data_3RZE # _model_server_result.job_id BBpuzUhwosoLg7hbZj_8RQ _model_server_result.datetime_utc '2025-03-06 21:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1200}' # _entry.id 3RZE # _exptl.entry_id 3RZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.376 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3E)-3-(dibenzo[b,e]oxepin-11(6H)-ylidene)-N,N-dimethylpropan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RZE _cell.length_a 88.144 _cell.length_b 88.144 _cell.length_c 331.654 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 100 1_555 A SG CYS 161 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 399 A CYS 441 1_555 A SG CYS 402 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C19 H21 N O' _chem_comp.formula_weight 279.376 _chem_comp.id 5EH _chem_comp.mon_nstd_flag . _chem_comp.name (3E)-3-(dibenzo[b,e]oxepin-11(6H)-ylidene)-N,N-dimethylpropan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 N02 5EH sing 1 n n N02 C03 5EH sing 2 n n N02 C04 5EH sing 3 n n C04 C05 5EH sing 4 n n C05 C06 5EH sing 5 n n C06 C07 5EH doub 6 n n C07 C08 5EH sing 7 n n C07 C21 5EH sing 8 n n C08 C09 5EH doub 9 n y C08 C13 5EH sing 10 n y C09 C10 5EH sing 11 n y C10 C11 5EH doub 12 n y C11 C12 5EH sing 13 n y C12 C13 5EH doub 14 n y C13 C14 5EH sing 15 n n C14 O15 5EH sing 16 e n O15 C16 5EH sing 17 n n C16 C17 5EH doub 18 n y C16 C21 5EH sing 19 n y C17 C18 5EH sing 20 n y C18 C19 5EH doub 21 n y C19 C20 5EH sing 22 n y C20 C21 5EH doub 23 n y C01 H01 5EH sing 24 n n C01 H01A 5EH sing 25 n n C01 H01B 5EH sing 26 n n C03 H03 5EH sing 27 n n C03 H03A 5EH sing 28 n n C03 H03B 5EH sing 29 n n C04 H04 5EH sing 30 n n C04 H04A 5EH sing 31 n n C05 H05 5EH sing 32 n n C05 H05A 5EH sing 33 n n C06 H06 5EH sing 34 n n C09 H09 5EH sing 35 n n C10 H10 5EH sing 36 n n C11 H11 5EH sing 37 n n C12 H12 5EH sing 38 n n C14 H14 5EH sing 39 n n C14 H14A 5EH sing 40 n n C17 H17 5EH sing 41 n n C18 H18 5EH sing 42 n n C19 H19 5EH sing 43 n n C20 H20 5EH sing 44 n n # _atom_sites.entry_id 3RZE _atom_sites.fract_transf_matrix[1][1] 0.011345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5EH A 1 1200 1200 5EH 5EH . C 3 D7V A 1 1201 1201 D7V D7V . D 4 PO4 A 1 1202 1202 PO4 PO4 . E 4 PO4 A 1 1203 1203 PO4 PO4 . F 4 PO4 A 1 1204 1204 PO4 PO4 . G 5 OLC A 1 1205 1205 OLC OLC . H 6 HOH A 1 1206 1206 HOH HOH . H 6 HOH A 2 1207 1207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5EH . A . B 2 14.569 31.755 20.378 0.5 128.73 ? C01 5EH 1200 A 1 HETATM 2 N N02 5EH . A . B 2 14.525 32.943 19.512 0.5 135.7 ? N02 5EH 1200 A 1 HETATM 3 C C03 5EH . A . B 2 14.452 32.511 18.106 0.5 23.95 ? C03 5EH 1200 A 1 HETATM 4 C C04 5EH . A . B 2 15.73 33.765 19.724 0.5 108.61 ? C04 5EH 1200 A 1 HETATM 5 C C05 5EH . A . B 2 15.364 35.138 20.28 0.5 60.67 ? C05 5EH 1200 A 1 HETATM 6 C C06 5EH . A . B 2 15.773 35.211 21.734 0.5 113.33 ? C06 5EH 1200 A 1 HETATM 7 C C07 5EH . A . B 2 16.751 36.014 22.195 0.5 165.91 ? C07 5EH 1200 A 1 HETATM 8 C C08 5EH . A . B 2 17.526 36.943 21.311 0.5 153.27 ? C08 5EH 1200 A 1 HETATM 9 C C09 5EH . A . B 2 18.42 36.473 20.347 0.5 127.97 ? C09 5EH 1200 A 1 HETATM 10 C C10 5EH . A . B 2 19.149 37.384 19.58 0.5 131.79 ? C10 5EH 1200 A 1 HETATM 11 C C11 5EH . A . B 2 18.997 38.757 19.793 0.5 91.15 ? C11 5EH 1200 A 1 HETATM 12 C C12 5EH . A . B 2 18.119 39.218 20.775 0.5 77.62 ? C12 5EH 1200 A 1 HETATM 13 C C13 5EH . A . B 2 17.392 38.303 21.537 0.5 99.53 ? C13 5EH 1200 A 1 HETATM 14 C C14 5EH . A . B 2 16.426 38.762 22.605 0.5 29.88 ? C14 5EH 1200 A 1 HETATM 15 O O15 5EH . A . B 2 16.962 38.468 23.894 0.5 129.74 ? O15 5EH 1200 A 1 HETATM 16 C C16 5EH . A . B 2 17.176 37.205 24.405 0.5 141.6 ? C16 5EH 1200 A 1 HETATM 17 C C17 5EH . A . B 2 17.517 37.134 25.758 0.5 123.84 ? C17 5EH 1200 A 1 HETATM 18 C C18 5EH . A . B 2 17.77 35.908 26.373 0.5 140.03 ? C18 5EH 1200 A 1 HETATM 19 C C19 5EH . A . B 2 17.686 34.733 25.63 0.5 137.78 ? C19 5EH 1200 A 1 HETATM 20 C C20 5EH . A . B 2 17.35 34.796 24.279 0.5 113.47 ? C20 5EH 1200 A 1 HETATM 21 C C21 5EH . A . B 2 17.092 36.021 23.659 0.5 159.27 ? C21 5EH 1200 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #