 HOH B 43 293 293 HOH HOH . I 5 HOH B 44 294 294 HOH HOH . I 5 HOH B 45 295 295 HOH HOH . I 5 HOH B 46 296 296 HOH HOH . I 5 HOH B 47 297 297 HOH HOH . I 5 HOH B 48 298 298 HOH HOH . I 5 HOH B 49 299 299 HOH HOH . I 5 HOH B 50 300 300 HOH HOH . I 5 HOH B 51 301 301 HOH HOH . I 5 HOH B 52 302 302 HOH HOH . I 5 HOH B 53 303 303 HOH HOH . I 5 HOH B 54 304 304 HOH HOH . I 5 HOH B 55 305 305 HOH HOH . I 5 HOH B 56 306 306 HOH HOH . I 5 HOH B 57 307 307 HOH HOH . I 5 HOH B 58 308 308 HOH HOH . I 5 HOH B 59 309 309 HOH HOH . I 5 HOH B 60 310 310 HOH HOH . I 5 HOH B 61 311 311 HOH HOH . I 5 HOH B 62 312 312 HOH HOH . I 5 HOH B 63 313 313 HOH HOH . I 5 HOH B 64 314 314 HOH HOH . I 5 HOH B 65 315 315 HOH HOH . I 5 HOH B 66 316 316 HOH HOH . I 5 HOH B 67 317 317 HOH HOH . I 5 HOH B 68 318 318 HOH HOH . I 5 HOH B 69 319 319 HOH HOH . I 5 HOH B 70 320 320 HOH HOH . I 5 HOH B 71 321 321 HOH HOH . I 5 HOH B 72 322 322 HOH HOH . I 5 HOH B 73 323 323 HOH HOH . I 5 HOH B 74 324 324 HOH HOH . I 5 HOH B 75 325 325 HOH HOH . I 5 HOH B 76 326 326 HOH HOH . I 5 HOH B 77 327 327 HOH HOH . I 5 HOH B 78 328 328 HOH HOH . I 5 HOH B 79 329 329 HOH HOH . I 5 HOH B 80 330 330 HOH HOH . I 5 HOH B 81 331 331 HOH HOH . I 5 HOH B 82 332 332 HOH HOH . I 5 HOH B 83 333 333 HOH HOH . I 5 HOH B 84 334 334 HOH HOH . I 5 HOH B 85 335 335 HOH HOH . I 5 HOH B 86 336 336 HOH HOH . I 5 HOH B 87 337 337 HOH HOH . I 5 HOH B 88 338 338 HOH HOH . I 5 HOH B 89 339 339 HOH HOH . I 5 HOH B 90 340 340 HOH HOH . I 5 HOH B 91 341 341 HOH HOH . I 5 HOH B 92 342 342 HOH HOH . I 5 HOH B 93 343 343 HOH HOH . I 5 HOH B 94 344 344 HOH HOH . I 5 HOH B 95 345 345 HOH HOH . I 5 HOH B 96 346 346 HOH HOH . I 5 HOH B 97 347 347 HOH HOH . I 5 HOH B 98 348 348 HOH HOH . I 5 HOH B 99 349 349 HOH HOH . I 5 HOH B 100 350 350 HOH HOH . I 5 HOH B 101 351 351 HOH HOH . I 5 HOH B 102 352 352 HOH HOH . I 5 HOH B 103 353 353 HOH HOH . I 5 HOH B 104 354 354 HOH HOH . I 5 HOH B 105 355 355 HOH HOH . I 5 HOH B 106 356 356 HOH HOH . I 5 HOH B 107 357 357 HOH HOH . I 5 HOH B 108 358 358 HOH HOH . I 5 HOH B 109 359 359 HOH HOH . I 5 HOH B 110 360 360 HOH HOH . I 5 HOH B 111 361 361 HOH HOH . I 5 HOH B 112 362 362 HOH HOH . I 5 HOH B 113 363 363 HOH HOH . I 5 HOH B 114 364 364 HOH HOH . I 5 HOH B 115 365 365 HOH HOH . I 5 HOH B 116 366 366 HOH HOH . I 5 HOH B 117 367 367 HOH HOH . I 5 HOH B 118 368 368 HOH HOH . I 5 HOH B 119 369 369 HOH HOH . I 5 HOH B 120 370 370 HOH HOH . I 5 HOH B 121 371 371 HOH HOH . I 5 HOH B 122 372 372 HOH HOH . I 5 HOH B 123 373 373 HOH HOH . I 5 HOH B 124 374 374 HOH HOH . I 5 HOH B 125 375 375 HOH HOH . I 5 HOH B 126 376 376 HOH HOH . I 5 HOH B 127 377 377 HOH HOH . I 5 HOH B 128 378 378 HOH HOH . I 5 HOH B 129 379 379 HOH HOH . I 5 HOH B 130 380 380 HOH HOH . I 5 HOH B 131 381 381 HOH HOH . I 5 HOH B 132 382 382 HOH HOH . I 5 HOH B 133 383 383 HOH HOH . I 5 HOH B 134 384 384 HOH HOH . I 5 HOH B 135 385 385 HOH HOH . I 5 HOH B 136 386 386 HOH HOH . I 5 HOH B 137 387 387 HOH HOH . I 5 HOH B 138 388 388 HOH HOH . I 5 HOH B 139 389 389 HOH HOH . I 5 HOH B 140 390 390 HOH HOH . I 5 HOH B 141 391 391 HOH HOH . I 5 HOH B 142 392 392 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 9.644 27.876 17.248 1 40.95 ? C1 GOL 248 A 1 HETATM 2 O O1 GOL . . . C 2 10.425 28.693 18.091 1 40.54 ? O1 GOL 248 A 1 HETATM 3 C C2 GOL . . . C 2 8.389 28.633 16.833 1 41.41 ? C2 GOL 248 A 1 HETATM 4 O O2 GOL . . . C 2 8.767 29.877 16.284 1 41.98 ? O2 GOL 248 A 1 HETATM 5 C C3 GOL . . . C 2 7.574 27.803 15.839 1 41.54 ? C3 GOL 248 A 1 HETATM 6 O O3 GOL . . . C 2 6.493 27.168 16.504 1 41.21 ? O3 GOL 248 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 403 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #