data_3RYK
#
_model_server_result.job_id            gqdW8IUrjiamgfKfCKqJjQ 
_model_server_result.datetime_utc      '2025-02-05 13:03:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ryk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":182}' 
#
_entry.id    3RYK 
#
_exptl.entry_id    3RYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RYK 
_cell.length_a            86.652 
_cell.length_b            86.652 
_cell.length_c            45.101 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 260 n n 
P1 O2 POP sing 261 n n 
P1 O3 POP sing 262 n n 
P1 O POP sing 263 n n 
O2 HO2 POP sing 264 n n 
O P2 POP sing 265 n n 
P2 O4 POP doub 266 n n 
P2 O5 POP sing 267 n n 
P2 O6 POP sing 268 n n 
O5 HO5 POP sing 269 n n 
#
_atom_sites.entry_id                     3RYK 
_atom_sites.fract_transf_matrix[1][1]    0.01154 
_atom_sites.fract_transf_matrix[1][2]    0.006663 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013326 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022172 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 POP A 1 182 1 POP POP . 
D 3 TYD B 1 182 2 TYD TYD . 
E 4 HOH A 1 184 184 HOH HOH . 
E 4 HOH A 2 185 3 HOH HOH . 
E 4 HOH A 3 186 5 HOH HOH . 
E 4 HOH A 4 187 9 HOH HOH . 
E 4 HOH A 5 188 10 HOH HOH . 
E 4 HOH A 6 189 11 HOH HOH . 
E 4 HOH A 7 190 14 HOH HOH . 
E 4 HOH A 8 191 15 HOH HOH . 
E 4 HOH A 9 192 17 HOH HOH . 
E 4 HOH A 10 193 18 HOH HOH . 
E 4 HOH A 11 194 21 HOH HOH . 
E 4 HOH A 12 195 195 HOH HOH . 
E 4 HOH A 13 196 23 HOH HOH . 
E 4 HOH A 14 197 197 HOH HOH . 
E 4 HOH A 15 198 198 HOH HOH . 
E 4 HOH A 16 199 199 HOH HOH . 
E 4 HOH A 17 200 200 HOH HOH . 
E 4 HOH A 18 201 201 HOH HOH . 
E 4 HOH A 19 202 202 HOH HOH . 
E 4 HOH A 20 203 203 HOH HOH . 
E 4 HOH A 21 204 204 HOH HOH . 
E 4 HOH A 22 205 25 HOH HOH . 
E 4 HOH A 23 206 26 HOH HOH . 
E 4 HOH A 24 207 207 HOH HOH . 
E 4 HOH A 25 208 208 HOH HOH . 
E 4 HOH A 26 209 209 HOH HOH . 
E 4 HOH A 27 210 210 HOH HOH . 
E 4 HOH A 28 211 211 HOH HOH . 
E 4 HOH A 29 212 212 HOH HOH . 
E 4 HOH A 30 213 34 HOH HOH . 
E 4 HOH A 31 214 36 HOH HOH . 
E 4 HOH A 32 215 215 HOH HOH . 
E 4 HOH A 33 216 216 HOH HOH . 
E 4 HOH A 34 217 217 HOH HOH . 
E 4 HOH A 35 218 37 HOH HOH . 
E 4 HOH A 36 219 219 HOH HOH . 
E 4 HOH A 37 220 220 HOH HOH . 
E 4 HOH A 38 221 221 HOH HOH . 
E 4 HOH A 39 222 38 HOH HOH . 
E 4 HOH A 40 223 39 HOH HOH . 
E 4 HOH A 41 224 40 HOH HOH . 
E 4 HOH A 42 225 225 HOH HOH . 
E 4 HOH A 43 226 226 HOH HOH . 
E 4 HOH A 44 227 227 HOH HOH . 
E 4 HOH A 45 228 228 HOH HOH . 
E 4 HOH A 46 229 229 HOH HOH . 
E 4 HOH A 47 230 42 HOH HOH . 
E 4 HOH A 48 231 231 HOH HOH . 
E 4 HOH A 49 232 232 HOH HOH . 
E 4 HOH A 50 233 233 HOH HOH . 
E 4 HOH A 51 234 234 HOH HOH . 
E 4 HOH A 52 235 43 HOH HOH . 
E 4 HOH A 53 236 46 HOH HOH . 
E 4 HOH A 54 237 47 HOH HOH . 
E 4 HOH A 55 238 48 HOH HOH . 
E 4 HOH A 56 239 49 HOH HOH . 
E 4 HOH A 57 240 240 HOH HOH . 
E 4 HOH A 58 241 241 HOH HOH . 
E 4 HOH A 59 242 242 HOH HOH . 
E 4 HOH A 60 243 243 HOH HOH . 
E 4 HOH A 61 244 244 HOH HOH . 
E 4 HOH A 62 245 53 HOH HOH . 
E 4 HOH A 63 246 54 HOH HOH . 
E 4 HOH A 64 247 56 HOH HOH . 
E 4 HOH A 65 248 248 HOH HOH . 
E 4 HOH A 66 249 249 HOH HOH . 
E 4 HOH A 67 250 250 HOH HOH . 
E 4 HOH A 68 251 251 HOH HOH . 
E 4 HOH A 69 252 252 HOH HOH . 
E 4 HOH A 70 253 253 HOH HOH . 
E 4 HOH A 71 254 254 HOH HOH . 
E 4 HOH A 72 255 255 HOH HOH . 
E 4 HOH A 73 256 57 HOH HOH . 
E 4 HOH A 74 257 58 HOH HOH . 
E 4 HOH A 75 258 258 HOH HOH . 
E 4 HOH A 76 259 59 HOH HOH . 
E 4 HOH A 77 260 61 HOH HOH . 
E 4 HOH A 78 261 62 HOH HOH . 
E 4 HOH A 79 262 63 HOH HOH . 
E 4 HOH A 80 263 65 HOH HOH . 
E 4 HOH A 81 264 66 HOH HOH . 
E 4 HOH A 82 265 70 HOH HOH . 
E 4 HOH A 83 266 266 HOH HOH . 
E 4 HOH A 84 267 72 HOH HOH . 
E 4 HOH A 85 268 73 HOH HOH . 
E 4 HOH A 86 269 78 HOH HOH . 
E 4 HOH A 87 270 79 HOH HOH . 
E 4 HOH A 88 271 80 HOH HOH . 
E 4 HOH A 89 272 81 HOH HOH . 
E 4 HOH A 90 273 83 HOH HOH . 
E 4 HOH A 91 274 86 HOH HOH . 
E 4 HOH A 92 275 87 HOH HOH . 
E 4 HOH A 93 276 88 HOH HOH . 
E 4 HOH A 94 277 89 HOH HOH . 
E 4 HOH A 95 278 90 HOH HOH . 
E 4 HOH A 96 279 96 HOH HOH . 
E 4 HOH A 97 280 98 HOH HOH . 
E 4 HOH A 98 281 99 HOH HOH . 
E 4 HOH A 99 282 100 HOH HOH . 
E 4 HOH A 100 283 101 HOH HOH . 
E 4 HOH A 101 284 102 HOH HOH . 
E 4 HOH A 102 285 103 HOH HOH . 
E 4 HOH A 103 286 104 HOH HOH . 
E 4 HOH A 104 287 105 HOH HOH . 
E 4 HOH A 105 288 106 HOH HOH . 
E 4 HOH A 106 289 107 HOH HOH . 
E 4 HOH A 107 290 108 HOH HOH . 
E 4 HOH A 108 291 109 HOH HOH . 
E 4 HOH A 109 292 111 HOH HOH . 
E 4 HOH A 110 293 115 HOH HOH . 
E 4 HOH A 111 294 116 HOH HOH . 
E 4 HOH A 112 295 117 HOH HOH . 
E 4 HOH A 113 296 118 HOH HOH . 
E 4 HOH A 114 297 119 HOH HOH . 
E 4 HOH A 115 298 120 HOH HOH . 
E 4 HOH A 116 299 121 HOH HOH . 
E 4 HOH A 117 300 122 HOH HOH . 
E 4 HOH A 118 301 123 HOH HOH . 
E 4 HOH A 119 302 124 HOH HOH . 
E 4 HOH A 120 303 125 HOH HOH . 
E 4 HOH A 121 304 126 HOH HOH . 
E 4 HOH A 122 305 127 HOH HOH . 
E 4 HOH A 123 306 147 HOH HOH . 
E 4 HOH A 124 307 149 HOH HOH . 
E 4 HOH A 125 308 164 HOH HOH . 
E 4 HOH A 126 309 167 HOH HOH . 
E 4 HOH A 127 310 170 HOH HOH . 
E 4 HOH A 128 311 171 HOH HOH . 
E 4 HOH A 129 312 172 HOH HOH . 
E 4 HOH A 130 313 173 HOH HOH . 
E 4 HOH A 131 314 176 HOH HOH . 
E 4 HOH A 132 315 178 HOH HOH . 
E 4 HOH A 133 316 179 HOH HOH . 
E 4 HOH A 134 317 181 HOH HOH . 
E 4 HOH A 135 318 182 HOH HOH . 
E 4 HOH A 136 319 183 HOH HOH . 
F 4 HOH B 1 183 4 HOH HOH . 
F 4 HOH B 2 184 6 HOH HOH . 
F 4 HOH B 3 185 7 HOH HOH . 
F 4 HOH B 4 186 185 HOH HOH . 
F 4 HOH B 5 187 186 HOH HOH . 
F 4 HOH B 6 188 187 HOH HOH . 
F 4 HOH B 7 189 188 HOH HOH . 
F 4 HOH B 8 190 189 HOH HOH . 
F 4 HOH B 9 191 190 HOH HOH . 
F 4 HOH B 10 192 191 HOH HOH . 
F 4 HOH B 11 193 192 HOH HOH . 
F 4 HOH B 12 194 193 HOH HOH . 
F 4 HOH B 13 195 194 HOH HOH . 
F 4 HOH B 14 196 8 HOH HOH . 
F 4 HOH B 15 197 196 HOH HOH . 
F 4 HOH B 16 198 12 HOH HOH . 
F 4 HOH B 17 199 13 HOH HOH . 
F 4 HOH B 18 200 16 HOH HOH . 
F 4 HOH B 19 201 19 HOH HOH . 
F 4 HOH B 20 202 20 HOH HOH . 
F 4 HOH B 21 203 22 HOH HOH . 
F 4 HOH B 22 204 24 HOH HOH . 
F 4 HOH B 23 205 27 HOH HOH . 
F 4 HOH B 24 206 205 HOH HOH . 
F 4 HOH B 25 207 206 HOH HOH . 
F 4 HOH B 26 208 28 HOH HOH . 
F 4 HOH B 27 209 29 HOH HOH . 
F 4 HOH B 28 210 30 HOH HOH . 
F 4 HOH B 29 211 31 HOH HOH . 
F 4 HOH B 30 212 32 HOH HOH . 
F 4 HOH B 31 213 33 HOH HOH . 
F 4 HOH B 32 214 213 HOH HOH . 
F 4 HOH B 33 215 214 HOH HOH . 
F 4 HOH B 34 216 35 HOH HOH . 
F 4 HOH B 35 217 41 HOH HOH . 
F 4 HOH B 36 218 44 HOH HOH . 
F 4 HOH B 37 219 218 HOH HOH . 
F 4 HOH B 38 220 45 HOH HOH . 
F 4 HOH B 39 221 50 HOH HOH . 
F 4 HOH B 40 222 51 HOH HOH . 
F 4 HOH B 41 223 222 HOH HOH . 
F 4 HOH B 42 224 223 HOH HOH . 
F 4 HOH B 43 225 224 HOH HOH . 
F 4 HOH B 44 226 52 HOH HOH . 
F 4 HOH B 45 227 55 HOH HOH . 
F 4 HOH B 46 228 60 HOH HOH . 
F 4 HOH B 47 229 64 HOH HOH . 
F 4 HOH B 48 230 67 HOH HOH . 
F 4 HOH B 49 231 230 HOH HOH . 
F 4 HOH B 50 232 68 HOH HOH . 
F 4 HOH B 51 233 69 HOH HOH . 
F 4 HOH B 52 234 71 HOH HOH . 
F 4 HOH B 53 235 74 HOH HOH . 
F 4 HOH B 54 236 235 HOH HOH . 
F 4 HOH B 55 237 236 HOH HOH . 
F 4 HOH B 56 238 237 HOH HOH . 
F 4 HOH B 57 239 238 HOH HOH . 
F 4 HOH B 58 240 239 HOH HOH . 
F 4 HOH B 59 241 75 HOH HOH . 
F 4 HOH B 60 242 76 HOH HOH . 
F 4 HOH B 61 243 77 HOH HOH . 
F 4 HOH B 62 244 82 HOH HOH . 
F 4 HOH B 63 245 84 HOH HOH . 
F 4 HOH B 64 246 245 HOH HOH . 
F 4 HOH B 65 247 246 HOH HOH . 
F 4 HOH B 66 248 247 HOH HOH . 
F 4 HOH B 67 249 85 HOH HOH . 
F 4 HOH B 68 250 91 HOH HOH . 
F 4 HOH B 69 251 92 HOH HOH . 
F 4 HOH B 70 252 93 HOH HOH . 
F 4 HOH B 71 253 94 HOH HOH . 
F 4 HOH B 72 254 95 HOH HOH . 
F 4 HOH B 73 255 97 HOH HOH . 
F 4 HOH B 74 256 110 HOH HOH . 
F 4 HOH B 75 257 256 HOH HOH . 
F 4 HOH B 76 258 257 HOH HOH . 
F 4 HOH B 77 259 112 HOH HOH . 
F 4 HOH B 78 260 259 HOH HOH . 
F 4 HOH B 79 261 260 HOH HOH . 
F 4 HOH B 80 262 261 HOH HOH . 
F 4 HOH B 81 263 262 HOH HOH . 
F 4 HOH B 82 264 263 HOH HOH . 
F 4 HOH B 83 265 264 HOH HOH . 
F 4 HOH B 84 266 265 HOH HOH . 
F 4 HOH B 85 267 113 HOH HOH . 
F 4 HOH B 86 268 267 HOH HOH . 
F 4 HOH B 87 269 268 HOH HOH . 
F 4 HOH B 88 270 114 HOH HOH . 
F 4 HOH B 89 271 128 HOH HOH . 
F 4 HOH B 90 272 129 HOH HOH . 
F 4 HOH B 91 273 130 HOH HOH . 
F 4 HOH B 92 274 131 HOH HOH . 
F 4 HOH B 93 275 132 HOH HOH . 
F 4 HOH B 94 276 133 HOH HOH . 
F 4 HOH B 95 277 134 HOH HOH . 
F 4 HOH B 96 278 135 HOH HOH . 
F 4 HOH B 97 279 136 HOH HOH . 
F 4 HOH B 98 280 137 HOH HOH . 
F 4 HOH B 99 281 138 HOH HOH . 
F 4 HOH B 100 282 139 HOH HOH . 
F 4 HOH B 101 283 140 HOH HOH . 
F 4 HOH B 102 284 141 HOH HOH . 
F 4 HOH B 103 285 142 HOH HOH . 
F 4 HOH B 104 286 143 HOH HOH . 
F 4 HOH B 105 287 144 HOH HOH . 
F 4 HOH B 106 288 145 HOH HOH . 
F 4 HOH B 107 289 146 HOH HOH . 
F 4 HOH B 108 290 148 HOH HOH . 
F 4 HOH B 109 291 150 HOH HOH . 
F 4 HOH B 110 292 151 HOH HOH . 
F 4 HOH B 111 293 152 HOH HOH . 
F 4 HOH B 112 294 153 HOH HOH . 
F 4 HOH B 113 295 154 HOH HOH . 
F 4 HOH B 114 296 155 HOH HOH . 
F 4 HOH B 115 297 156 HOH HOH . 
F 4 HOH B 116 298 157 HOH HOH . 
F 4 HOH B 117 299 158 HOH HOH . 
F 4 HOH B 118 300 159 HOH HOH . 
F 4 HOH B 119 301 160 HOH HOH . 
F 4 HOH B 120 302 161 HOH HOH . 
F 4 HOH B 121 303 162 HOH HOH . 
F 4 HOH B 122 304 163 HOH HOH . 
F 4 HOH B 123 305 165 HOH HOH . 
F 4 HOH B 124 306 166 HOH HOH . 
F 4 HOH B 125 307 168 HOH HOH . 
F 4 HOH B 126 308 169 HOH HOH . 
F 4 HOH B 127 309 174 HOH HOH . 
F 4 HOH B 128 310 175 HOH HOH . 
F 4 HOH B 129 311 177 HOH HOH . 
F 4 HOH B 130 312 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . C 2 -7.296 21.542 -5.585 0.7 37.24 ? P1 POP 182 A 1 
HETATM 2 O O1 POP . . . C 2 -5.869 22.033 -5.466 0.7 36.14 ? O1 POP 182 A 1 
HETATM 3 O O2 POP . . . C 2 -8.211 22.749 -5.542 0.7 36.95 ? O2 POP 182 A 1 
HETATM 4 O O3 POP . . . C 2 -7.479 20.795 -6.886 0.7 37.06 ? O3 POP 182 A 1 
HETATM 5 O O POP . . . C 2 -7.635 20.611 -4.302 0.7 36.46 ? O POP 182 A 1 
HETATM 6 P P2 POP . . . C 2 -7.78 18.996 -4.285 0.7 37.41 ? P2 POP 182 A 1 
HETATM 7 O O4 POP . . . C 2 -9.252 18.661 -4.23 0.7 35.07 ? O4 POP 182 A 1 
HETATM 8 O O5 POP . . . C 2 -7.106 18.46 -3.044 0.7 35.81 ? O5 POP 182 A 1 
HETATM 9 O O6 POP . . . C 2 -7.148 18.326 -5.485 0.7 35.85 ? O6 POP 182 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#