data_3RZ3 # _model_server_result.job_id 1dL2XDVAvOfgI_VHVeD28g _model_server_result.datetime_utc '2025-01-12 15:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3RZ3 # _exptl.entry_id 3RZ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 442.29 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RZ3 _cell.length_a 121.797 _cell.length_b 139.525 _cell.length_c 216.059 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 92 _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 93 _struct_conn.ptnr2_symmetry 14_445 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.99 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H21 Cl2 N O6' _chem_comp.formula_weight 442.29 _chem_comp.id U94 _chem_comp.mon_nstd_flag . _chem_comp.name "4,5-dideoxy-5-(3',5'-dichlorobiphenyl-4-yl)-4-[(methoxyacetyl)amino]-L-arabinonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O1 U94 sing 358 n n O1 HO1 U94 sing 359 n n C3 C2 U94 sing 360 n n C2 O4 U94 doub 361 n n O8 C3 U94 sing 362 n n C3 C5 U94 sing 363 n n C3 H3 U94 sing 364 n n O9 C5 U94 sing 365 n n C5 C6 U94 sing 366 n n C5 H5 U94 sing 367 n n C7 C6 U94 sing 368 n n C6 N10 U94 sing 369 n n C6 H6 U94 sing 370 n n C7 C16 U94 sing 371 n n C7 H7 U94 sing 372 n n C7 H7A U94 sing 373 n n O8 HO8 U94 sing 374 n n O9 HO9 U94 sing 375 n n N10 C11 U94 sing 376 n n N10 HN10 U94 sing 377 n n O12 C11 U94 doub 378 n n C11 C13 U94 sing 379 n n C13 O14 U94 sing 380 n n C13 H13 U94 sing 381 n n C13 H13A U94 sing 382 n n C15 O14 U94 sing 383 n n C15 H15 U94 sing 384 n n C15 H15A U94 sing 385 n n C15 H15B U94 sing 386 n n C17 C16 U94 doub 387 n y C16 C21 U94 sing 388 n y C18 C17 U94 sing 389 n y C17 H17 U94 sing 390 n n C18 C19 U94 doub 391 n y C18 H18 U94 sing 392 n n C22 C19 U94 sing 393 n y C19 C20 U94 sing 394 n y C20 C21 U94 doub 395 n y C20 H20 U94 sing 396 n n C21 H21 U94 sing 397 n n C23 C22 U94 doub 398 n y C22 C27 U94 sing 399 n y C24 C23 U94 sing 400 n y C23 H23 U94 sing 401 n n CL29 C24 U94 sing 402 n n C24 C25 U94 doub 403 n y C25 C26 U94 sing 404 n y C25 H25 U94 sing 405 n n C26 C27 U94 doub 406 n y C26 CL28 U94 sing 407 n n C27 H27 U94 sing 408 n n # _atom_sites.entry_id 3RZ3 _atom_sites.fract_transf_matrix[1][1] 0.00821 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 U94 A 1 1 1 U94 U94 . F 2 U94 B 1 1 1 U94 U94 . G 2 U94 C 1 1 1 U94 U94 . H 2 U94 D 1 1 1 U94 U94 . I 3 HOH A 1 185 1 HOH HOH . I 3 HOH A 2 186 2 HOH HOH . I 3 HOH A 3 187 3 HOH HOH . I 3 HOH A 4 188 4 HOH HOH . I 3 HOH A 5 189 5 HOH HOH . I 3 HOH A 6 190 6 HOH HOH . I 3 HOH A 7 191 7 HOH HOH . I 3 HOH A 8 192 8 HOH HOH . I 3 HOH A 9 193 9 HOH HOH . I 3 HOH A 10 194 10 HOH HOH . I 3 HOH A 11 195 11 HOH HOH . I 3 HOH A 12 196 12 HOH HOH . I 3 HOH A 13 197 13 HOH HOH . I 3 HOH A 14 198 14 HOH HOH . I 3 HOH A 15 199 15 HOH HOH . I 3 HOH A 16 200 16 HOH HOH . I 3 HOH A 17 201 17 HOH HOH . I 3 HOH A 18 202 18 HOH HOH . I 3 HOH A 19 203 21 HOH HOH . I 3 HOH A 20 204 22 HOH HOH . I 3 HOH A 21 205 23 HOH HOH . J 3 HOH B 1 185 24 HOH HOH . J 3 HOH B 2 186 25 HOH HOH . J 3 HOH B 3 187 27 HOH HOH . J 3 HOH B 4 188 28 HOH HOH . J 3 HOH B 5 189 29 HOH HOH . J 3 HOH B 6 190 30 HOH HOH . J 3 HOH B 7 191 31 HOH HOH . J 3 HOH B 8 192 32 HOH HOH . J 3 HOH B 9 193 33 HOH HOH . J 3 HOH B 10 194 34 HOH HOH . J 3 HOH B 11 195 35 HOH HOH . J 3 HOH B 12 196 36 HOH HOH . J 3 HOH B 13 197 37 HOH HOH . J 3 HOH B 14 198 38 HOH HOH . J 3 HOH B 15 199 39 HOH HOH . J 3 HOH B 16 200 40 HOH HOH . J 3 HOH B 17 201 41 HOH HOH . J 3 HOH B 18 202 42 HOH HOH . J 3 HOH B 19 203 43 HOH HOH . J 3 HOH B 20 204 44 HOH HOH . J 3 HOH B 21 205 45 HOH HOH . K 3 HOH C 1 185 19 HOH HOH . K 3 HOH C 2 186 20 HOH HOH . K 3 HOH C 3 187 46 HOH HOH . K 3 HOH C 4 188 47 HOH HOH . K 3 HOH C 5 189 48 HOH HOH . K 3 HOH C 6 190 49 HOH HOH . K 3 HOH C 7 191 50 HOH HOH . K 3 HOH C 8 192 51 HOH HOH . K 3 HOH C 9 193 52 HOH HOH . K 3 HOH C 10 194 53 HOH HOH . K 3 HOH C 11 195 54 HOH HOH . K 3 HOH C 12 196 55 HOH HOH . K 3 HOH C 13 197 56 HOH HOH . K 3 HOH C 14 198 57 HOH HOH . K 3 HOH C 15 199 58 HOH HOH . K 3 HOH C 16 200 59 HOH HOH . K 3 HOH C 17 201 60 HOH HOH . L 3 HOH D 1 185 26 HOH HOH . L 3 HOH D 2 186 61 HOH HOH . L 3 HOH D 3 187 62 HOH HOH . L 3 HOH D 4 188 63 HOH HOH . L 3 HOH D 5 189 64 HOH HOH . L 3 HOH D 6 190 65 HOH HOH . L 3 HOH D 7 191 66 HOH HOH . L 3 HOH D 8 192 67 HOH HOH . L 3 HOH D 9 193 68 HOH HOH . L 3 HOH D 10 194 69 HOH HOH . L 3 HOH D 11 195 70 HOH HOH . L 3 HOH D 12 196 71 HOH HOH . L 3 HOH D 13 197 72 HOH HOH . L 3 HOH D 14 198 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 U94 . . . E 2 -3.806 -38.013 -22.057 1 72.96 ? O1 U94 1 A 1 HETATM 2 C C2 U94 . . . E 2 -3.355 -36.819 -22.116 1 73.56 ? C2 U94 1 A 1 HETATM 3 C C3 U94 . . . E 2 -3.998 -35.763 -23.125 1 70.78 ? C3 U94 1 A 1 HETATM 4 O O4 U94 . . . E 2 -2.386 -36.383 -21.426 1 74.73 ? O4 U94 1 A 1 HETATM 5 C C5 U94 . . . E 2 -4.371 -36.322 -24.5 1 65.64 ? C5 U94 1 A 1 HETATM 6 C C6 U94 . . . E 2 -3.246 -36.225 -25.564 1 59.64 ? C6 U94 1 A 1 HETATM 7 C C7 U94 . . . E 2 -2.388 -34.958 -25.545 1 57.63 ? C7 U94 1 A 1 HETATM 8 O O8 U94 . . . E 2 -5.158 -35.046 -22.627 1 73.25 ? O8 U94 1 A 1 HETATM 9 O O9 U94 . . . E 2 -5.561 -35.688 -24.946 1 68.07 ? O9 U94 1 A 1 HETATM 10 N N10 U94 . . . E 2 -3.774 -36.211 -26.892 1 53.17 ? N10 U94 1 A 1 HETATM 11 C C11 U94 . . . E 2 -3.839 -37.213 -27.754 1 53.61 ? C11 U94 1 A 1 HETATM 12 O O12 U94 . . . E 2 -3.623 -38.401 -27.559 1 52.81 ? O12 U94 1 A 1 HETATM 13 C C13 U94 . . . E 2 -4.34 -36.796 -29.1 1 54.62 ? C13 U94 1 A 1 HETATM 14 O O14 U94 . . . E 2 -4.336 -37.769 -30.028 1 54.76 ? O14 U94 1 A 1 HETATM 15 C C15 U94 . . . E 2 -5.194 -37.083 -30.866 1 57.17 ? C15 U94 1 A 1 HETATM 16 C C16 U94 . . . E 2 -0.974 -35.379 -25.969 1 57.19 ? C16 U94 1 A 1 HETATM 17 C C17 U94 . . . E 2 -0.138 -35.892 -24.999 1 54.77 ? C17 U94 1 A 1 HETATM 18 C C18 U94 . . . E 2 1.128 -36.276 -25.349 1 54.75 ? C18 U94 1 A 1 HETATM 19 C C19 U94 . . . E 2 1.565 -36.139 -26.642 1 53.31 ? C19 U94 1 A 1 HETATM 20 C C20 U94 . . . E 2 0.738 -35.628 -27.618 1 54.04 ? C20 U94 1 A 1 HETATM 21 C C21 U94 . . . E 2 -0.545 -35.257 -27.293 1 54.69 ? C21 U94 1 A 1 HETATM 22 C C22 U94 . . . E 2 2.828 -36.588 -26.923 1 54.12 ? C22 U94 1 A 1 HETATM 23 C C23 U94 . . . E 2 3.881 -36.365 -26.058 1 55.09 ? C23 U94 1 A 1 HETATM 24 C C24 U94 . . . E 2 5.143 -36.854 -26.355 1 56.86 ? C24 U94 1 A 1 HETATM 25 C C25 U94 . . . E 2 5.35 -37.599 -27.512 1 56.1 ? C25 U94 1 A 1 HETATM 26 C C26 U94 . . . E 2 4.283 -37.812 -28.369 1 53.99 ? C26 U94 1 A 1 HETATM 27 C C27 U94 . . . E 2 3.02 -37.325 -28.074 1 54 ? C27 U94 1 A 1 HETATM 28 CL CL28 U94 . . . E 2 4.524 -38.712 -29.801 1 49.27 ? CL28 U94 1 A 1 HETATM 29 CL CL29 U94 . . . E 2 6.461 -36.571 -25.285 1 60.54 ? CL29 U94 1 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #