data_3RYS # _model_server_result.job_id uEX3ZUALqm0LzrGcrDTPUg _model_server_result.datetime_utc '2025-04-07 01:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":345}' # _entry.id 3RYS # _exptl.entry_id 3RYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RYS _cell.length_a 124.104 _cell.length_b 124.104 _cell.length_c 89.724 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 19 A HIS 19 1_555 C ZN ZN . A ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A NE2 HIS 21 A HIS 21 1_555 C ZN ZN . A ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 A NE2 HIS 199 A HIS 199 1_555 C ZN ZN . A ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 A OD2 ASP 280 A ASP 280 1_555 C ZN ZN . A ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 C ZN ZN . A ZN 344 1_555 D N6 ADE . A ADE 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc6 B NE2 HIS 19 B HIS 19 1_555 E ZN ZN . B ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc7 B NE2 HIS 21 B HIS 21 1_555 E ZN ZN . B ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 B NE2 HIS 199 B HIS 199 1_555 E ZN ZN . B ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 B OD2 ASP 280 B ASP 280 1_555 E ZN ZN . B ZN 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 3RYS _atom_sites.fract_transf_matrix[1][1] 0.008058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008058 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 344 344 ZN ZN . D 3 ADE A 1 345 345 ADE ADE . E 2 ZN B 1 344 344 ZN ZN . F 3 ADE B 1 345 345 ADE ADE . G 4 HOH A 1 346 346 HOH HOH . G 4 HOH A 2 347 347 HOH HOH . G 4 HOH A 3 348 348 HOH HOH . G 4 HOH A 4 349 349 HOH HOH . G 4 HOH A 5 350 350 HOH HOH . G 4 HOH A 6 351 351 HOH HOH . G 4 HOH A 7 352 352 HOH HOH . G 4 HOH A 8 353 353 HOH HOH . G 4 HOH A 9 354 354 HOH HOH . G 4 HOH A 10 355 355 HOH HOH . G 4 HOH A 11 356 356 HOH HOH . G 4 HOH A 12 357 357 HOH HOH . G 4 HOH A 13 358 358 HOH HOH . G 4 HOH A 14 359 359 HOH HOH . G 4 HOH A 15 360 360 HOH HOH . G 4 HOH A 16 361 361 HOH HOH . G 4 HOH A 17 362 362 HOH HOH . G 4 HOH A 18 363 363 HOH HOH . G 4 HOH A 19 364 364 HOH HOH . G 4 HOH A 20 365 365 HOH HOH . G 4 HOH A 21 366 366 HOH HOH . G 4 HOH A 22 367 367 HOH HOH . G 4 HOH A 23 368 368 HOH HOH . G 4 HOH A 24 369 369 HOH HOH . G 4 HOH A 25 370 370 HOH HOH . G 4 HOH A 26 371 371 HOH HOH . G 4 HOH A 27 372 372 HOH HOH . G 4 HOH A 28 373 373 HOH HOH . G 4 HOH A 29 374 374 HOH HOH . G 4 HOH A 30 375 375 HOH HOH . G 4 HOH A 31 376 376 HOH HOH . G 4 HOH A 32 377 377 HOH HOH . G 4 HOH A 33 378 378 HOH HOH . G 4 HOH A 34 379 379 HOH HOH . G 4 HOH A 35 380 380 HOH HOH . G 4 HOH A 36 381 381 HOH HOH . G 4 HOH A 37 382 382 HOH HOH . G 4 HOH A 38 383 383 HOH HOH . G 4 HOH A 39 384 384 HOH HOH . G 4 HOH A 40 385 385 HOH HOH . G 4 HOH A 41 386 386 HOH HOH . G 4 HOH A 42 387 387 HOH HOH . H 4 HOH B 1 346 346 HOH HOH . H 4 HOH B 2 347 347 HOH HOH . H 4 HOH B 3 348 348 HOH HOH . H 4 HOH B 4 349 349 HOH HOH . H 4 HOH B 5 350 350 HOH HOH . H 4 HOH B 6 351 351 HOH HOH . H 4 HOH B 7 352 352 HOH HOH . H 4 HOH B 8 353 353 HOH HOH . H 4 HOH B 9 354 354 HOH HOH . H 4 HOH B 10 355 355 HOH HOH . H 4 HOH B 11 356 356 HOH HOH . H 4 HOH B 12 357 357 HOH HOH . H 4 HOH B 13 358 358 HOH HOH . H 4 HOH B 14 359 359 HOH HOH . H 4 HOH B 15 360 360 HOH HOH . H 4 HOH B 16 361 361 HOH HOH . H 4 HOH B 17 362 362 HOH HOH . H 4 HOH B 18 363 363 HOH HOH . H 4 HOH B 19 364 364 HOH HOH . H 4 HOH B 20 365 365 HOH HOH . H 4 HOH B 21 366 366 HOH HOH . H 4 HOH B 22 367 367 HOH HOH . H 4 HOH B 23 368 368 HOH HOH . H 4 HOH B 24 369 369 HOH HOH . H 4 HOH B 25 370 370 HOH HOH . H 4 HOH B 26 371 371 HOH HOH . H 4 HOH B 27 372 372 HOH HOH . H 4 HOH B 28 373 373 HOH HOH . H 4 HOH B 29 374 374 HOH HOH . H 4 HOH B 30 375 375 HOH HOH . H 4 HOH B 31 376 376 HOH HOH . H 4 HOH B 32 377 377 HOH HOH . H 4 HOH B 33 378 378 HOH HOH . H 4 HOH B 34 379 379 HOH HOH . H 4 HOH B 35 380 380 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . D 3 -2.764 24.32 -32.751 1 18.84 ? N9 ADE 345 A 1 HETATM 2 C C8 ADE . . . D 3 -1.52 23.937 -33.178 1 21.89 ? C8 ADE 345 A 1 HETATM 3 N N7 ADE . . . D 3 -1.463 23.606 -34.451 1 20.3 ? N7 ADE 345 A 1 HETATM 4 C C5 ADE . . . D 3 -2.769 23.783 -34.887 1 22.54 ? C5 ADE 345 A 1 HETATM 5 C C6 ADE . . . D 3 -3.381 23.6 -36.146 1 23.31 ? C6 ADE 345 A 1 HETATM 6 N N6 ADE . . . D 3 -2.715 23.178 -37.227 1 21.81 ? N6 ADE 345 A 1 HETATM 7 N N1 ADE . . . D 3 -4.703 23.867 -36.246 1 22.49 ? N1 ADE 345 A 1 HETATM 8 C C2 ADE . . . D 3 -5.362 24.287 -35.156 1 22.84 ? C2 ADE 345 A 1 HETATM 9 N N3 ADE . . . D 3 -4.899 24.498 -33.921 1 21.82 ? N3 ADE 345 A 1 HETATM 10 C C4 ADE . . . D 3 -3.584 24.223 -33.854 1 20.84 ? C4 ADE 345 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #