data_3RZH # _model_server_result.job_id aBExr08TRkyO9pBAOx45LA _model_server_result.datetime_utc '2024-12-01 06:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3RZH # _exptl.entry_id 3RZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description propane-1-thiol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RZH _cell.length_a 78.116 _cell.length_b 78.116 _cell.length_c 229.949 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D SG XL3 . A XL3 1 1_555 A SG CYS 117 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale2 D CA XL3 . A XL3 1 1_555 B N4 DC 9 B DC 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? covale ? covale3 B O3' DT 6 B DT 264 1_555 B P ME6 7 B ME6 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.593 ? covale ? covale4 B O3' ME6 7 B ME6 265 1_555 B P DA 8 B DA 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.587 ? hydrog WATSON-CRICK hydrog1 B N1 DG 3 B DG 261 1_555 C N3 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 3 B DG 261 1_555 C O2 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 3 B DG 261 1_555 C N4 DC 12 C DC 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 4 B DT 262 1_555 C N1 DA 11 C DA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 4 B DT 262 1_555 C N6 DA 11 C DA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 5 B DC 263 1_555 C N1 DG 10 C DG 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 5 B DC 263 1_555 C O6 DG 10 C DG 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 5 B DC 263 1_555 C N2 DG 10 C DG 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DT 6 B DT 264 1_555 C N1 DA 9 C DA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O4 DT 6 B DT 264 1_555 C N6 DA 9 C DA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DA 8 B DA 266 1_555 C N3 DT 7 C DT 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N6 DA 8 B DA 266 1_555 C O4 DT 7 C DT 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 9 B DC 267 1_555 C N1 DG 6 C DG 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 9 B DC 267 1_555 C O6 DG 6 C DG 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 9 B DC 267 1_555 C N2 DG 6 C DG 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 10 B DT 268 1_555 C N1 DA 5 C DA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 10 B DT 268 1_555 C N6 DA 5 C DA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 11 B DG 269 1_555 C N3 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 DG 11 B DG 269 1_555 C O2 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 DG 11 B DG 269 1_555 C N4 DC 4 C DC 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DC 12 B DC 270 1_555 C N1 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 DC 12 B DC 270 1_555 C O6 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 DC 12 B DC 270 1_555 C N2 DG 3 C DG 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 13 B DG 271 1_555 C N3 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 13 B DG 271 1_555 C O2 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 13 B DG 271 1_555 C N4 DC 2 C DC 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog27 B N4 DC 1 B DC 259 1_555 B O6 DG 13 B DG 271 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog28 B O6 DG 13 B DG 271 1_555 B N4 DC 1 B DC 259 8_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 S' _chem_comp.formula_weight 76.161 _chem_comp.id XL3 _chem_comp.mon_nstd_flag . _chem_comp.name propane-1-thiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB XL3 sing 564 n n CA HA XL3 sing 565 n n CA HAA XL3 sing 566 n n CA HAB XL3 sing 567 n n CC CB XL3 sing 568 n n CB HB XL3 sing 569 n n CB HBA XL3 sing 570 n n SG CC XL3 sing 571 n n CC HC XL3 sing 572 n n CC HCA XL3 sing 573 n n SG HSG XL3 sing 574 n n # _atom_sites.entry_id 3RZH _atom_sites.fract_transf_matrix[1][1] 0.012801 _atom_sites.fract_transf_matrix[1][2] 0.007391 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 XL3 A 1 1 1 XL3 XL3 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 6 6 HOH HOH . E 5 HOH A 6 7 7 HOH HOH . E 5 HOH A 7 8 8 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 11 11 HOH HOH . E 5 HOH A 11 12 12 HOH HOH . E 5 HOH A 12 13 13 HOH HOH . E 5 HOH A 13 14 14 HOH HOH . E 5 HOH A 14 15 15 HOH HOH . E 5 HOH A 15 16 16 HOH HOH . E 5 HOH A 16 17 17 HOH HOH . E 5 HOH A 17 18 18 HOH HOH . E 5 HOH A 18 19 19 HOH HOH . E 5 HOH A 19 20 20 HOH HOH . E 5 HOH A 20 21 21 HOH HOH . E 5 HOH A 21 23 23 HOH HOH . E 5 HOH A 22 24 24 HOH HOH . E 5 HOH A 23 25 25 HOH HOH . E 5 HOH A 24 26 26 HOH HOH . E 5 HOH A 25 27 27 HOH HOH . E 5 HOH A 26 28 28 HOH HOH . E 5 HOH A 27 29 29 HOH HOH . E 5 HOH A 28 30 30 HOH HOH . E 5 HOH A 29 31 31 HOH HOH . E 5 HOH A 30 33 33 HOH HOH . E 5 HOH A 31 34 34 HOH HOH . E 5 HOH A 32 35 35 HOH HOH . E 5 HOH A 33 36 36 HOH HOH . E 5 HOH A 34 37 37 HOH HOH . E 5 HOH A 35 38 38 HOH HOH . E 5 HOH A 36 39 39 HOH HOH . E 5 HOH A 37 40 40 HOH HOH . E 5 HOH A 38 41 41 HOH HOH . E 5 HOH A 39 42 42 HOH HOH . E 5 HOH A 40 43 43 HOH HOH . E 5 HOH A 41 44 44 HOH HOH . E 5 HOH A 42 45 45 HOH HOH . E 5 HOH A 43 46 46 HOH HOH . E 5 HOH A 44 47 47 HOH HOH . E 5 HOH A 45 48 48 HOH HOH . E 5 HOH A 46 49 49 HOH HOH . E 5 HOH A 47 50 50 HOH HOH . E 5 HOH A 48 51 51 HOH HOH . E 5 HOH A 49 52 52 HOH HOH . E 5 HOH A 50 262 1 HOH HOH . E 5 HOH A 51 263 54 HOH HOH . E 5 HOH A 52 264 58 HOH HOH . E 5 HOH A 53 265 59 HOH HOH . E 5 HOH A 54 266 60 HOH HOH . E 5 HOH A 55 267 61 HOH HOH . E 5 HOH A 56 268 62 HOH HOH . E 5 HOH A 57 269 63 HOH HOH . E 5 HOH A 58 270 66 HOH HOH . E 5 HOH A 59 271 67 HOH HOH . E 5 HOH A 60 272 68 HOH HOH . E 5 HOH A 61 273 70 HOH HOH . E 5 HOH A 62 274 71 HOH HOH . F 5 HOH B 1 22 22 HOH HOH . F 5 HOH B 2 32 32 HOH HOH . F 5 HOH B 3 55 55 HOH HOH . F 5 HOH B 4 56 56 HOH HOH . F 5 HOH B 5 64 64 HOH HOH . F 5 HOH B 6 65 65 HOH HOH . F 5 HOH B 7 69 69 HOH HOH . G 5 HOH C 1 53 53 HOH HOH . G 5 HOH C 2 57 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA XL3 . . . D 4 7.71 -14.604 -2.069 1 40.11 ? CA XL3 1 A 1 HETATM 2 C CB XL3 . . . D 4 8.181 -15.328 -0.812 1 40.55 ? CB XL3 1 A 1 HETATM 3 C CC XL3 . . . D 4 9.414 -16.156 -1.191 1 41.95 ? CC XL3 1 A 1 HETATM 4 S SG XL3 . . . D 4 8.924 -17.692 -2.059 1 39.89 ? SG XL3 1 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #