data_3S01 # _model_server_result.job_id zC32DrhZaNwBkn1S9R3PdQ _model_server_result.datetime_utc '2024-11-13 02:58:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 3S01 # _exptl.entry_id 3S01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.44 _cell.angle_gamma 90 _cell.entry_id 3S01 _cell.length_a 48.672 _cell.length_b 37.964 _cell.length_c 57.953 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 7 A LEU 381 1_555 A N MSE 8 A MSE 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale2 A C MSE 8 A MSE 382 1_555 A N VAL 9 A VAL 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C LYS 16 A LYS 390 1_555 A N MSE 17 A MSE 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C MSE 17 A MSE 391 1_555 A N ASN 18 A ASN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale5 A C PHE 37 A PHE 411 1_555 A N MSE 38 A MSE 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 A C MSE 38 A MSE 412 1_555 A N LYS 39 A LYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 A C ALA 45 A ALA 419 1_555 A N MSE 46 A MSE 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale8 A C MSE 46 A MSE 420 1_555 A N VAL 47 A VAL 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale9 A C GLU 48 A GLU 422 1_555 A N MSE 49 A MSE 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 49 A MSE 423 1_555 A N ALA 50 A ALA 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale11 A C PHE 66 A PHE 440 1_555 A N MSE 67 A MSE 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 A C MSE 67 A MSE 441 1_555 A N PHE 68 A PHE 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale13 A C LYS 71 A LYS 445 1_555 A N MSE 72 A MSE 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 A C MSE 72 A MSE 446 1_555 A N ASN 73 A ASN 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale15 A C ILE 82 A ILE 456 1_555 A N MSE 83 A MSE 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale16 A C MSE 83 A MSE 457 1_555 A N PRO 84 A PRO 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.37 ? covale ? covale17 A C GLN 189 A GLN 563 1_555 A N MSE 190 A MSE 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 A C MSE 190 A MSE 564 1_555 A N LYS 191 A LYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3S01 _atom_sites.fract_transf_matrix[1][1] 0.020546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 600 600 GOL GOL . C 3 IPA A 1 601 601 IPA IPA . D 3 IPA A 1 602 602 IPA IPA . E 4 HOH A 1 603 603 HOH HOH . E 4 HOH A 2 604 604 HOH HOH . E 4 HOH A 3 605 605 HOH HOH . E 4 HOH A 4 606 606 HOH HOH . E 4 HOH A 5 607 607 HOH HOH . E 4 HOH A 6 608 608 HOH HOH . E 4 HOH A 7 609 609 HOH HOH . E 4 HOH A 8 610 610 HOH HOH . E 4 HOH A 9 611 611 HOH HOH . E 4 HOH A 10 612 612 HOH HOH . E 4 HOH A 11 613 613 HOH HOH . E 4 HOH A 12 614 614 HOH HOH . E 4 HOH A 13 615 615 HOH HOH . E 4 HOH A 14 616 616 HOH HOH . E 4 HOH A 15 617 617 HOH HOH . E 4 HOH A 16 618 618 HOH HOH . E 4 HOH A 17 619 619 HOH HOH . E 4 HOH A 18 620 620 HOH HOH . E 4 HOH A 19 621 621 HOH HOH . E 4 HOH A 20 622 622 HOH HOH . E 4 HOH A 21 623 623 HOH HOH . E 4 HOH A 22 624 624 HOH HOH . E 4 HOH A 23 625 625 HOH HOH . E 4 HOH A 24 626 626 HOH HOH . E 4 HOH A 25 627 627 HOH HOH . E 4 HOH A 26 628 628 HOH HOH . E 4 HOH A 27 629 629 HOH HOH . E 4 HOH A 28 630 630 HOH HOH . E 4 HOH A 29 631 631 HOH HOH . E 4 HOH A 30 632 632 HOH HOH . E 4 HOH A 31 633 633 HOH HOH . E 4 HOH A 32 634 634 HOH HOH . E 4 HOH A 33 635 635 HOH HOH . E 4 HOH A 34 636 636 HOH HOH . E 4 HOH A 35 637 637 HOH HOH . E 4 HOH A 36 638 638 HOH HOH . E 4 HOH A 37 639 639 HOH HOH . E 4 HOH A 38 640 640 HOH HOH . E 4 HOH A 39 641 641 HOH HOH . E 4 HOH A 40 642 642 HOH HOH . E 4 HOH A 41 643 643 HOH HOH . E 4 HOH A 42 644 644 HOH HOH . E 4 HOH A 43 645 645 HOH HOH . E 4 HOH A 44 646 646 HOH HOH . E 4 HOH A 45 647 647 HOH HOH . E 4 HOH A 46 648 648 HOH HOH . E 4 HOH A 47 649 649 HOH HOH . E 4 HOH A 48 650 650 HOH HOH . E 4 HOH A 49 651 651 HOH HOH . E 4 HOH A 50 652 652 HOH HOH . E 4 HOH A 51 653 653 HOH HOH . E 4 HOH A 52 654 654 HOH HOH . E 4 HOH A 53 655 655 HOH HOH . E 4 HOH A 54 656 656 HOH HOH . E 4 HOH A 55 657 657 HOH HOH . E 4 HOH A 56 658 658 HOH HOH . E 4 HOH A 57 659 659 HOH HOH . E 4 HOH A 58 660 660 HOH HOH . E 4 HOH A 59 661 661 HOH HOH . E 4 HOH A 60 662 662 HOH HOH . E 4 HOH A 61 663 663 HOH HOH . E 4 HOH A 62 664 664 HOH HOH . E 4 HOH A 63 665 665 HOH HOH . E 4 HOH A 64 666 666 HOH HOH . E 4 HOH A 65 667 667 HOH HOH . E 4 HOH A 66 668 668 HOH HOH . E 4 HOH A 67 669 669 HOH HOH . E 4 HOH A 68 670 670 HOH HOH . E 4 HOH A 69 671 671 HOH HOH . E 4 HOH A 70 672 672 HOH HOH . E 4 HOH A 71 673 673 HOH HOH . E 4 HOH A 72 674 674 HOH HOH . E 4 HOH A 73 675 675 HOH HOH . E 4 HOH A 74 676 676 HOH HOH . E 4 HOH A 75 677 677 HOH HOH . E 4 HOH A 76 678 678 HOH HOH . E 4 HOH A 77 679 679 HOH HOH . E 4 HOH A 78 680 680 HOH HOH . E 4 HOH A 79 681 681 HOH HOH . E 4 HOH A 80 682 682 HOH HOH . E 4 HOH A 81 683 683 HOH HOH . E 4 HOH A 82 684 684 HOH HOH . E 4 HOH A 83 685 685 HOH HOH . E 4 HOH A 84 686 686 HOH HOH . E 4 HOH A 85 687 687 HOH HOH . E 4 HOH A 86 688 688 HOH HOH . E 4 HOH A 87 689 689 HOH HOH . E 4 HOH A 88 690 690 HOH HOH . E 4 HOH A 89 691 691 HOH HOH . E 4 HOH A 90 692 692 HOH HOH . E 4 HOH A 91 693 693 HOH HOH . E 4 HOH A 92 694 694 HOH HOH . E 4 HOH A 93 695 695 HOH HOH . E 4 HOH A 94 696 696 HOH HOH . E 4 HOH A 95 697 697 HOH HOH . E 4 HOH A 96 698 698 HOH HOH . E 4 HOH A 97 699 699 HOH HOH . E 4 HOH A 98 700 700 HOH HOH . E 4 HOH A 99 701 701 HOH HOH . E 4 HOH A 100 702 702 HOH HOH . E 4 HOH A 101 703 703 HOH HOH . E 4 HOH A 102 704 704 HOH HOH . E 4 HOH A 103 705 705 HOH HOH . E 4 HOH A 104 706 706 HOH HOH . E 4 HOH A 105 707 707 HOH HOH . E 4 HOH A 106 708 708 HOH HOH . E 4 HOH A 107 709 709 HOH HOH . E 4 HOH A 108 710 710 HOH HOH . E 4 HOH A 109 711 711 HOH HOH . E 4 HOH A 110 712 712 HOH HOH . E 4 HOH A 111 713 713 HOH HOH . E 4 HOH A 112 714 714 HOH HOH . E 4 HOH A 113 715 715 HOH HOH . E 4 HOH A 114 716 716 HOH HOH . E 4 HOH A 115 717 717 HOH HOH . E 4 HOH A 116 718 718 HOH HOH . E 4 HOH A 117 719 719 HOH HOH . E 4 HOH A 118 720 720 HOH HOH . E 4 HOH A 119 721 721 HOH HOH . E 4 HOH A 120 722 722 HOH HOH . E 4 HOH A 121 723 723 HOH HOH . E 4 HOH A 122 724 724 HOH HOH . E 4 HOH A 123 725 725 HOH HOH . E 4 HOH A 124 726 726 HOH HOH . E 4 HOH A 125 727 727 HOH HOH . E 4 HOH A 126 728 728 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -5.404 14.189 21.694 1 25.96 ? C1 GOL 600 A 1 HETATM 2 O O1 GOL . . . B 2 -5.734 13.316 22.74 1 24.53 ? O1 GOL 600 A 1 HETATM 3 C C2 GOL . . . B 2 -6.658 14.588 21.023 1 25.9 ? C2 GOL 600 A 1 HETATM 4 O O2 GOL . . . B 2 -7.258 15.378 22.014 1 27.78 ? O2 GOL 600 A 1 HETATM 5 C C3 GOL . . . B 2 -6.317 15.517 19.865 1 26.16 ? C3 GOL 600 A 1 HETATM 6 O O3 GOL . . . B 2 -7.561 15.933 19.268 1 25.47 ? O3 GOL 600 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #