data_3RYX # _model_server_result.job_id tvHMSxhZ-PyGPLm3uDJvoQ _model_server_result.datetime_utc '2024-11-05 07:50:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ryx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3RYX # _exptl.entry_id 3RYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,2,3,3,3-pentafluoropropyl)-4-sulfamoylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.58 _cell.angle_gamma 90 _cell.entry_id 3RYX _cell.length_a 42.58 _cell.length_b 41.781 _cell.length_c 72.348 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C N3S RYX . B RYX 1 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A NE2 HIS 93 B HIS 94 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc3 A NE2 HIS 95 B HIS 96 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A ND1 HIS 118 B HIS 119 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'C10 H9 F5 N2 O3 S' _chem_comp.formula_weight 332.247 _chem_comp.id RYX _chem_comp.mon_nstd_flag . _chem_comp.name N-(2,2,3,3,3-pentafluoropropyl)-4-sulfamoylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 S RYX sing 277 n n N3S S RYX sing 278 n n O1S S RYX doub 279 n n S O2S RYX doub 280 n n C1' N' RYX sing 281 n n N' C7 RYX sing 282 n n N' HN' RYX sing 283 n n O' C7 RYX doub 284 n n C7 C1 RYX sing 285 n n C1 C5 RYX doub 286 n y C1 C3 RYX sing 287 n y C3 C2 RYX doub 288 n y C2 C4 RYX sing 289 n y C2 H2 RYX sing 290 n n C3 H3 RYX sing 291 n n C6 C4 RYX doub 292 n y C5 C6 RYX sing 293 n y C5 H5 RYX sing 294 n n C6 H6 RYX sing 295 n n "F2'1" C2' RYX sing 296 n n "F3'1" C3' RYX sing 297 n n C2' "F2'2" RYX sing 298 n n C3' "F3'2" RYX sing 299 n n C3' "F3'3" RYX sing 300 n n C1' C2' RYX sing 301 n n C1' H1' RYX sing 302 n n C1' "H1'A" RYX sing 303 n n C3' C2' RYX sing 304 n n N3S HN3S RYX sing 305 n n N3S HN3A RYX sing 306 n n # _atom_sites.entry_id 3RYX _atom_sites.fract_transf_matrix[1][1] 0.023485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005672 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN B 1 262 262 ZN ZN . C 3 RYX B 1 1 1 RYX RYX . D 4 HOH B 1 126 126 HOH HOH . D 4 HOH B 2 263 1 HOH HOH . D 4 HOH B 3 264 2 HOH HOH . D 4 HOH B 4 265 4 HOH HOH . D 4 HOH B 5 266 7 HOH HOH . D 4 HOH B 6 267 9 HOH HOH . D 4 HOH B 7 268 10 HOH HOH . D 4 HOH B 8 269 11 HOH HOH . D 4 HOH B 9 270 12 HOH HOH . D 4 HOH B 10 271 14 HOH HOH . D 4 HOH B 11 272 15 HOH HOH . D 4 HOH B 12 273 16 HOH HOH . D 4 HOH B 13 274 17 HOH HOH . D 4 HOH B 14 275 18 HOH HOH . D 4 HOH B 15 276 19 HOH HOH . D 4 HOH B 16 277 20 HOH HOH . D 4 HOH B 17 278 22 HOH HOH . D 4 HOH B 18 279 23 HOH HOH . D 4 HOH B 19 280 24 HOH HOH . D 4 HOH B 20 281 25 HOH HOH . D 4 HOH B 21 282 26 HOH HOH . D 4 HOH B 22 283 27 HOH HOH . D 4 HOH B 23 284 28 HOH HOH . D 4 HOH B 24 285 30 HOH HOH . D 4 HOH B 25 286 31 HOH HOH . D 4 HOH B 26 287 32 HOH HOH . D 4 HOH B 27 288 33 HOH HOH . D 4 HOH B 28 289 34 HOH HOH . D 4 HOH B 29 290 35 HOH HOH . D 4 HOH B 30 291 36 HOH HOH . D 4 HOH B 31 292 37 HOH HOH . D 4 HOH B 32 293 38 HOH HOH . D 4 HOH B 33 294 39 HOH HOH . D 4 HOH B 34 295 40 HOH HOH . D 4 HOH B 35 296 41 HOH HOH . D 4 HOH B 36 297 42 HOH HOH . D 4 HOH B 37 298 43 HOH HOH . D 4 HOH B 38 299 44 HOH HOH . D 4 HOH B 39 300 47 HOH HOH . D 4 HOH B 40 301 48 HOH HOH . D 4 HOH B 41 302 49 HOH HOH . D 4 HOH B 42 303 50 HOH HOH . D 4 HOH B 43 304 51 HOH HOH . D 4 HOH B 44 305 52 HOH HOH . D 4 HOH B 45 306 53 HOH HOH . D 4 HOH B 46 307 55 HOH HOH . D 4 HOH B 47 308 56 HOH HOH . D 4 HOH B 48 309 58 HOH HOH . D 4 HOH B 49 310 59 HOH HOH . D 4 HOH B 50 311 60 HOH HOH . D 4 HOH B 51 312 61 HOH HOH . D 4 HOH B 52 313 64 HOH HOH . D 4 HOH B 53 314 66 HOH HOH . D 4 HOH B 54 315 67 HOH HOH . D 4 HOH B 55 316 69 HOH HOH . D 4 HOH B 56 317 70 HOH HOH . D 4 HOH B 57 318 74 HOH HOH . D 4 HOH B 58 319 75 HOH HOH . D 4 HOH B 59 320 76 HOH HOH . D 4 HOH B 60 321 77 HOH HOH . D 4 HOH B 61 322 78 HOH HOH . D 4 HOH B 62 323 79 HOH HOH . D 4 HOH B 63 324 80 HOH HOH . D 4 HOH B 64 325 82 HOH HOH . D 4 HOH B 65 326 83 HOH HOH . D 4 HOH B 66 327 84 HOH HOH . D 4 HOH B 67 328 85 HOH HOH . D 4 HOH B 68 329 86 HOH HOH . D 4 HOH B 69 330 87 HOH HOH . D 4 HOH B 70 331 88 HOH HOH . D 4 HOH B 71 332 90 HOH HOH . D 4 HOH B 72 333 92 HOH HOH . D 4 HOH B 73 334 93 HOH HOH . D 4 HOH B 74 335 95 HOH HOH . D 4 HOH B 75 336 97 HOH HOH . D 4 HOH B 76 337 98 HOH HOH . D 4 HOH B 77 338 100 HOH HOH . D 4 HOH B 78 339 101 HOH HOH . D 4 HOH B 79 340 102 HOH HOH . D 4 HOH B 80 341 103 HOH HOH . D 4 HOH B 81 342 104 HOH HOH . D 4 HOH B 82 343 106 HOH HOH . D 4 HOH B 83 344 107 HOH HOH . D 4 HOH B 84 345 108 HOH HOH . D 4 HOH B 85 346 109 HOH HOH . D 4 HOH B 86 347 112 HOH HOH . D 4 HOH B 87 348 114 HOH HOH . D 4 HOH B 88 349 115 HOH HOH . D 4 HOH B 89 350 116 HOH HOH . D 4 HOH B 90 351 117 HOH HOH . D 4 HOH B 91 352 118 HOH HOH . D 4 HOH B 92 353 119 HOH HOH . D 4 HOH B 93 354 120 HOH HOH . D 4 HOH B 94 355 121 HOH HOH . D 4 HOH B 95 356 122 HOH HOH . D 4 HOH B 96 357 123 HOH HOH . D 4 HOH B 97 358 124 HOH HOH . D 4 HOH B 98 359 125 HOH HOH . D 4 HOH B 99 360 127 HOH HOH . D 4 HOH B 100 361 128 HOH HOH . D 4 HOH B 101 362 129 HOH HOH . D 4 HOH B 102 363 130 HOH HOH . D 4 HOH B 103 364 131 HOH HOH . D 4 HOH B 104 365 132 HOH HOH . D 4 HOH B 105 366 133 HOH HOH . D 4 HOH B 106 367 134 HOH HOH . D 4 HOH B 107 368 135 HOH HOH . D 4 HOH B 108 369 136 HOH HOH . D 4 HOH B 109 370 137 HOH HOH . D 4 HOH B 110 371 139 HOH HOH . D 4 HOH B 111 372 141 HOH HOH . D 4 HOH B 112 373 142 HOH HOH . D 4 HOH B 113 374 145 HOH HOH . D 4 HOH B 114 375 146 HOH HOH . D 4 HOH B 115 376 147 HOH HOH . D 4 HOH B 116 377 148 HOH HOH . D 4 HOH B 117 378 150 HOH HOH . D 4 HOH B 118 379 153 HOH HOH . D 4 HOH B 119 380 154 HOH HOH . D 4 HOH B 120 381 157 HOH HOH . D 4 HOH B 121 382 160 HOH HOH . D 4 HOH B 122 383 161 HOH HOH . D 4 HOH B 123 384 162 HOH HOH . D 4 HOH B 124 385 163 HOH HOH . D 4 HOH B 125 386 165 HOH HOH . D 4 HOH B 126 387 167 HOH HOH . D 4 HOH B 127 388 168 HOH HOH . D 4 HOH B 128 389 169 HOH HOH . D 4 HOH B 129 390 171 HOH HOH . D 4 HOH B 130 391 172 HOH HOH . D 4 HOH B 131 392 173 HOH HOH . D 4 HOH B 132 393 174 HOH HOH . D 4 HOH B 133 394 177 HOH HOH . D 4 HOH B 134 395 178 HOH HOH . D 4 HOH B 135 396 179 HOH HOH . D 4 HOH B 136 397 180 HOH HOH . D 4 HOH B 137 398 181 HOH HOH . D 4 HOH B 138 399 183 HOH HOH . D 4 HOH B 139 400 186 HOH HOH . D 4 HOH B 140 401 187 HOH HOH . D 4 HOH B 141 402 189 HOH HOH . D 4 HOH B 142 403 190 HOH HOH . D 4 HOH B 143 404 193 HOH HOH . D 4 HOH B 144 405 194 HOH HOH . D 4 HOH B 145 406 195 HOH HOH . D 4 HOH B 146 407 196 HOH HOH . D 4 HOH B 147 408 197 HOH HOH . D 4 HOH B 148 409 198 HOH HOH . D 4 HOH B 149 410 199 HOH HOH . D 4 HOH B 150 411 201 HOH HOH . D 4 HOH B 151 412 202 HOH HOH . D 4 HOH B 152 413 203 HOH HOH . D 4 HOH B 153 414 204 HOH HOH . D 4 HOH B 154 415 205 HOH HOH . D 4 HOH B 155 416 206 HOH HOH . D 4 HOH B 156 417 207 HOH HOH . D 4 HOH B 157 418 208 HOH HOH . D 4 HOH B 158 419 209 HOH HOH . D 4 HOH B 159 420 210 HOH HOH . D 4 HOH B 160 421 211 HOH HOH . D 4 HOH B 161 422 212 HOH HOH . D 4 HOH B 162 423 213 HOH HOH . D 4 HOH B 163 424 214 HOH HOH . D 4 HOH B 164 425 215 HOH HOH . D 4 HOH B 165 426 216 HOH HOH . D 4 HOH B 166 427 217 HOH HOH . D 4 HOH B 167 428 218 HOH HOH . D 4 HOH B 168 429 219 HOH HOH . D 4 HOH B 169 430 220 HOH HOH . D 4 HOH B 170 431 222 HOH HOH . D 4 HOH B 171 432 223 HOH HOH . D 4 HOH B 172 433 224 HOH HOH . D 4 HOH B 173 434 225 HOH HOH . D 4 HOH B 174 435 226 HOH HOH . D 4 HOH B 175 436 227 HOH HOH . D 4 HOH B 176 437 228 HOH HOH . D 4 HOH B 177 438 229 HOH HOH . D 4 HOH B 178 439 230 HOH HOH . D 4 HOH B 179 440 231 HOH HOH . D 4 HOH B 180 441 232 HOH HOH . D 4 HOH B 181 442 233 HOH HOH . D 4 HOH B 182 443 234 HOH HOH . D 4 HOH B 183 444 235 HOH HOH . D 4 HOH B 184 445 236 HOH HOH . D 4 HOH B 185 446 237 HOH HOH . D 4 HOH B 186 447 238 HOH HOH . D 4 HOH B 187 448 239 HOH HOH . D 4 HOH B 188 449 240 HOH HOH . D 4 HOH B 189 450 242 HOH HOH . D 4 HOH B 190 451 244 HOH HOH . D 4 HOH B 191 452 245 HOH HOH . D 4 HOH B 192 453 246 HOH HOH . D 4 HOH B 193 454 247 HOH HOH . D 4 HOH B 194 455 248 HOH HOH . D 4 HOH B 195 456 249 HOH HOH . D 4 HOH B 196 457 250 HOH HOH . D 4 HOH B 197 458 252 HOH HOH . D 4 HOH B 198 459 253 HOH HOH . D 4 HOH B 199 460 255 HOH HOH . D 4 HOH B 200 461 256 HOH HOH . D 4 HOH B 201 462 257 HOH HOH . D 4 HOH B 202 463 258 HOH HOH . D 4 HOH B 203 464 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S RYX . . . C 3 15.32 -0.061 16.956 1 14.5 ? S RYX 1 B 1 HETATM 2 N N' RYX . . . C 3 18.674 4.834 13.641 1 22.82 ? N' RYX 1 B 1 HETATM 3 O O' RYX . . . C 3 16.634 5.716 13.755 1 19.71 ? O' RYX 1 B 1 HETATM 4 C C1 RYX . . . C 3 16.845 3.621 14.775 1 16.6 ? C1 RYX 1 B 1 HETATM 5 C C2 RYX . . . C 3 17.292 1.432 15.844 1 15.91 ? C2 RYX 1 B 1 HETATM 6 C C3 RYX . . . C 3 17.704 2.555 15.123 1 16.78 ? C3 RYX 1 B 1 HETATM 7 C C4 RYX . . . C 3 15.909 1.288 16.14 1 14.88 ? C4 RYX 1 B 1 HETATM 8 C C5 RYX . . . C 3 15.479 3.54 15.077 1 17.22 ? C5 RYX 1 B 1 HETATM 9 C C6 RYX . . . C 3 15.058 2.356 15.701 1 17.07 ? C6 RYX 1 B 1 HETATM 10 C C7 RYX . . . C 3 17.392 4.796 14.035 1 19.68 ? C7 RYX 1 B 1 HETATM 11 F "F2'1" RYX . . . C 3 21.221 5.912 13.406 1 32.77 ? "F2'1" RYX 1 B 1 HETATM 12 F "F3'1" RYX . . . C 3 20.344 8.391 12.528 1 41.99 ? "F3'1" RYX 1 B 1 HETATM 13 F "F2'2" RYX . . . C 3 19.911 6.473 15.197 1 38.08 ? "F2'2" RYX 1 B 1 HETATM 14 F "F3'2" RYX . . . C 3 20.879 8.716 14.669 1 41.7 ? "F3'2" RYX 1 B 1 HETATM 15 F "F3'3" RYX . . . C 3 18.856 8.127 14.326 1 41.47 ? "F3'3" RYX 1 B 1 HETATM 16 C C1' RYX . . . C 3 19.16 5.971 12.898 1 29.57 ? C1' RYX 1 B 1 HETATM 17 O O1S RYX . . . C 3 13.865 0.045 16.831 1 14.52 ? O1S RYX 1 B 1 HETATM 18 C C2' RYX . . . C 3 20.168 6.578 13.878 1 35.28 ? C2' RYX 1 B 1 HETATM 19 O O2S RYX . . . C 3 15.839 0.018 18.289 1 15.1 ? O2S RYX 1 B 1 HETATM 20 C C3' RYX . . . C 3 20.087 8.065 13.813 1 38.7 ? C3' RYX 1 B 1 HETATM 21 N N3S RYX . . . C 3 15.941 -1.324 16.223 1 12.38 ? N3S RYX 1 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #