data_3S0D # _model_server_result.job_id -wkC4xUu1dETVkKQPQcrZg _model_server_result.datetime_utc '2024-10-18 16:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":120}' # _entry.id 3S0D # _exptl.entry_id 3S0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.233 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-3,7-dimethylocta-2,6-dienenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S0D _cell.length_a 32.4 _cell.length_b 37.86 _cell.length_c 86.15 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C10 H15 N' _chem_comp.formula_weight 149.233 _chem_comp.id CTV _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-3,7-dimethylocta-2,6-dienenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms citralva # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 CTV sing 70 n n C1 H1 CTV sing 71 n n C1 H1A CTV sing 72 n n N1 C10 CTV trip 73 n n C2 C3 CTV sing 74 n n C2 H2 CTV sing 75 n n C2 H2A CTV sing 76 n n C2 H2B CTV sing 77 n n C3 C4 CTV doub 78 n n C4 C5 CTV sing 79 n n C4 H4 CTV sing 80 n n C5 C6 CTV sing 81 n n C5 H5 CTV sing 82 n n C5 H5A CTV sing 83 n n C6 C7 CTV sing 84 n n C6 H6 CTV sing 85 n n C6 H6A CTV sing 86 n n C7 C8 CTV doub 87 n n C7 C9 CTV sing 88 z n C8 C10 CTV sing 89 n n C8 H8 CTV sing 90 n n C9 H9 CTV sing 91 n n C9 H9A CTV sing 92 n n C9 H9B CTV sing 93 n n C1 H15 CTV sing 94 n n # _atom_sites.entry_id 3S0D _atom_sites.fract_transf_matrix[1][1] 0.030864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026413 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTV A 1 120 1 CTV CTV . C 3 HOH A 1 121 121 HOH HOH . C 3 HOH A 2 122 122 HOH HOH . C 3 HOH A 3 123 123 HOH HOH . C 3 HOH A 4 124 124 HOH HOH . C 3 HOH A 5 125 125 HOH HOH . C 3 HOH A 6 126 126 HOH HOH . C 3 HOH A 7 127 127 HOH HOH . C 3 HOH A 8 128 128 HOH HOH . C 3 HOH A 9 130 130 HOH HOH . C 3 HOH A 10 131 131 HOH HOH . C 3 HOH A 11 132 132 HOH HOH . C 3 HOH A 12 133 133 HOH HOH . C 3 HOH A 13 134 134 HOH HOH . C 3 HOH A 14 135 135 HOH HOH . C 3 HOH A 15 136 136 HOH HOH . C 3 HOH A 16 137 137 HOH HOH . C 3 HOH A 17 138 138 HOH HOH . C 3 HOH A 18 139 139 HOH HOH . C 3 HOH A 19 140 140 HOH HOH . C 3 HOH A 20 141 141 HOH HOH . C 3 HOH A 21 142 142 HOH HOH . C 3 HOH A 22 143 143 HOH HOH . C 3 HOH A 23 144 144 HOH HOH . C 3 HOH A 24 145 145 HOH HOH . C 3 HOH A 25 146 146 HOH HOH . C 3 HOH A 26 147 147 HOH HOH . C 3 HOH A 27 148 148 HOH HOH . C 3 HOH A 28 149 149 HOH HOH . C 3 HOH A 29 150 150 HOH HOH . C 3 HOH A 30 151 151 HOH HOH . C 3 HOH A 31 152 152 HOH HOH . C 3 HOH A 32 153 153 HOH HOH . C 3 HOH A 33 154 154 HOH HOH . C 3 HOH A 34 155 155 HOH HOH . C 3 HOH A 35 156 156 HOH HOH . C 3 HOH A 36 157 157 HOH HOH . C 3 HOH A 37 158 158 HOH HOH . C 3 HOH A 38 159 159 HOH HOH . C 3 HOH A 39 160 160 HOH HOH . C 3 HOH A 40 161 161 HOH HOH . C 3 HOH A 41 162 162 HOH HOH . C 3 HOH A 42 163 163 HOH HOH . C 3 HOH A 43 164 164 HOH HOH . C 3 HOH A 44 165 165 HOH HOH . C 3 HOH A 45 166 166 HOH HOH . C 3 HOH A 46 167 167 HOH HOH . C 3 HOH A 47 168 168 HOH HOH . C 3 HOH A 48 169 169 HOH HOH . C 3 HOH A 49 170 170 HOH HOH . C 3 HOH A 50 171 171 HOH HOH . C 3 HOH A 51 172 172 HOH HOH . C 3 HOH A 52 173 1 HOH HOH . C 3 HOH A 53 174 2 HOH HOH . C 3 HOH A 54 175 3 HOH HOH . C 3 HOH A 55 176 4 HOH HOH . C 3 HOH A 56 177 5 HOH HOH . C 3 HOH A 57 178 6 HOH HOH . C 3 HOH A 58 179 7 HOH HOH . C 3 HOH A 59 180 8 HOH HOH . C 3 HOH A 60 181 9 HOH HOH . C 3 HOH A 61 182 10 HOH HOH . C 3 HOH A 62 183 11 HOH HOH . C 3 HOH A 63 184 12 HOH HOH . C 3 HOH A 64 185 13 HOH HOH . C 3 HOH A 65 186 14 HOH HOH . C 3 HOH A 66 187 15 HOH HOH . C 3 HOH A 67 188 16 HOH HOH . C 3 HOH A 68 189 17 HOH HOH . C 3 HOH A 69 190 18 HOH HOH . C 3 HOH A 70 191 19 HOH HOH . C 3 HOH A 71 192 20 HOH HOH . C 3 HOH A 72 193 21 HOH HOH . C 3 HOH A 73 194 22 HOH HOH . C 3 HOH A 74 195 23 HOH HOH . C 3 HOH A 75 196 24 HOH HOH . C 3 HOH A 76 197 25 HOH HOH . C 3 HOH A 77 198 26 HOH HOH . C 3 HOH A 78 199 27 HOH HOH . C 3 HOH A 79 200 28 HOH HOH . C 3 HOH A 80 201 29 HOH HOH . C 3 HOH A 81 202 30 HOH HOH . C 3 HOH A 82 203 31 HOH HOH . C 3 HOH A 83 204 32 HOH HOH . C 3 HOH A 84 205 33 HOH HOH . C 3 HOH A 85 206 34 HOH HOH . C 3 HOH A 86 207 35 HOH HOH . C 3 HOH A 87 208 36 HOH HOH . C 3 HOH A 88 209 37 HOH HOH . C 3 HOH A 89 210 38 HOH HOH . C 3 HOH A 90 211 39 HOH HOH . C 3 HOH A 91 212 40 HOH HOH . C 3 HOH A 92 213 41 HOH HOH . C 3 HOH A 93 214 42 HOH HOH . C 3 HOH A 94 215 43 HOH HOH . C 3 HOH A 95 216 44 HOH HOH . C 3 HOH A 96 217 45 HOH HOH . C 3 HOH A 97 218 46 HOH HOH . C 3 HOH A 98 219 47 HOH HOH . C 3 HOH A 99 220 48 HOH HOH . C 3 HOH A 100 221 49 HOH HOH . C 3 HOH A 101 222 50 HOH HOH . C 3 HOH A 102 223 51 HOH HOH . C 3 HOH A 103 224 52 HOH HOH . C 3 HOH A 104 225 53 HOH HOH . C 3 HOH A 105 226 54 HOH HOH . C 3 HOH A 106 227 55 HOH HOH . C 3 HOH A 107 228 56 HOH HOH . C 3 HOH A 108 229 57 HOH HOH . C 3 HOH A 109 230 58 HOH HOH . C 3 HOH A 110 231 59 HOH HOH . C 3 HOH A 111 232 60 HOH HOH . C 3 HOH A 112 233 61 HOH HOH . C 3 HOH A 113 234 62 HOH HOH . C 3 HOH A 114 235 63 HOH HOH . C 3 HOH A 115 236 64 HOH HOH . C 3 HOH A 116 237 65 HOH HOH . C 3 HOH A 117 238 66 HOH HOH . C 3 HOH A 118 239 67 HOH HOH . C 3 HOH A 119 240 68 HOH HOH . C 3 HOH A 120 241 69 HOH HOH . C 3 HOH A 121 242 70 HOH HOH . C 3 HOH A 122 243 71 HOH HOH . C 3 HOH A 123 244 72 HOH HOH . C 3 HOH A 124 245 73 HOH HOH . C 3 HOH A 125 246 74 HOH HOH . C 3 HOH A 126 247 75 HOH HOH . C 3 HOH A 127 248 76 HOH HOH . C 3 HOH A 128 249 77 HOH HOH . C 3 HOH A 129 250 78 HOH HOH . C 3 HOH A 130 251 79 HOH HOH . C 3 HOH A 131 252 80 HOH HOH . C 3 HOH A 132 253 81 HOH HOH . C 3 HOH A 133 254 82 HOH HOH . C 3 HOH A 134 255 83 HOH HOH . C 3 HOH A 135 256 84 HOH HOH . C 3 HOH A 136 257 85 HOH HOH . C 3 HOH A 137 258 86 HOH HOH . C 3 HOH A 138 259 87 HOH HOH . C 3 HOH A 139 260 88 HOH HOH . C 3 HOH A 140 261 89 HOH HOH . C 3 HOH A 141 262 90 HOH HOH . C 3 HOH A 142 263 91 HOH HOH . C 3 HOH A 143 264 92 HOH HOH . C 3 HOH A 144 265 93 HOH HOH . C 3 HOH A 145 266 94 HOH HOH . C 3 HOH A 146 267 95 HOH HOH . C 3 HOH A 147 268 96 HOH HOH . C 3 HOH A 148 269 97 HOH HOH . C 3 HOH A 149 270 98 HOH HOH . C 3 HOH A 150 271 99 HOH HOH . C 3 HOH A 151 272 100 HOH HOH . C 3 HOH A 152 273 101 HOH HOH . C 3 HOH A 153 274 102 HOH HOH . C 3 HOH A 154 275 103 HOH HOH . C 3 HOH A 155 276 104 HOH HOH . C 3 HOH A 156 277 105 HOH HOH . C 3 HOH A 157 278 106 HOH HOH . C 3 HOH A 158 279 107 HOH HOH . C 3 HOH A 159 280 108 HOH HOH . C 3 HOH A 160 281 109 HOH HOH . C 3 HOH A 161 282 110 HOH HOH . C 3 HOH A 162 283 111 HOH HOH . C 3 HOH A 163 284 112 HOH HOH . C 3 HOH A 164 285 113 HOH HOH . C 3 HOH A 165 286 114 HOH HOH . C 3 HOH A 166 287 115 HOH HOH . C 3 HOH A 167 288 116 HOH HOH . C 3 HOH A 168 289 117 HOH HOH . C 3 HOH A 169 290 118 HOH HOH . C 3 HOH A 170 291 119 HOH HOH . C 3 HOH A 171 292 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CTV . . . B 2 8.429 10.545 29.637 1 33.4 ? C1 CTV 120 A 1 HETATM 2 N N1 CTV . . . B 2 8.311 15.057 33.294 1 22.58 ? N1 CTV 120 A 1 HETATM 3 C C2 CTV . . . B 2 8.032 12.488 28.476 1 32.49 ? C2 CTV 120 A 1 HETATM 4 C C3 CTV . . . B 2 8.486 11.866 29.584 1 31.8 ? C3 CTV 120 A 1 HETATM 5 C C4 CTV . . . B 2 8.615 12.679 30.883 1 30.7 ? C4 CTV 120 A 1 HETATM 6 C C5 CTV . . . B 2 9.833 12.703 31.607 1 26.65 ? C5 CTV 120 A 1 HETATM 7 C C6 CTV . . . B 2 10.01 11.425 32.359 1 22.03 ? C6 CTV 120 A 1 HETATM 8 C C7 CTV . . . B 2 9.917 11.523 33.924 1 18.86 ? C7 CTV 120 A 1 HETATM 9 C C8 CTV . . . B 2 9.417 12.681 34.679 1 18.47 ? C8 CTV 120 A 1 HETATM 10 C C9 CTV . . . B 2 10.283 10.212 34.818 1 19.6 ? C9 CTV 120 A 1 HETATM 11 C C10 CTV . . . B 2 8.913 13.844 34.005 1 20.48 ? C10 CTV 120 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #