data_3RZE # _model_server_result.job_id IHQUsG3uPL2MoFvWWrGaPg _model_server_result.datetime_utc '2024-11-15 04:56:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 3RZE # _exptl.entry_id 3RZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.376 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-3-(dibenzo[b,e]oxepin-11(6H)-ylidene)-N,N-dimethylpropan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RZE _cell.length_a 88.144 _cell.length_b 88.144 _cell.length_c 331.654 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 100 1_555 A SG CYS 161 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 399 A CYS 441 1_555 A SG CYS 402 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C19 H21 N O' _chem_comp.formula_weight 279.376 _chem_comp.id D7V _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-3-(dibenzo[b,e]oxepin-11(6H)-ylidene)-N,N-dimethylpropan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 D7V sing 127 n n N1 C2 D7V sing 128 n n N1 C3 D7V sing 129 n n O1 C13 D7V sing 130 n n O1 C14 D7V sing 131 n n C3 C4 D7V sing 132 n n C4 C5 D7V sing 133 n n C5 C6 D7V doub 134 n n C6 C7 D7V sing 135 n n C6 C15 D7V sing 136 n n C7 C8 D7V doub 137 n y C7 C12 D7V sing 138 n y C8 C9 D7V sing 139 n y C9 C10 D7V doub 140 n y C10 C11 D7V sing 141 n y C11 C12 D7V doub 142 n y C12 C13 D7V sing 143 n n C14 C15 D7V doub 144 z y C14 C16 D7V sing 145 n y C15 C19 D7V sing 146 n y C16 C17 D7V doub 147 n y C17 C18 D7V sing 148 n y C18 C19 D7V doub 149 n y C1 H1 D7V sing 150 n n C1 H1A D7V sing 151 n n C1 H1B D7V sing 152 n n C2 H2 D7V sing 153 n n C2 H2A D7V sing 154 n n C2 H2B D7V sing 155 n n C3 H3 D7V sing 156 n n C3 H3A D7V sing 157 n n C4 H4 D7V sing 158 n n C4 H4A D7V sing 159 n n C5 H5 D7V sing 160 n n C8 H8 D7V sing 161 n n C9 H9 D7V sing 162 n n C10 H10 D7V sing 163 n n C11 H11 D7V sing 164 n n C13 H13 D7V sing 165 n n C13 H13A D7V sing 166 n n C16 H16 D7V sing 167 n n C17 H17 D7V sing 168 n n C18 H18 D7V sing 169 n n C19 H19 D7V sing 170 n n # _atom_sites.entry_id 3RZE _atom_sites.fract_transf_matrix[1][1] 0.011345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5EH A 1 1200 1200 5EH 5EH . C 3 D7V A 1 1201 1201 D7V D7V . D 4 PO4 A 1 1202 1202 PO4 PO4 . E 4 PO4 A 1 1203 1203 PO4 PO4 . F 4 PO4 A 1 1204 1204 PO4 PO4 . G 5 OLC A 1 1205 1205 OLC OLC . H 6 HOH A 1 1206 1206 HOH HOH . H 6 HOH A 2 1207 1207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D7V . B . C 3 14.808 32.837 18.106 0.5 73.17 ? C1 D7V 1201 A 1 HETATM 2 N N1 D7V . B . C 3 14.677 33.217 19.522 0.5 134.26 ? N1 D7V 1201 A 1 HETATM 3 O O1 D7V . B . C 3 17.822 39.257 22.374 0.5 60.56 ? O1 D7V 1201 A 1 HETATM 4 C C2 D7V . B . C 3 14.643 32 20.349 0.5 132.98 ? C2 D7V 1201 A 1 HETATM 5 C C3 D7V . B . C 3 15.818 34.061 19.915 0.5 101.39 ? C3 D7V 1201 A 1 HETATM 6 C C4 D7V . B . C 3 15.343 35.458 20.304 0.5 63.13 ? C4 D7V 1201 A 1 HETATM 7 C C5 D7V . B . C 3 15.754 35.727 21.733 0.5 97.28 ? C5 D7V 1201 A 1 HETATM 8 C C6 D7V . B . C 3 16.832 36.44 22.115 0.5 159.2 ? C6 D7V 1201 A 1 HETATM 9 C C7 D7V . B . C 3 17.09 36.591 23.581 0.5 151.6 ? C7 D7V 1201 A 1 HETATM 10 C C8 D7V . B . C 3 17.401 35.486 24.375 0.5 133.41 ? C8 D7V 1201 A 1 HETATM 11 C C9 D7V . B . C 3 17.654 35.666 25.736 0.5 144.02 ? C9 D7V 1201 A 1 HETATM 12 C C10 D7V . B . C 3 17.597 36.946 26.291 0.5 124.82 ? C10 D7V 1201 A 1 HETATM 13 C C11 D7V . B . C 3 17.28 38.046 25.491 0.5 95.05 ? C11 D7V 1201 A 1 HETATM 14 C C12 D7V . B . C 3 17.027 37.857 24.132 0.5 118.35 ? C12 D7V 1201 A 1 HETATM 15 C C13 D7V . B . C 3 16.702 39.017 23.224 0.5 79.5 ? C13 D7V 1201 A 1 HETATM 16 C C14 D7V . B . C 3 18.247 38.425 21.362 0.5 105.7 ? C14 D7V 1201 A 1 HETATM 17 C C15 D7V . B . C 3 17.803 37.105 21.17 0.5 154.58 ? C15 D7V 1201 A 1 HETATM 18 C C16 D7V . B . C 3 19.189 38.972 20.486 0.5 61.44 ? C16 D7V 1201 A 1 HETATM 19 C C17 D7V . B . C 3 19.706 38.223 19.432 0.5 50.85 ? C17 D7V 1201 A 1 HETATM 20 C C18 D7V . B . C 3 19.279 36.91 19.253 0.5 146.65 ? C18 D7V 1201 A 1 HETATM 21 C C19 D7V . B . C 3 18.351 36.351 20.13 0.5 111.98 ? C19 D7V 1201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 907 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #