data_3RYP
#
_model_server_result.job_id            49fABId1NoP97NWDJf31og 
_model_server_result.datetime_utc      '2024-11-22 18:36:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ryp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":210}' 
#
_entry.id    3RYP 
#
_exptl.entry_id    3RYP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RYP 
_cell.length_a            46.18 
_cell.length_b            94.3 
_cell.length_c            105.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RYP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 166 n n 
C1 C2 GOL sing 167 n n 
C1 H11 GOL sing 168 n n 
C1 H12 GOL sing 169 n n 
O1 HO1 GOL sing 170 n n 
C2 O2 GOL sing 171 n n 
C2 C3 GOL sing 172 n n 
C2 H2 GOL sing 173 n n 
O2 HO2 GOL sing 174 n n 
C3 O3 GOL sing 175 n n 
C3 H31 GOL sing 176 n n 
C3 H32 GOL sing 177 n n 
O3 HO3 GOL sing 178 n n 
#
_atom_sites.entry_id                     3RYP 
_atom_sites.fract_transf_matrix[1][1]    0.021654 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009469 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CMP A 1 301 301 CMP CMP . 
D 3 GOL A 1 210 210 GOL GOL . 
E 3 GOL A 1 211 211 GOL GOL . 
F 3 GOL A 1 212 212 GOL GOL . 
G 2 CMP B 1 401 401 CMP CMP . 
H 4 HOH A 1 213 213 HOH HOH . 
H 4 HOH A 2 214 214 HOH HOH . 
H 4 HOH A 3 215 215 HOH HOH . 
H 4 HOH A 4 216 216 HOH HOH . 
H 4 HOH A 5 217 217 HOH HOH . 
H 4 HOH A 6 218 218 HOH HOH . 
H 4 HOH A 7 219 219 HOH HOH . 
H 4 HOH A 8 220 220 HOH HOH . 
H 4 HOH A 9 221 221 HOH HOH . 
H 4 HOH A 10 222 222 HOH HOH . 
H 4 HOH A 11 223 223 HOH HOH . 
H 4 HOH A 12 224 224 HOH HOH . 
H 4 HOH A 13 225 225 HOH HOH . 
H 4 HOH A 14 226 226 HOH HOH . 
H 4 HOH A 15 227 227 HOH HOH . 
H 4 HOH A 16 228 228 HOH HOH . 
H 4 HOH A 17 229 229 HOH HOH . 
H 4 HOH A 18 230 230 HOH HOH . 
H 4 HOH A 19 231 231 HOH HOH . 
H 4 HOH A 20 232 232 HOH HOH . 
H 4 HOH A 21 233 233 HOH HOH . 
H 4 HOH A 22 234 234 HOH HOH . 
H 4 HOH A 23 235 235 HOH HOH . 
H 4 HOH A 24 236 236 HOH HOH . 
H 4 HOH A 25 237 237 HOH HOH . 
H 4 HOH A 26 238 238 HOH HOH . 
H 4 HOH A 27 239 239 HOH HOH . 
H 4 HOH A 28 240 240 HOH HOH . 
H 4 HOH A 29 241 241 HOH HOH . 
H 4 HOH A 30 242 242 HOH HOH . 
H 4 HOH A 31 243 243 HOH HOH . 
H 4 HOH A 32 244 244 HOH HOH . 
H 4 HOH A 33 245 245 HOH HOH . 
H 4 HOH A 34 246 246 HOH HOH . 
H 4 HOH A 35 247 247 HOH HOH . 
H 4 HOH A 36 248 248 HOH HOH . 
H 4 HOH A 37 249 249 HOH HOH . 
H 4 HOH A 38 250 250 HOH HOH . 
H 4 HOH A 39 251 251 HOH HOH . 
H 4 HOH A 40 252 252 HOH HOH . 
H 4 HOH A 41 253 253 HOH HOH . 
H 4 HOH A 42 254 254 HOH HOH . 
H 4 HOH A 43 255 255 HOH HOH . 
H 4 HOH A 44 256 256 HOH HOH . 
H 4 HOH A 45 257 257 HOH HOH . 
H 4 HOH A 46 258 258 HOH HOH . 
H 4 HOH A 47 259 259 HOH HOH . 
H 4 HOH A 48 260 260 HOH HOH . 
H 4 HOH A 49 261 261 HOH HOH . 
H 4 HOH A 50 262 262 HOH HOH . 
H 4 HOH A 51 263 263 HOH HOH . 
H 4 HOH A 52 264 264 HOH HOH . 
H 4 HOH A 53 265 265 HOH HOH . 
H 4 HOH A 54 266 266 HOH HOH . 
H 4 HOH A 55 267 267 HOH HOH . 
H 4 HOH A 56 268 268 HOH HOH . 
H 4 HOH A 57 269 269 HOH HOH . 
H 4 HOH A 58 270 270 HOH HOH . 
H 4 HOH A 59 271 271 HOH HOH . 
H 4 HOH A 60 272 272 HOH HOH . 
H 4 HOH A 61 273 273 HOH HOH . 
H 4 HOH A 62 274 235 HOH HOH . 
H 4 HOH A 63 275 275 HOH HOH . 
H 4 HOH A 64 276 276 HOH HOH . 
H 4 HOH A 65 277 277 HOH HOH . 
H 4 HOH A 66 278 278 HOH HOH . 
H 4 HOH A 67 279 279 HOH HOH . 
H 4 HOH A 68 280 280 HOH HOH . 
H 4 HOH A 69 281 281 HOH HOH . 
H 4 HOH A 70 282 282 HOH HOH . 
H 4 HOH A 71 283 283 HOH HOH . 
H 4 HOH A 72 284 284 HOH HOH . 
H 4 HOH A 73 285 285 HOH HOH . 
H 4 HOH A 74 286 286 HOH HOH . 
H 4 HOH A 75 287 287 HOH HOH . 
H 4 HOH A 76 288 288 HOH HOH . 
H 4 HOH A 77 289 289 HOH HOH . 
I 4 HOH B 1 210 210 HOH HOH . 
I 4 HOH B 2 211 211 HOH HOH . 
I 4 HOH B 3 212 212 HOH HOH . 
I 4 HOH B 4 213 213 HOH HOH . 
I 4 HOH B 5 214 214 HOH HOH . 
I 4 HOH B 6 215 215 HOH HOH . 
I 4 HOH B 7 216 216 HOH HOH . 
I 4 HOH B 8 217 217 HOH HOH . 
I 4 HOH B 9 218 218 HOH HOH . 
I 4 HOH B 10 219 219 HOH HOH . 
I 4 HOH B 11 220 220 HOH HOH . 
I 4 HOH B 12 221 221 HOH HOH . 
I 4 HOH B 13 222 222 HOH HOH . 
I 4 HOH B 14 223 223 HOH HOH . 
I 4 HOH B 15 224 224 HOH HOH . 
I 4 HOH B 16 225 225 HOH HOH . 
I 4 HOH B 17 226 226 HOH HOH . 
I 4 HOH B 18 227 227 HOH HOH . 
I 4 HOH B 19 228 228 HOH HOH . 
I 4 HOH B 20 229 229 HOH HOH . 
I 4 HOH B 21 230 230 HOH HOH . 
I 4 HOH B 22 231 231 HOH HOH . 
I 4 HOH B 23 232 232 HOH HOH . 
I 4 HOH B 24 233 233 HOH HOH . 
I 4 HOH B 25 234 234 HOH HOH . 
I 4 HOH B 26 236 236 HOH HOH . 
I 4 HOH B 27 237 237 HOH HOH . 
I 4 HOH B 28 238 238 HOH HOH . 
I 4 HOH B 29 239 239 HOH HOH . 
I 4 HOH B 30 240 240 HOH HOH . 
I 4 HOH B 31 241 241 HOH HOH . 
I 4 HOH B 32 242 242 HOH HOH . 
I 4 HOH B 33 243 243 HOH HOH . 
I 4 HOH B 34 244 244 HOH HOH . 
I 4 HOH B 35 245 245 HOH HOH . 
I 4 HOH B 36 246 246 HOH HOH . 
I 4 HOH B 37 247 247 HOH HOH . 
I 4 HOH B 38 248 248 HOH HOH . 
I 4 HOH B 39 249 249 HOH HOH . 
I 4 HOH B 40 250 250 HOH HOH . 
I 4 HOH B 41 251 251 HOH HOH . 
I 4 HOH B 42 252 252 HOH HOH . 
I 4 HOH B 43 253 253 HOH HOH . 
I 4 HOH B 44 254 254 HOH HOH . 
I 4 HOH B 45 255 255 HOH HOH . 
I 4 HOH B 46 256 256 HOH HOH . 
I 4 HOH B 47 257 257 HOH HOH . 
I 4 HOH B 48 258 258 HOH HOH . 
I 4 HOH B 49 259 259 HOH HOH . 
I 4 HOH B 50 260 260 HOH HOH . 
I 4 HOH B 51 261 261 HOH HOH . 
I 4 HOH B 52 262 262 HOH HOH . 
I 4 HOH B 53 263 263 HOH HOH . 
I 4 HOH B 54 264 264 HOH HOH . 
I 4 HOH B 55 265 265 HOH HOH . 
I 4 HOH B 56 266 266 HOH HOH . 
I 4 HOH B 57 267 267 HOH HOH . 
I 4 HOH B 58 268 268 HOH HOH . 
I 4 HOH B 59 269 269 HOH HOH . 
I 4 HOH B 60 270 270 HOH HOH . 
I 4 HOH B 61 271 271 HOH HOH . 
I 4 HOH B 62 272 272 HOH HOH . 
I 4 HOH B 63 273 273 HOH HOH . 
I 4 HOH B 64 274 274 HOH HOH . 
I 4 HOH B 65 275 275 HOH HOH . 
I 4 HOH B 66 276 276 HOH HOH . 
I 4 HOH B 67 277 277 HOH HOH . 
I 4 HOH B 68 278 278 HOH HOH . 
I 4 HOH B 69 279 279 HOH HOH . 
I 4 HOH B 70 280 280 HOH HOH . 
I 4 HOH B 71 281 281 HOH HOH . 
I 4 HOH B 72 282 282 HOH HOH . 
I 4 HOH B 73 283 283 HOH HOH . 
I 4 HOH B 74 284 274 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 34.259 50.006 32.964 1 53.84 ? C1 GOL 210 A 1 
HETATM 2 O O1 GOL . . . D 3 33.384 51.102 32.685 1 43.88 ? O1 GOL 210 A 1 
HETATM 3 C C2 GOL . . . D 3 35.034 50.252 34.26 1 41.49 ? C2 GOL 210 A 1 
HETATM 4 O O2 GOL . . . D 3 34.131 50.348 35.372 1 36.93 ? O2 GOL 210 A 1 
HETATM 5 C C3 GOL . . . D 3 36.007 49.099 34.509 1 31.09 ? C3 GOL 210 A 1 
HETATM 6 O O3 GOL . . . D 3 36.732 49.356 35.71 1 83.1 ? O3 GOL 210 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#