data_3RYP # _model_server_result.job_id M_srMDWUqlI-G7TV5UEcng _model_server_result.datetime_utc '2024-11-22 18:31:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ryp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 3RYP # _exptl.entry_id 3RYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RYP _cell.length_a 46.18 _cell.length_b 94.3 _cell.length_c 105.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3RYP _atom_sites.fract_transf_matrix[1][1] 0.021654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009469 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 301 CMP CMP . D 3 GOL A 1 210 210 GOL GOL . E 3 GOL A 1 211 211 GOL GOL . F 3 GOL A 1 212 212 GOL GOL . G 2 CMP B 1 401 401 CMP CMP . H 4 HOH A 1 213 213 HOH HOH . H 4 HOH A 2 214 214 HOH HOH . H 4 HOH A 3 215 215 HOH HOH . H 4 HOH A 4 216 216 HOH HOH . H 4 HOH A 5 217 217 HOH HOH . H 4 HOH A 6 218 218 HOH HOH . H 4 HOH A 7 219 219 HOH HOH . H 4 HOH A 8 220 220 HOH HOH . H 4 HOH A 9 221 221 HOH HOH . H 4 HOH A 10 222 222 HOH HOH . H 4 HOH A 11 223 223 HOH HOH . H 4 HOH A 12 224 224 HOH HOH . H 4 HOH A 13 225 225 HOH HOH . H 4 HOH A 14 226 226 HOH HOH . H 4 HOH A 15 227 227 HOH HOH . H 4 HOH A 16 228 228 HOH HOH . H 4 HOH A 17 229 229 HOH HOH . H 4 HOH A 18 230 230 HOH HOH . H 4 HOH A 19 231 231 HOH HOH . H 4 HOH A 20 232 232 HOH HOH . H 4 HOH A 21 233 233 HOH HOH . H 4 HOH A 22 234 234 HOH HOH . H 4 HOH A 23 235 235 HOH HOH . H 4 HOH A 24 236 236 HOH HOH . H 4 HOH A 25 237 237 HOH HOH . H 4 HOH A 26 238 238 HOH HOH . H 4 HOH A 27 239 239 HOH HOH . H 4 HOH A 28 240 240 HOH HOH . H 4 HOH A 29 241 241 HOH HOH . H 4 HOH A 30 242 242 HOH HOH . H 4 HOH A 31 243 243 HOH HOH . H 4 HOH A 32 244 244 HOH HOH . H 4 HOH A 33 245 245 HOH HOH . H 4 HOH A 34 246 246 HOH HOH . H 4 HOH A 35 247 247 HOH HOH . H 4 HOH A 36 248 248 HOH HOH . H 4 HOH A 37 249 249 HOH HOH . H 4 HOH A 38 250 250 HOH HOH . H 4 HOH A 39 251 251 HOH HOH . H 4 HOH A 40 252 252 HOH HOH . H 4 HOH A 41 253 253 HOH HOH . H 4 HOH A 42 254 254 HOH HOH . H 4 HOH A 43 255 255 HOH HOH . H 4 HOH A 44 256 256 HOH HOH . H 4 HOH A 45 257 257 HOH HOH . H 4 HOH A 46 258 258 HOH HOH . H 4 HOH A 47 259 259 HOH HOH . H 4 HOH A 48 260 260 HOH HOH . H 4 HOH A 49 261 261 HOH HOH . H 4 HOH A 50 262 262 HOH HOH . H 4 HOH A 51 263 263 HOH HOH . H 4 HOH A 52 264 264 HOH HOH . H 4 HOH A 53 265 265 HOH HOH . H 4 HOH A 54 266 266 HOH HOH . H 4 HOH A 55 267 267 HOH HOH . H 4 HOH A 56 268 268 HOH HOH . H 4 HOH A 57 269 269 HOH HOH . H 4 HOH A 58 270 270 HOH HOH . H 4 HOH A 59 271 271 HOH HOH . H 4 HOH A 60 272 272 HOH HOH . H 4 HOH A 61 273 273 HOH HOH . H 4 HOH A 62 274 235 HOH HOH . H 4 HOH A 63 275 275 HOH HOH . H 4 HOH A 64 276 276 HOH HOH . H 4 HOH A 65 277 277 HOH HOH . H 4 HOH A 66 278 278 HOH HOH . H 4 HOH A 67 279 279 HOH HOH . H 4 HOH A 68 280 280 HOH HOH . H 4 HOH A 69 281 281 HOH HOH . H 4 HOH A 70 282 282 HOH HOH . H 4 HOH A 71 283 283 HOH HOH . H 4 HOH A 72 284 284 HOH HOH . H 4 HOH A 73 285 285 HOH HOH . H 4 HOH A 74 286 286 HOH HOH . H 4 HOH A 75 287 287 HOH HOH . H 4 HOH A 76 288 288 HOH HOH . H 4 HOH A 77 289 289 HOH HOH . I 4 HOH B 1 210 210 HOH HOH . I 4 HOH B 2 211 211 HOH HOH . I 4 HOH B 3 212 212 HOH HOH . I 4 HOH B 4 213 213 HOH HOH . I 4 HOH B 5 214 214 HOH HOH . I 4 HOH B 6 215 215 HOH HOH . I 4 HOH B 7 216 216 HOH HOH . I 4 HOH B 8 217 217 HOH HOH . I 4 HOH B 9 218 218 HOH HOH . I 4 HOH B 10 219 219 HOH HOH . I 4 HOH B 11 220 220 HOH HOH . I 4 HOH B 12 221 221 HOH HOH . I 4 HOH B 13 222 222 HOH HOH . I 4 HOH B 14 223 223 HOH HOH . I 4 HOH B 15 224 224 HOH HOH . I 4 HOH B 16 225 225 HOH HOH . I 4 HOH B 17 226 226 HOH HOH . I 4 HOH B 18 227 227 HOH HOH . I 4 HOH B 19 228 228 HOH HOH . I 4 HOH B 20 229 229 HOH HOH . I 4 HOH B 21 230 230 HOH HOH . I 4 HOH B 22 231 231 HOH HOH . I 4 HOH B 23 232 232 HOH HOH . I 4 HOH B 24 233 233 HOH HOH . I 4 HOH B 25 234 234 HOH HOH . I 4 HOH B 26 236 236 HOH HOH . I 4 HOH B 27 237 237 HOH HOH . I 4 HOH B 28 238 238 HOH HOH . I 4 HOH B 29 239 239 HOH HOH . I 4 HOH B 30 240 240 HOH HOH . I 4 HOH B 31 241 241 HOH HOH . I 4 HOH B 32 242 242 HOH HOH . I 4 HOH B 33 243 243 HOH HOH . I 4 HOH B 34 244 244 HOH HOH . I 4 HOH B 35 245 245 HOH HOH . I 4 HOH B 36 246 246 HOH HOH . I 4 HOH B 37 247 247 HOH HOH . I 4 HOH B 38 248 248 HOH HOH . I 4 HOH B 39 249 249 HOH HOH . I 4 HOH B 40 250 250 HOH HOH . I 4 HOH B 41 251 251 HOH HOH . I 4 HOH B 42 252 252 HOH HOH . I 4 HOH B 43 253 253 HOH HOH . I 4 HOH B 44 254 254 HOH HOH . I 4 HOH B 45 255 255 HOH HOH . I 4 HOH B 46 256 256 HOH HOH . I 4 HOH B 47 257 257 HOH HOH . I 4 HOH B 48 258 258 HOH HOH . I 4 HOH B 49 259 259 HOH HOH . I 4 HOH B 50 260 260 HOH HOH . I 4 HOH B 51 261 261 HOH HOH . I 4 HOH B 52 262 262 HOH HOH . I 4 HOH B 53 263 263 HOH HOH . I 4 HOH B 54 264 264 HOH HOH . I 4 HOH B 55 265 265 HOH HOH . I 4 HOH B 56 266 266 HOH HOH . I 4 HOH B 57 267 267 HOH HOH . I 4 HOH B 58 268 268 HOH HOH . I 4 HOH B 59 269 269 HOH HOH . I 4 HOH B 60 270 270 HOH HOH . I 4 HOH B 61 271 271 HOH HOH . I 4 HOH B 62 272 272 HOH HOH . I 4 HOH B 63 273 273 HOH HOH . I 4 HOH B 64 274 274 HOH HOH . I 4 HOH B 65 275 275 HOH HOH . I 4 HOH B 66 276 276 HOH HOH . I 4 HOH B 67 277 277 HOH HOH . I 4 HOH B 68 278 278 HOH HOH . I 4 HOH B 69 279 279 HOH HOH . I 4 HOH B 70 280 280 HOH HOH . I 4 HOH B 71 281 281 HOH HOH . I 4 HOH B 72 282 282 HOH HOH . I 4 HOH B 73 283 283 HOH HOH . I 4 HOH B 74 284 274 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . G 2 18.747 43.136 44.811 1 19.78 ? P CMP 401 B 1 HETATM 2 O O1P CMP . . . G 2 19.604 44.155 44.162 1 20.03 ? O1P CMP 401 B 1 HETATM 3 O O2P CMP . . . G 2 17.761 43.601 45.812 1 21.19 ? O2P CMP 401 B 1 HETATM 4 O O5' CMP . . . G 2 17.943 42.358 43.657 1 19.84 ? O5' CMP 401 B 1 HETATM 5 C C5' CMP . . . G 2 18.773 41.636 42.726 1 20.13 ? C5' CMP 401 B 1 HETATM 6 C C4' CMP . . . G 2 19.512 40.585 43.53 1 19.63 ? C4' CMP 401 B 1 HETATM 7 O O4' CMP . . . G 2 20.442 39.855 42.717 1 19.25 ? O4' CMP 401 B 1 HETATM 8 C C3' CMP . . . G 2 20.431 41.32 44.479 1 19.34 ? C3' CMP 401 B 1 HETATM 9 O O3' CMP . . . G 2 19.667 41.996 45.493 1 18.08 ? O3' CMP 401 B 1 HETATM 10 C C2' CMP . . . G 2 21.257 40.125 44.94 1 19.41 ? C2' CMP 401 B 1 HETATM 11 O O2' CMP . . . G 2 20.491 39.216 45.749 1 19.38 ? O2' CMP 401 B 1 HETATM 12 C C1' CMP . . . G 2 21.511 39.442 43.596 1 19.07 ? C1' CMP 401 B 1 HETATM 13 N N9 CMP . . . G 2 22.819 39.836 42.999 1 18.74 ? N9 CMP 401 B 1 HETATM 14 C C8 CMP . . . G 2 23.118 40.963 42.355 1 18.72 ? C8 CMP 401 B 1 HETATM 15 N N7 CMP . . . G 2 24.416 40.937 42.062 1 18.36 ? N7 CMP 401 B 1 HETATM 16 C C5 CMP . . . G 2 24.938 39.79 42.5 1 18.62 ? C5 CMP 401 B 1 HETATM 17 C C6 CMP . . . G 2 26.157 39.244 42.417 1 18.78 ? C6 CMP 401 B 1 HETATM 18 N N6 CMP . . . G 2 27.129 39.888 41.765 1 19.69 ? N6 CMP 401 B 1 HETATM 19 N N1 CMP . . . G 2 26.403 38.028 42.92 1 18.56 ? N1 CMP 401 B 1 HETATM 20 C C2 CMP . . . G 2 25.369 37.282 43.497 1 19.38 ? C2 CMP 401 B 1 HETATM 21 N N3 CMP . . . G 2 24.095 37.86 43.522 1 19.41 ? N3 CMP 401 B 1 HETATM 22 C C4 CMP . . . G 2 23.934 39.109 43.06 1 19.13 ? C4 CMP 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #