data_3RZ8 # _model_server_result.job_id WKZZrpFAB4p4MfKA3Ale7w _model_server_result.datetime_utc '2024-10-19 16:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":263}' # _entry.id 3RZ8 # _exptl.entry_id 3RZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.56 _cell.angle_gamma 90 _cell.entry_id 3RZ8 _cell.length_a 42.218 _cell.length_b 41.539 _cell.length_c 72.183 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B ZN ZN . A ZN 1 1_555 A NE2 HIS 93 A HIS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 B ZN ZN . A ZN 1 1_555 A NE2 HIS 95 A HIS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 B ZN ZN . A ZN 1 1_555 A ND1 HIS 118 A HIS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc4 B ZN ZN . A ZN 1 1_555 C N3S RZ8 . A RZ8 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3RZ8 _atom_sites.fract_transf_matrix[1][1] 0.023687 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006152 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1 1 ZN ZN . C 3 RZ8 A 1 262 262 RZ8 RZ8 . D 4 DMS A 1 263 263 DMS DMS . E 5 HOH A 1 264 264 HOH HOH . E 5 HOH A 2 265 265 HOH HOH . E 5 HOH A 3 266 266 HOH HOH . E 5 HOH A 4 267 267 HOH HOH . E 5 HOH A 5 268 268 HOH HOH . E 5 HOH A 6 269 269 HOH HOH . E 5 HOH A 7 270 270 HOH HOH . E 5 HOH A 8 271 271 HOH HOH . E 5 HOH A 9 272 272 HOH HOH . E 5 HOH A 10 273 273 HOH HOH . E 5 HOH A 11 274 274 HOH HOH . E 5 HOH A 12 275 275 HOH HOH . E 5 HOH A 13 276 276 HOH HOH . E 5 HOH A 14 277 277 HOH HOH . E 5 HOH A 15 278 278 HOH HOH . E 5 HOH A 16 279 279 HOH HOH . E 5 HOH A 17 280 280 HOH HOH . E 5 HOH A 18 281 281 HOH HOH . E 5 HOH A 19 282 282 HOH HOH . E 5 HOH A 20 283 283 HOH HOH . E 5 HOH A 21 284 284 HOH HOH . E 5 HOH A 22 285 285 HOH HOH . E 5 HOH A 23 286 286 HOH HOH . E 5 HOH A 24 287 287 HOH HOH . E 5 HOH A 25 288 288 HOH HOH . E 5 HOH A 26 289 289 HOH HOH . E 5 HOH A 27 290 290 HOH HOH . E 5 HOH A 28 291 291 HOH HOH . E 5 HOH A 29 292 292 HOH HOH . E 5 HOH A 30 294 294 HOH HOH . E 5 HOH A 31 295 295 HOH HOH . E 5 HOH A 32 296 296 HOH HOH . E 5 HOH A 33 297 297 HOH HOH . E 5 HOH A 34 298 298 HOH HOH . E 5 HOH A 35 299 299 HOH HOH . E 5 HOH A 36 300 300 HOH HOH . E 5 HOH A 37 301 301 HOH HOH . E 5 HOH A 38 302 302 HOH HOH . E 5 HOH A 39 303 303 HOH HOH . E 5 HOH A 40 304 304 HOH HOH . E 5 HOH A 41 305 305 HOH HOH . E 5 HOH A 42 306 306 HOH HOH . E 5 HOH A 43 307 307 HOH HOH . E 5 HOH A 44 308 308 HOH HOH . E 5 HOH A 45 309 309 HOH HOH . E 5 HOH A 46 310 310 HOH HOH . E 5 HOH A 47 311 311 HOH HOH . E 5 HOH A 48 312 312 HOH HOH . E 5 HOH A 49 313 313 HOH HOH . E 5 HOH A 50 315 315 HOH HOH . E 5 HOH A 51 316 316 HOH HOH . E 5 HOH A 52 317 317 HOH HOH . E 5 HOH A 53 318 318 HOH HOH . E 5 HOH A 54 319 319 HOH HOH . E 5 HOH A 55 320 320 HOH HOH . E 5 HOH A 56 321 321 HOH HOH . E 5 HOH A 57 322 322 HOH HOH . E 5 HOH A 58 323 323 HOH HOH . E 5 HOH A 59 324 324 HOH HOH . E 5 HOH A 60 325 325 HOH HOH . E 5 HOH A 61 326 326 HOH HOH . E 5 HOH A 62 327 327 HOH HOH . E 5 HOH A 63 328 328 HOH HOH . E 5 HOH A 64 329 329 HOH HOH . E 5 HOH A 65 330 330 HOH HOH . E 5 HOH A 66 332 332 HOH HOH . E 5 HOH A 67 333 333 HOH HOH . E 5 HOH A 68 334 334 HOH HOH . E 5 HOH A 69 335 335 HOH HOH . E 5 HOH A 70 336 336 HOH HOH . E 5 HOH A 71 337 337 HOH HOH . E 5 HOH A 72 338 338 HOH HOH . E 5 HOH A 73 339 339 HOH HOH . E 5 HOH A 74 340 340 HOH HOH . E 5 HOH A 75 341 341 HOH HOH . E 5 HOH A 76 342 342 HOH HOH . E 5 HOH A 77 343 343 HOH HOH . E 5 HOH A 78 344 344 HOH HOH . E 5 HOH A 79 345 345 HOH HOH . E 5 HOH A 80 346 346 HOH HOH . E 5 HOH A 81 347 347 HOH HOH . E 5 HOH A 82 348 348 HOH HOH . E 5 HOH A 83 349 349 HOH HOH . E 5 HOH A 84 350 350 HOH HOH . E 5 HOH A 85 351 351 HOH HOH . E 5 HOH A 86 352 352 HOH HOH . E 5 HOH A 87 353 353 HOH HOH . E 5 HOH A 88 354 354 HOH HOH . E 5 HOH A 89 355 355 HOH HOH . E 5 HOH A 90 356 356 HOH HOH . E 5 HOH A 91 357 357 HOH HOH . E 5 HOH A 92 358 358 HOH HOH . E 5 HOH A 93 359 359 HOH HOH . E 5 HOH A 94 360 360 HOH HOH . E 5 HOH A 95 361 361 HOH HOH . E 5 HOH A 96 362 362 HOH HOH . E 5 HOH A 97 363 363 HOH HOH . E 5 HOH A 98 364 364 HOH HOH . E 5 HOH A 99 365 365 HOH HOH . E 5 HOH A 100 366 366 HOH HOH . E 5 HOH A 101 367 367 HOH HOH . E 5 HOH A 102 368 368 HOH HOH . E 5 HOH A 103 369 369 HOH HOH . E 5 HOH A 104 370 370 HOH HOH . E 5 HOH A 105 371 371 HOH HOH . E 5 HOH A 106 372 372 HOH HOH . E 5 HOH A 107 373 373 HOH HOH . E 5 HOH A 108 374 374 HOH HOH . E 5 HOH A 109 375 375 HOH HOH . E 5 HOH A 110 376 376 HOH HOH . E 5 HOH A 111 378 378 HOH HOH . E 5 HOH A 112 379 379 HOH HOH . E 5 HOH A 113 380 380 HOH HOH . E 5 HOH A 114 381 381 HOH HOH . E 5 HOH A 115 382 382 HOH HOH . E 5 HOH A 116 383 383 HOH HOH . E 5 HOH A 117 384 384 HOH HOH . E 5 HOH A 118 385 385 HOH HOH . E 5 HOH A 119 386 386 HOH HOH . E 5 HOH A 120 387 387 HOH HOH . E 5 HOH A 121 388 388 HOH HOH . E 5 HOH A 122 389 389 HOH HOH . E 5 HOH A 123 390 390 HOH HOH . E 5 HOH A 124 391 391 HOH HOH . E 5 HOH A 125 392 392 HOH HOH . E 5 HOH A 126 393 393 HOH HOH . E 5 HOH A 127 394 394 HOH HOH . E 5 HOH A 128 395 395 HOH HOH . E 5 HOH A 129 396 396 HOH HOH . E 5 HOH A 130 397 397 HOH HOH . E 5 HOH A 131 398 398 HOH HOH . E 5 HOH A 132 399 399 HOH HOH . E 5 HOH A 133 400 400 HOH HOH . E 5 HOH A 134 401 401 HOH HOH . E 5 HOH A 135 402 402 HOH HOH . E 5 HOH A 136 403 403 HOH HOH . E 5 HOH A 137 404 404 HOH HOH . E 5 HOH A 138 405 405 HOH HOH . E 5 HOH A 139 406 406 HOH HOH . E 5 HOH A 140 407 407 HOH HOH . E 5 HOH A 141 408 408 HOH HOH . E 5 HOH A 142 409 409 HOH HOH . E 5 HOH A 143 410 410 HOH HOH . E 5 HOH A 144 411 411 HOH HOH . E 5 HOH A 145 413 413 HOH HOH . E 5 HOH A 146 415 415 HOH HOH . E 5 HOH A 147 416 416 HOH HOH . E 5 HOH A 148 417 417 HOH HOH . E 5 HOH A 149 418 418 HOH HOH . E 5 HOH A 150 419 419 HOH HOH . E 5 HOH A 151 420 420 HOH HOH . E 5 HOH A 152 421 421 HOH HOH . E 5 HOH A 153 422 422 HOH HOH . E 5 HOH A 154 424 424 HOH HOH . E 5 HOH A 155 425 425 HOH HOH . E 5 HOH A 156 426 426 HOH HOH . E 5 HOH A 157 427 427 HOH HOH . E 5 HOH A 158 428 428 HOH HOH . E 5 HOH A 159 429 429 HOH HOH . E 5 HOH A 160 430 430 HOH HOH . E 5 HOH A 161 431 431 HOH HOH . E 5 HOH A 162 433 433 HOH HOH . E 5 HOH A 163 434 434 HOH HOH . E 5 HOH A 164 435 435 HOH HOH . E 5 HOH A 165 436 436 HOH HOH . E 5 HOH A 166 437 437 HOH HOH . E 5 HOH A 167 438 438 HOH HOH . E 5 HOH A 168 439 439 HOH HOH . E 5 HOH A 169 440 440 HOH HOH . E 5 HOH A 170 441 441 HOH HOH . E 5 HOH A 171 442 442 HOH HOH . E 5 HOH A 172 443 443 HOH HOH . E 5 HOH A 173 444 444 HOH HOH . E 5 HOH A 174 445 445 HOH HOH . E 5 HOH A 175 446 446 HOH HOH . E 5 HOH A 176 447 447 HOH HOH . E 5 HOH A 177 448 448 HOH HOH . E 5 HOH A 178 449 449 HOH HOH . E 5 HOH A 179 450 450 HOH HOH . E 5 HOH A 180 451 451 HOH HOH . E 5 HOH A 181 452 452 HOH HOH . E 5 HOH A 182 453 453 HOH HOH . E 5 HOH A 183 454 454 HOH HOH . E 5 HOH A 184 455 455 HOH HOH . E 5 HOH A 185 456 456 HOH HOH . E 5 HOH A 186 457 457 HOH HOH . E 5 HOH A 187 458 458 HOH HOH . E 5 HOH A 188 459 459 HOH HOH . E 5 HOH A 189 460 460 HOH HOH . E 5 HOH A 190 461 461 HOH HOH . E 5 HOH A 191 462 462 HOH HOH . E 5 HOH A 192 463 463 HOH HOH . E 5 HOH A 193 464 464 HOH HOH . E 5 HOH A 194 465 465 HOH HOH . E 5 HOH A 195 466 466 HOH HOH . E 5 HOH A 196 467 467 HOH HOH . E 5 HOH A 197 468 468 HOH HOH . E 5 HOH A 198 469 469 HOH HOH . E 5 HOH A 199 470 470 HOH HOH . E 5 HOH A 200 471 471 HOH HOH . E 5 HOH A 201 472 472 HOH HOH . E 5 HOH A 202 473 473 HOH HOH . E 5 HOH A 203 474 474 HOH HOH . E 5 HOH A 204 475 475 HOH HOH . E 5 HOH A 205 476 476 HOH HOH . E 5 HOH A 206 477 477 HOH HOH . E 5 HOH A 207 478 478 HOH HOH . E 5 HOH A 208 479 479 HOH HOH . E 5 HOH A 209 480 480 HOH HOH . E 5 HOH A 210 481 481 HOH HOH . E 5 HOH A 211 482 482 HOH HOH . E 5 HOH A 212 483 483 HOH HOH . E 5 HOH A 213 484 484 HOH HOH . E 5 HOH A 214 485 485 HOH HOH . E 5 HOH A 215 486 486 HOH HOH . E 5 HOH A 216 487 487 HOH HOH . E 5 HOH A 217 488 488 HOH HOH . E 5 HOH A 218 489 489 HOH HOH . E 5 HOH A 219 490 490 HOH HOH . E 5 HOH A 220 491 491 HOH HOH . E 5 HOH A 221 492 492 HOH HOH . E 5 HOH A 222 493 493 HOH HOH . E 5 HOH A 223 494 494 HOH HOH . E 5 HOH A 224 495 495 HOH HOH . E 5 HOH A 225 496 496 HOH HOH . E 5 HOH A 226 497 497 HOH HOH . E 5 HOH A 227 499 499 HOH HOH . E 5 HOH A 228 500 500 HOH HOH . E 5 HOH A 229 501 501 HOH HOH . E 5 HOH A 230 502 502 HOH HOH . E 5 HOH A 231 503 503 HOH HOH . E 5 HOH A 232 504 504 HOH HOH . E 5 HOH A 233 505 505 HOH HOH . E 5 HOH A 234 506 506 HOH HOH . E 5 HOH A 235 507 507 HOH HOH . E 5 HOH A 236 508 508 HOH HOH . E 5 HOH A 237 513 513 HOH HOH . E 5 HOH A 238 524 524 HOH HOH . E 5 HOH A 239 528 528 HOH HOH . E 5 HOH A 240 529 529 HOH HOH . E 5 HOH A 241 536 536 HOH HOH . E 5 HOH A 242 541 541 HOH HOH . E 5 HOH A 243 553 553 HOH HOH . E 5 HOH A 244 554 554 HOH HOH . E 5 HOH A 245 555 555 HOH HOH . E 5 HOH A 246 556 556 HOH HOH . E 5 HOH A 247 557 557 HOH HOH . E 5 HOH A 248 558 558 HOH HOH . E 5 HOH A 249 559 559 HOH HOH . E 5 HOH A 250 560 560 HOH HOH . E 5 HOH A 251 561 561 HOH HOH . E 5 HOH A 252 562 562 HOH HOH . E 5 HOH A 253 563 563 HOH HOH . E 5 HOH A 254 564 564 HOH HOH . E 5 HOH A 255 565 565 HOH HOH . E 5 HOH A 256 566 566 HOH HOH . E 5 HOH A 257 567 567 HOH HOH . E 5 HOH A 258 568 568 HOH HOH . E 5 HOH A 259 569 569 HOH HOH . E 5 HOH A 260 570 570 HOH HOH . E 5 HOH A 261 572 572 HOH HOH . E 5 HOH A 262 573 573 HOH HOH . E 5 HOH A 263 575 575 HOH HOH . E 5 HOH A 264 577 577 HOH HOH . E 5 HOH A 265 578 578 HOH HOH . E 5 HOH A 266 579 579 HOH HOH . E 5 HOH A 267 581 581 HOH HOH . E 5 HOH A 268 583 583 HOH HOH . E 5 HOH A 269 584 584 HOH HOH . E 5 HOH A 270 585 585 HOH HOH . E 5 HOH A 271 586 586 HOH HOH . E 5 HOH A 272 587 587 HOH HOH . E 5 HOH A 273 588 588 HOH HOH . E 5 HOH A 274 590 590 HOH HOH . E 5 HOH A 275 591 591 HOH HOH . E 5 HOH A 276 592 592 HOH HOH . E 5 HOH A 277 594 594 HOH HOH . E 5 HOH A 278 595 595 HOH HOH . E 5 HOH A 279 596 596 HOH HOH . E 5 HOH A 280 597 597 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 22.432 -11.606 14.998 1 35.45 ? S DMS 263 A 1 HETATM 2 O O DMS . . . D 4 23.431 -10.486 14.031 1 35.38 ? O DMS 263 A 1 HETATM 3 C C1 DMS . . . D 4 23.18 -13.254 14.725 1 34.61 ? C1 DMS 263 A 1 HETATM 4 C C2 DMS . . . D 4 22.767 -11.285 16.75 1 30.49 ? C2 DMS 263 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #