data_3RZ1 # _model_server_result.job_id d40SsWUklkOC_Dql_P5seQ _model_server_result.datetime_utc '2024-11-21 22:58:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":263}' # _entry.id 3RZ1 # _exptl.entry_id 3RZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.66 _cell.angle_gamma 90 _cell.entry_id 3RZ1 _cell.length_a 42.275 _cell.length_b 41.682 _cell.length_c 72.334 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C N3S RZ1 . B RZ1 1 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc2 A NE2 HIS 93 B HIS 94 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 A NE2 HIS 95 B HIS 96 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A ND1 HIS 118 B HIS 119 1_555 B ZN ZN . B ZN 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3RZ1 _atom_sites.fract_transf_matrix[1][1] 0.023655 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006189 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN B 1 262 262 ZN ZN . C 3 RZ1 B 1 1 1 RZ1 RZ1 . D 4 DMS B 1 263 1 DMS DMS . E 5 HOH B 1 126 126 HOH HOH . E 5 HOH B 2 264 264 HOH HOH . E 5 HOH B 3 265 265 HOH HOH . E 5 HOH B 4 266 266 HOH HOH . E 5 HOH B 5 267 267 HOH HOH . E 5 HOH B 6 268 268 HOH HOH . E 5 HOH B 7 269 269 HOH HOH . E 5 HOH B 8 270 270 HOH HOH . E 5 HOH B 9 271 271 HOH HOH . E 5 HOH B 10 272 272 HOH HOH . E 5 HOH B 11 273 273 HOH HOH . E 5 HOH B 12 274 274 HOH HOH . E 5 HOH B 13 275 275 HOH HOH . E 5 HOH B 14 276 276 HOH HOH . E 5 HOH B 15 277 277 HOH HOH . E 5 HOH B 16 278 278 HOH HOH . E 5 HOH B 17 279 279 HOH HOH . E 5 HOH B 18 280 1 HOH HOH . E 5 HOH B 19 281 2 HOH HOH . E 5 HOH B 20 282 3 HOH HOH . E 5 HOH B 21 283 4 HOH HOH . E 5 HOH B 22 284 5 HOH HOH . E 5 HOH B 23 285 6 HOH HOH . E 5 HOH B 24 286 7 HOH HOH . E 5 HOH B 25 287 8 HOH HOH . E 5 HOH B 26 288 9 HOH HOH . E 5 HOH B 27 289 10 HOH HOH . E 5 HOH B 28 290 11 HOH HOH . E 5 HOH B 29 291 12 HOH HOH . E 5 HOH B 30 292 13 HOH HOH . E 5 HOH B 31 293 14 HOH HOH . E 5 HOH B 32 294 15 HOH HOH . E 5 HOH B 33 295 16 HOH HOH . E 5 HOH B 34 296 17 HOH HOH . E 5 HOH B 35 297 18 HOH HOH . E 5 HOH B 36 298 19 HOH HOH . E 5 HOH B 37 299 20 HOH HOH . E 5 HOH B 38 300 21 HOH HOH . E 5 HOH B 39 301 22 HOH HOH . E 5 HOH B 40 302 23 HOH HOH . E 5 HOH B 41 303 24 HOH HOH . E 5 HOH B 42 304 25 HOH HOH . E 5 HOH B 43 305 26 HOH HOH . E 5 HOH B 44 306 27 HOH HOH . E 5 HOH B 45 307 28 HOH HOH . E 5 HOH B 46 308 29 HOH HOH . E 5 HOH B 47 309 30 HOH HOH . E 5 HOH B 48 310 31 HOH HOH . E 5 HOH B 49 311 32 HOH HOH . E 5 HOH B 50 312 33 HOH HOH . E 5 HOH B 51 313 34 HOH HOH . E 5 HOH B 52 314 35 HOH HOH . E 5 HOH B 53 315 36 HOH HOH . E 5 HOH B 54 316 37 HOH HOH . E 5 HOH B 55 317 38 HOH HOH . E 5 HOH B 56 318 39 HOH HOH . E 5 HOH B 57 319 40 HOH HOH . E 5 HOH B 58 320 41 HOH HOH . E 5 HOH B 59 321 42 HOH HOH . E 5 HOH B 60 322 43 HOH HOH . E 5 HOH B 61 323 44 HOH HOH . E 5 HOH B 62 324 45 HOH HOH . E 5 HOH B 63 325 46 HOH HOH . E 5 HOH B 64 326 47 HOH HOH . E 5 HOH B 65 327 48 HOH HOH . E 5 HOH B 66 328 49 HOH HOH . E 5 HOH B 67 329 50 HOH HOH . E 5 HOH B 68 330 51 HOH HOH . E 5 HOH B 69 331 52 HOH HOH . E 5 HOH B 70 332 53 HOH HOH . E 5 HOH B 71 333 54 HOH HOH . E 5 HOH B 72 334 55 HOH HOH . E 5 HOH B 73 335 56 HOH HOH . E 5 HOH B 74 336 57 HOH HOH . E 5 HOH B 75 337 58 HOH HOH . E 5 HOH B 76 338 59 HOH HOH . E 5 HOH B 77 339 60 HOH HOH . E 5 HOH B 78 340 61 HOH HOH . E 5 HOH B 79 341 62 HOH HOH . E 5 HOH B 80 342 63 HOH HOH . E 5 HOH B 81 343 64 HOH HOH . E 5 HOH B 82 344 65 HOH HOH . E 5 HOH B 83 345 66 HOH HOH . E 5 HOH B 84 346 67 HOH HOH . E 5 HOH B 85 347 68 HOH HOH . E 5 HOH B 86 348 69 HOH HOH . E 5 HOH B 87 349 70 HOH HOH . E 5 HOH B 88 350 71 HOH HOH . E 5 HOH B 89 351 72 HOH HOH . E 5 HOH B 90 352 73 HOH HOH . E 5 HOH B 91 353 74 HOH HOH . E 5 HOH B 92 354 75 HOH HOH . E 5 HOH B 93 355 76 HOH HOH . E 5 HOH B 94 356 77 HOH HOH . E 5 HOH B 95 357 78 HOH HOH . E 5 HOH B 96 358 79 HOH HOH . E 5 HOH B 97 359 80 HOH HOH . E 5 HOH B 98 360 81 HOH HOH . E 5 HOH B 99 361 82 HOH HOH . E 5 HOH B 100 362 83 HOH HOH . E 5 HOH B 101 363 84 HOH HOH . E 5 HOH B 102 364 85 HOH HOH . E 5 HOH B 103 365 86 HOH HOH . E 5 HOH B 104 366 87 HOH HOH . E 5 HOH B 105 367 88 HOH HOH . E 5 HOH B 106 368 89 HOH HOH . E 5 HOH B 107 369 90 HOH HOH . E 5 HOH B 108 370 91 HOH HOH . E 5 HOH B 109 371 92 HOH HOH . E 5 HOH B 110 372 93 HOH HOH . E 5 HOH B 111 373 94 HOH HOH . E 5 HOH B 112 374 95 HOH HOH . E 5 HOH B 113 375 96 HOH HOH . E 5 HOH B 114 376 97 HOH HOH . E 5 HOH B 115 377 98 HOH HOH . E 5 HOH B 116 378 99 HOH HOH . E 5 HOH B 117 379 100 HOH HOH . E 5 HOH B 118 380 101 HOH HOH . E 5 HOH B 119 381 102 HOH HOH . E 5 HOH B 120 382 103 HOH HOH . E 5 HOH B 121 383 104 HOH HOH . E 5 HOH B 122 384 105 HOH HOH . E 5 HOH B 123 385 106 HOH HOH . E 5 HOH B 124 386 108 HOH HOH . E 5 HOH B 125 387 109 HOH HOH . E 5 HOH B 126 388 110 HOH HOH . E 5 HOH B 127 389 111 HOH HOH . E 5 HOH B 128 390 112 HOH HOH . E 5 HOH B 129 391 113 HOH HOH . E 5 HOH B 130 392 114 HOH HOH . E 5 HOH B 131 393 115 HOH HOH . E 5 HOH B 132 394 119 HOH HOH . E 5 HOH B 133 395 120 HOH HOH . E 5 HOH B 134 396 121 HOH HOH . E 5 HOH B 135 397 122 HOH HOH . E 5 HOH B 136 398 123 HOH HOH . E 5 HOH B 137 399 124 HOH HOH . E 5 HOH B 138 400 125 HOH HOH . E 5 HOH B 139 401 127 HOH HOH . E 5 HOH B 140 402 128 HOH HOH . E 5 HOH B 141 403 129 HOH HOH . E 5 HOH B 142 404 130 HOH HOH . E 5 HOH B 143 405 131 HOH HOH . E 5 HOH B 144 406 132 HOH HOH . E 5 HOH B 145 407 133 HOH HOH . E 5 HOH B 146 408 134 HOH HOH . E 5 HOH B 147 409 135 HOH HOH . E 5 HOH B 148 410 136 HOH HOH . E 5 HOH B 149 411 137 HOH HOH . E 5 HOH B 150 412 138 HOH HOH . E 5 HOH B 151 413 139 HOH HOH . E 5 HOH B 152 414 140 HOH HOH . E 5 HOH B 153 415 141 HOH HOH . E 5 HOH B 154 416 142 HOH HOH . E 5 HOH B 155 417 143 HOH HOH . E 5 HOH B 156 418 144 HOH HOH . E 5 HOH B 157 419 145 HOH HOH . E 5 HOH B 158 420 146 HOH HOH . E 5 HOH B 159 421 147 HOH HOH . E 5 HOH B 160 422 148 HOH HOH . E 5 HOH B 161 423 149 HOH HOH . E 5 HOH B 162 424 150 HOH HOH . E 5 HOH B 163 425 151 HOH HOH . E 5 HOH B 164 426 152 HOH HOH . E 5 HOH B 165 427 153 HOH HOH . E 5 HOH B 166 428 154 HOH HOH . E 5 HOH B 167 429 155 HOH HOH . E 5 HOH B 168 430 156 HOH HOH . E 5 HOH B 169 431 157 HOH HOH . E 5 HOH B 170 432 158 HOH HOH . E 5 HOH B 171 433 159 HOH HOH . E 5 HOH B 172 434 160 HOH HOH . E 5 HOH B 173 435 161 HOH HOH . E 5 HOH B 174 436 162 HOH HOH . E 5 HOH B 175 437 163 HOH HOH . E 5 HOH B 176 438 164 HOH HOH . E 5 HOH B 177 439 165 HOH HOH . E 5 HOH B 178 440 166 HOH HOH . E 5 HOH B 179 441 167 HOH HOH . E 5 HOH B 180 442 168 HOH HOH . E 5 HOH B 181 443 169 HOH HOH . E 5 HOH B 182 444 170 HOH HOH . E 5 HOH B 183 445 171 HOH HOH . E 5 HOH B 184 446 172 HOH HOH . E 5 HOH B 185 447 173 HOH HOH . E 5 HOH B 186 448 174 HOH HOH . E 5 HOH B 187 449 175 HOH HOH . E 5 HOH B 188 450 176 HOH HOH . E 5 HOH B 189 451 177 HOH HOH . E 5 HOH B 190 452 178 HOH HOH . E 5 HOH B 191 453 179 HOH HOH . E 5 HOH B 192 454 180 HOH HOH . E 5 HOH B 193 455 181 HOH HOH . E 5 HOH B 194 456 182 HOH HOH . E 5 HOH B 195 457 183 HOH HOH . E 5 HOH B 196 458 184 HOH HOH . E 5 HOH B 197 459 185 HOH HOH . E 5 HOH B 198 460 186 HOH HOH . E 5 HOH B 199 461 187 HOH HOH . E 5 HOH B 200 462 188 HOH HOH . E 5 HOH B 201 463 189 HOH HOH . E 5 HOH B 202 464 190 HOH HOH . E 5 HOH B 203 465 191 HOH HOH . E 5 HOH B 204 466 192 HOH HOH . E 5 HOH B 205 467 193 HOH HOH . E 5 HOH B 206 468 194 HOH HOH . E 5 HOH B 207 469 195 HOH HOH . E 5 HOH B 208 470 196 HOH HOH . E 5 HOH B 209 471 197 HOH HOH . E 5 HOH B 210 472 198 HOH HOH . E 5 HOH B 211 473 199 HOH HOH . E 5 HOH B 212 474 200 HOH HOH . E 5 HOH B 213 475 201 HOH HOH . E 5 HOH B 214 476 202 HOH HOH . E 5 HOH B 215 477 203 HOH HOH . E 5 HOH B 216 478 204 HOH HOH . E 5 HOH B 217 479 205 HOH HOH . E 5 HOH B 218 480 206 HOH HOH . E 5 HOH B 219 481 207 HOH HOH . E 5 HOH B 220 482 208 HOH HOH . E 5 HOH B 221 483 209 HOH HOH . E 5 HOH B 222 484 210 HOH HOH . E 5 HOH B 223 485 211 HOH HOH . E 5 HOH B 224 486 212 HOH HOH . E 5 HOH B 225 487 213 HOH HOH . E 5 HOH B 226 488 214 HOH HOH . E 5 HOH B 227 489 215 HOH HOH . E 5 HOH B 228 490 216 HOH HOH . E 5 HOH B 229 491 217 HOH HOH . E 5 HOH B 230 492 218 HOH HOH . E 5 HOH B 231 493 219 HOH HOH . E 5 HOH B 232 494 220 HOH HOH . E 5 HOH B 233 495 221 HOH HOH . E 5 HOH B 234 496 222 HOH HOH . E 5 HOH B 235 497 223 HOH HOH . E 5 HOH B 236 498 224 HOH HOH . E 5 HOH B 237 499 225 HOH HOH . E 5 HOH B 238 500 226 HOH HOH . E 5 HOH B 239 501 228 HOH HOH . E 5 HOH B 240 502 229 HOH HOH . E 5 HOH B 241 503 230 HOH HOH . E 5 HOH B 242 504 231 HOH HOH . E 5 HOH B 243 505 232 HOH HOH . E 5 HOH B 244 506 233 HOH HOH . E 5 HOH B 245 507 234 HOH HOH . E 5 HOH B 246 508 236 HOH HOH . E 5 HOH B 247 509 237 HOH HOH . E 5 HOH B 248 510 238 HOH HOH . E 5 HOH B 249 511 239 HOH HOH . E 5 HOH B 250 512 241 HOH HOH . E 5 HOH B 251 513 242 HOH HOH . E 5 HOH B 252 514 243 HOH HOH . E 5 HOH B 253 515 244 HOH HOH . E 5 HOH B 254 516 245 HOH HOH . E 5 HOH B 255 517 246 HOH HOH . E 5 HOH B 256 518 247 HOH HOH . E 5 HOH B 257 519 248 HOH HOH . E 5 HOH B 258 520 249 HOH HOH . E 5 HOH B 259 521 250 HOH HOH . E 5 HOH B 260 522 251 HOH HOH . E 5 HOH B 261 523 252 HOH HOH . E 5 HOH B 262 524 253 HOH HOH . E 5 HOH B 263 525 254 HOH HOH . E 5 HOH B 264 526 255 HOH HOH . E 5 HOH B 265 527 256 HOH HOH . E 5 HOH B 266 528 257 HOH HOH . E 5 HOH B 267 529 258 HOH HOH . E 5 HOH B 268 530 259 HOH HOH . E 5 HOH B 269 531 260 HOH HOH . E 5 HOH B 270 532 261 HOH HOH . E 5 HOH B 271 533 262 HOH HOH . E 5 HOH B 272 534 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 22.764 -11.243 14.822 0.5 38.56 ? S DMS 263 B 1 HETATM 2 O O DMS . . . D 4 21.063 -10.928 14.377 0.5 39.93 ? O DMS 263 B 1 HETATM 3 C C1 DMS . . . D 4 22.798 -11.139 16.627 0.5 35.4 ? C1 DMS 263 B 1 HETATM 4 C C2 DMS . . . D 4 23.172 -12.998 14.592 0.5 39.68 ? C2 DMS 263 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #