data_3RYR
#
_model_server_result.job_id            uh5hBX2rATNtlbc1j4azZw 
_model_server_result.datetime_utc      '2024-10-19 20:16:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ryr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    3RYR 
#
_exptl.entry_id    3RYR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.12 
_cell.angle_gamma         90 
_cell.entry_id            3RYR 
_cell.length_a            45.57 
_cell.length_b            101.28 
_cell.length_c            54.12 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RYR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     3RYR 
_atom_sites.fract_transf_matrix[1][1]    0.021944 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008476 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019808 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CMP A 1 301 301 CMP CMP . 
D 2 CMP A 1 302 302 CMP CMP . 
E 2 CMP B 1 401 401 CMP CMP . 
F 3 HOH A 1 210 1 HOH HOH . 
F 3 HOH A 2 211 2 HOH HOH . 
F 3 HOH A 3 212 5 HOH HOH . 
F 3 HOH A 4 213 7 HOH HOH . 
F 3 HOH A 5 214 8 HOH HOH . 
F 3 HOH A 6 215 9 HOH HOH . 
G 3 HOH B 1 210 3 HOH HOH . 
G 3 HOH B 2 211 4 HOH HOH . 
G 3 HOH B 3 212 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . D 2 -8.93 16.408 36.173 1 70.79 ? P CMP 302 A 1 
HETATM 2 O O1P CMP . . . D 2 -8.565 16.209 37.606 1 84.36 ? O1P CMP 302 A 1 
HETATM 3 O O2P CMP . . . D 2 -9.918 17.453 35.835 1 113.06 ? O2P CMP 302 A 1 
HETATM 4 O O5' CMP . . . D 2 -7.535 16.929 35.408 1 81.01 ? O5' CMP 302 A 1 
HETATM 5 C C5' CMP . . . D 2 -6.867 16.267 34.272 1 74.87 ? C5' CMP 302 A 1 
HETATM 6 C C4' CMP . . . D 2 -7.553 14.973 33.763 1 72.31 ? C4' CMP 302 A 1 
HETATM 7 O O4' CMP . . . D 2 -6.679 14.016 33.228 1 97.33 ? O4' CMP 302 A 1 
HETATM 8 C C3' CMP . . . D 2 -8.204 14.282 34.92 1 76.89 ? C3' CMP 302 A 1 
HETATM 9 O O3' CMP . . . D 2 -9.325 15.027 35.425 1 105.23 ? O3' CMP 302 A 1 
HETATM 10 C C2' CMP . . . D 2 -8.389 12.889 34.465 1 74.71 ? C2' CMP 302 A 1 
HETATM 11 O O2' CMP . . . D 2 -9.671 12.659 33.919 1 57.92 ? O2' CMP 302 A 1 
HETATM 12 C C1' CMP . . . D 2 -7.333 12.749 33.359 1 92.6 ? C1' CMP 302 A 1 
HETATM 13 N N9 CMP . . . D 2 -6.244 11.758 33.656 1 78.35 ? N9 CMP 302 A 1 
HETATM 14 C C8 CMP . . . D 2 -5.609 10.903 32.769 1 72.96 ? C8 CMP 302 A 1 
HETATM 15 N N7 CMP . . . D 2 -4.684 10.141 33.297 1 72.72 ? N7 CMP 302 A 1 
HETATM 16 C C5 CMP . . . D 2 -4.69 10.506 34.639 1 60.33 ? C5 CMP 302 A 1 
HETATM 17 C C6 CMP . . . D 2 -3.93 10.065 35.758 1 59.97 ? C6 CMP 302 A 1 
HETATM 18 N N6 CMP . . . D 2 -3.003 9.127 35.633 1 56.79 ? N6 CMP 302 A 1 
HETATM 19 N N1 CMP . . . D 2 -4.167 10.631 36.992 1 64.79 ? N1 CMP 302 A 1 
HETATM 20 C C2 CMP . . . D 2 -5.121 11.59 37.093 1 56.44 ? C2 CMP 302 A 1 
HETATM 21 N N3 CMP . . . D 2 -5.909 12.095 36.125 1 54.14 ? N3 CMP 302 A 1 
HETATM 22 C C4 CMP . . . D 2 -5.636 11.494 34.885 1 63.63 ? C4 CMP 302 A 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#