data_3S0N
#
_model_server_result.job_id            cPdtatkfZCD7o0PdYliPgQ 
_model_server_result.datetime_utc      '2024-11-14 10:03:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s0n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":228}' 
#
_entry.id    3S0N 
#
_exptl.entry_id    3S0N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3S0N 
_cell.length_a            73.83 
_cell.length_b            73.83 
_cell.length_c            48.45 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S0N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 46 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
disulf ? disulf2 A SG CYS 123 A CYS 123 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
disulf ? disulf3 A SG CYS 154 A CYS 154 1_555 A SG CYS 167 A CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 B C1 NAG . A NAG 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 82 A ASN 82 1_555 C C1 NAG . A NAG 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? 
metalc ? metalc1 A NE2 HIS 10 A HIS 10 1_555 D ZN ZN . A ZN 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 A OE1 GLU 64 A GLU 64 1_555 D ZN ZN . A ZN 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 287 n n 
C1 O1 NAG sing 288 n n 
C1 O5 NAG sing 289 n n 
C1 H1 NAG sing 290 n n 
C2 C3 NAG sing 291 n n 
C2 N2 NAG sing 292 n n 
C2 H2 NAG sing 293 n n 
C3 C4 NAG sing 294 n n 
C3 O3 NAG sing 295 n n 
C3 H3 NAG sing 296 n n 
C4 C5 NAG sing 297 n n 
C4 O4 NAG sing 298 n n 
C4 H4 NAG sing 299 n n 
C5 C6 NAG sing 300 n n 
C5 O5 NAG sing 301 n n 
C5 H5 NAG sing 302 n n 
C6 O6 NAG sing 303 n n 
C6 H61 NAG sing 304 n n 
C6 H62 NAG sing 305 n n 
C7 C8 NAG sing 306 n n 
C7 N2 NAG sing 307 n n 
C7 O7 NAG doub 308 n n 
C8 H81 NAG sing 309 n n 
C8 H82 NAG sing 310 n n 
C8 H83 NAG sing 311 n n 
N2 HN2 NAG sing 312 n n 
O1 HO1 NAG sing 313 n n 
O3 HO3 NAG sing 314 n n 
O4 HO4 NAG sing 315 n n 
O6 HO6 NAG sing 316 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3S0N 
_atom_sites.fract_transf_matrix[1][1]    0.013545 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013545 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 227 1 NAG NAG . 
C 2 NAG A 1 228 2 NAG NAG . 
D 3 ZN A 1 229 1 ZN ZN . 
E 4 0BB A 1 230 1 0BB 0BB . 
F 5 HOH A 1 22 22 HOH HOH . 
F 5 HOH A 2 23 23 HOH HOH . 
F 5 HOH A 3 24 24 HOH HOH . 
F 5 HOH A 4 162 162 HOH HOH . 
F 5 HOH A 5 171 171 HOH HOH . 
F 5 HOH A 6 231 1 HOH HOH . 
F 5 HOH A 7 232 2 HOH HOH . 
F 5 HOH A 8 233 3 HOH HOH . 
F 5 HOH A 9 234 4 HOH HOH . 
F 5 HOH A 10 235 5 HOH HOH . 
F 5 HOH A 11 236 6 HOH HOH . 
F 5 HOH A 12 237 7 HOH HOH . 
F 5 HOH A 13 238 8 HOH HOH . 
F 5 HOH A 14 239 9 HOH HOH . 
F 5 HOH A 15 240 10 HOH HOH . 
F 5 HOH A 16 241 11 HOH HOH . 
F 5 HOH A 17 242 12 HOH HOH . 
F 5 HOH A 18 243 13 HOH HOH . 
F 5 HOH A 19 244 14 HOH HOH . 
F 5 HOH A 20 245 15 HOH HOH . 
F 5 HOH A 21 246 16 HOH HOH . 
F 5 HOH A 22 247 17 HOH HOH . 
F 5 HOH A 23 248 18 HOH HOH . 
F 5 HOH A 24 249 19 HOH HOH . 
F 5 HOH A 25 250 20 HOH HOH . 
F 5 HOH A 26 251 21 HOH HOH . 
F 5 HOH A 27 252 25 HOH HOH . 
F 5 HOH A 28 253 26 HOH HOH . 
F 5 HOH A 29 254 27 HOH HOH . 
F 5 HOH A 30 255 28 HOH HOH . 
F 5 HOH A 31 256 29 HOH HOH . 
F 5 HOH A 32 257 30 HOH HOH . 
F 5 HOH A 33 258 31 HOH HOH . 
F 5 HOH A 34 259 32 HOH HOH . 
F 5 HOH A 35 260 33 HOH HOH . 
F 5 HOH A 36 261 34 HOH HOH . 
F 5 HOH A 37 262 35 HOH HOH . 
F 5 HOH A 38 263 36 HOH HOH . 
F 5 HOH A 39 264 37 HOH HOH . 
F 5 HOH A 40 265 38 HOH HOH . 
F 5 HOH A 41 266 39 HOH HOH . 
F 5 HOH A 42 267 40 HOH HOH . 
F 5 HOH A 43 268 41 HOH HOH . 
F 5 HOH A 44 269 42 HOH HOH . 
F 5 HOH A 45 270 43 HOH HOH . 
F 5 HOH A 46 271 44 HOH HOH . 
F 5 HOH A 47 272 45 HOH HOH . 
F 5 HOH A 48 273 46 HOH HOH . 
F 5 HOH A 49 274 47 HOH HOH . 
F 5 HOH A 50 275 48 HOH HOH . 
F 5 HOH A 51 276 49 HOH HOH . 
F 5 HOH A 52 277 50 HOH HOH . 
F 5 HOH A 53 278 51 HOH HOH . 
F 5 HOH A 54 279 52 HOH HOH . 
F 5 HOH A 55 280 53 HOH HOH . 
F 5 HOH A 56 281 54 HOH HOH . 
F 5 HOH A 57 282 55 HOH HOH . 
F 5 HOH A 58 283 56 HOH HOH . 
F 5 HOH A 59 284 57 HOH HOH . 
F 5 HOH A 60 285 58 HOH HOH . 
F 5 HOH A 61 286 59 HOH HOH . 
F 5 HOH A 62 287 60 HOH HOH . 
F 5 HOH A 63 288 61 HOH HOH . 
F 5 HOH A 64 289 62 HOH HOH . 
F 5 HOH A 65 290 63 HOH HOH . 
F 5 HOH A 66 291 64 HOH HOH . 
F 5 HOH A 67 292 65 HOH HOH . 
F 5 HOH A 68 293 66 HOH HOH . 
F 5 HOH A 69 294 67 HOH HOH . 
F 5 HOH A 70 295 68 HOH HOH . 
F 5 HOH A 71 296 69 HOH HOH . 
F 5 HOH A 72 297 70 HOH HOH . 
F 5 HOH A 73 298 71 HOH HOH . 
F 5 HOH A 74 299 72 HOH HOH . 
F 5 HOH A 75 300 73 HOH HOH . 
F 5 HOH A 76 301 74 HOH HOH . 
F 5 HOH A 77 302 75 HOH HOH . 
F 5 HOH A 78 303 76 HOH HOH . 
F 5 HOH A 79 304 77 HOH HOH . 
F 5 HOH A 80 305 78 HOH HOH . 
F 5 HOH A 81 306 79 HOH HOH . 
F 5 HOH A 82 307 80 HOH HOH . 
F 5 HOH A 83 308 81 HOH HOH . 
F 5 HOH A 84 309 82 HOH HOH . 
F 5 HOH A 85 310 83 HOH HOH . 
F 5 HOH A 86 311 84 HOH HOH . 
F 5 HOH A 87 312 85 HOH HOH . 
F 5 HOH A 88 313 86 HOH HOH . 
F 5 HOH A 89 314 87 HOH HOH . 
F 5 HOH A 90 315 88 HOH HOH . 
F 5 HOH A 91 316 89 HOH HOH . 
F 5 HOH A 92 317 90 HOH HOH . 
F 5 HOH A 93 318 91 HOH HOH . 
F 5 HOH A 94 319 92 HOH HOH . 
F 5 HOH A 95 320 93 HOH HOH . 
F 5 HOH A 96 321 94 HOH HOH . 
F 5 HOH A 97 322 95 HOH HOH . 
F 5 HOH A 98 323 96 HOH HOH . 
F 5 HOH A 99 324 97 HOH HOH . 
F 5 HOH A 100 325 98 HOH HOH . 
F 5 HOH A 101 326 99 HOH HOH . 
F 5 HOH A 102 327 100 HOH HOH . 
F 5 HOH A 103 328 101 HOH HOH . 
F 5 HOH A 104 329 102 HOH HOH . 
F 5 HOH A 105 330 103 HOH HOH . 
F 5 HOH A 106 331 104 HOH HOH . 
F 5 HOH A 107 332 105 HOH HOH . 
F 5 HOH A 108 333 106 HOH HOH . 
F 5 HOH A 109 334 107 HOH HOH . 
F 5 HOH A 110 335 108 HOH HOH . 
F 5 HOH A 111 336 109 HOH HOH . 
F 5 HOH A 112 337 110 HOH HOH . 
F 5 HOH A 113 338 111 HOH HOH . 
F 5 HOH A 114 339 112 HOH HOH . 
F 5 HOH A 115 340 113 HOH HOH . 
F 5 HOH A 116 341 114 HOH HOH . 
F 5 HOH A 117 342 115 HOH HOH . 
F 5 HOH A 118 343 116 HOH HOH . 
F 5 HOH A 119 344 117 HOH HOH . 
F 5 HOH A 120 345 118 HOH HOH . 
F 5 HOH A 121 346 119 HOH HOH . 
F 5 HOH A 122 347 120 HOH HOH . 
F 5 HOH A 123 348 121 HOH HOH . 
F 5 HOH A 124 349 122 HOH HOH . 
F 5 HOH A 125 350 123 HOH HOH . 
F 5 HOH A 126 351 124 HOH HOH . 
F 5 HOH A 127 352 125 HOH HOH . 
F 5 HOH A 128 353 126 HOH HOH . 
F 5 HOH A 129 354 127 HOH HOH . 
F 5 HOH A 130 355 128 HOH HOH . 
F 5 HOH A 131 356 129 HOH HOH . 
F 5 HOH A 132 357 130 HOH HOH . 
F 5 HOH A 133 358 131 HOH HOH . 
F 5 HOH A 134 359 132 HOH HOH . 
F 5 HOH A 135 360 133 HOH HOH . 
F 5 HOH A 136 361 134 HOH HOH . 
F 5 HOH A 137 362 135 HOH HOH . 
F 5 HOH A 138 363 136 HOH HOH . 
F 5 HOH A 139 364 137 HOH HOH . 
F 5 HOH A 140 365 138 HOH HOH . 
F 5 HOH A 141 366 139 HOH HOH . 
F 5 HOH A 142 367 140 HOH HOH . 
F 5 HOH A 143 368 141 HOH HOH . 
F 5 HOH A 144 369 142 HOH HOH . 
F 5 HOH A 145 370 143 HOH HOH . 
F 5 HOH A 146 371 144 HOH HOH . 
F 5 HOH A 147 372 145 HOH HOH . 
F 5 HOH A 148 373 146 HOH HOH . 
F 5 HOH A 149 374 147 HOH HOH . 
F 5 HOH A 150 375 148 HOH HOH . 
F 5 HOH A 151 376 149 HOH HOH . 
F 5 HOH A 152 377 150 HOH HOH . 
F 5 HOH A 153 378 151 HOH HOH . 
F 5 HOH A 154 379 152 HOH HOH . 
F 5 HOH A 155 380 153 HOH HOH . 
F 5 HOH A 156 381 154 HOH HOH . 
F 5 HOH A 157 382 155 HOH HOH . 
F 5 HOH A 158 383 156 HOH HOH . 
F 5 HOH A 159 384 157 HOH HOH . 
F 5 HOH A 160 385 158 HOH HOH . 
F 5 HOH A 161 386 159 HOH HOH . 
F 5 HOH A 162 387 160 HOH HOH . 
F 5 HOH A 163 388 161 HOH HOH . 
F 5 HOH A 164 389 163 HOH HOH . 
F 5 HOH A 165 390 164 HOH HOH . 
F 5 HOH A 166 391 165 HOH HOH . 
F 5 HOH A 167 392 166 HOH HOH . 
F 5 HOH A 168 393 167 HOH HOH . 
F 5 HOH A 169 394 168 HOH HOH . 
F 5 HOH A 170 395 169 HOH HOH . 
F 5 HOH A 171 396 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 2 18.959 14.517 18.045 1 46.5 ? C1 NAG 228 A 1 
HETATM 2 C C2 NAG . . . C 2 18.361 14.454 19.452 1 49.02 ? C2 NAG 228 A 1 
HETATM 3 C C3 NAG . . . C 2 19.456 14.134 20.474 1 50.23 ? C3 NAG 228 A 1 
HETATM 4 C C4 NAG . . . C 2 20.233 12.88 20.063 1 50.65 ? C4 NAG 228 A 1 
HETATM 5 C C5 NAG . . . C 2 20.727 13.005 18.616 1 50.67 ? C5 NAG 228 A 1 
HETATM 6 C C6 NAG . . . C 2 21.393 11.732 18.12 1 50.68 ? C6 NAG 228 A 1 
HETATM 7 C C7 NAG . . . C 2 16.427 15.781 19.987 1 52.45 ? C7 NAG 228 A 1 
HETATM 8 C C8 NAG . . . C 2 15.586 16.466 18.922 1 53.03 ? C8 NAG 228 A 1 
HETATM 9 N N2 NAG . . . C 2 17.739 15.721 19.783 1 51.05 ? N2 NAG 228 A 1 
HETATM 10 O O3 NAG . . . C 2 18.87 13.933 21.752 1 50.39 ? O3 NAG 228 A 1 
HETATM 11 O O4 NAG . . . C 2 21.344 12.703 20.929 1 53.24 ? O4 NAG 228 A 1 
HETATM 12 O O5 NAG . . . C 2 19.616 13.281 17.731 1 48.86 ? O5 NAG 228 A 1 
HETATM 13 O O6 NAG . . . C 2 22.495 12.022 17.27 1 50.19 ? O6 NAG 228 A 1 
HETATM 14 O O7 NAG . . . C 2 15.886 15.302 20.983 1 54.01 ? O7 NAG 228 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#