data_3S11 # _model_server_result.job_id UJflceDg54S_tXeR_DxnUg _model_server_result.datetime_utc '2024-10-17 13:29:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2}' # _entry.id 3S11 # _exptl.entry_id 3S11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.69 _cell.angle_gamma 90 _cell.entry_id 3S11 _cell.length_a 69.365 _cell.length_b 241.054 _cell.length_c 70.061 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 N N N ? 6 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 2 NAG 3 n G NAG 2 G 2 NAG A 327 NAG 4 n H NAG 1 H 1 NAG C 328 NAG 4 n H NAG 2 H 2 NAG C 329 NAG 4 n H BMA 3 H 3 BMA C 330 BMA 3 n I NAG 1 I 1 NAG E 328 NAG 3 n I NAG 2 I 2 NAG E 329 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 50 A CYS 52 1_555 A SG CYS 282 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 63 A CYS 64 1_555 A SG CYS 75 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 98 A CYS 97 1_555 A SG CYS 143 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 A SG CYS 286 A CYS 281 1_555 A SG CYS 310 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 12 C CYS 14 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 C SG CYS 50 C CYS 52 1_555 C SG CYS 282 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf9 C SG CYS 63 C CYS 64 1_555 C SG CYS 75 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf10 C SG CYS 98 C CYS 97 1_555 C SG CYS 143 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf11 C SG CYS 286 C CYS 281 1_555 C SG CYS 310 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 E SG CYS 12 E CYS 14 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf14 E SG CYS 50 E CYS 52 1_555 E SG CYS 282 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf15 E SG CYS 63 E CYS 64 1_555 E SG CYS 75 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf16 E SG CYS 98 E CYS 97 1_555 E SG CYS 143 E CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf17 E SG CYS 286 E CYS 281 1_555 E SG CYS 310 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 J C1 NAG . A NAG 1 1_555 A ND2 ASN 31 A ASN 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A OD1 ASN 173 A ASN 169 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 C ND2 ASN 31 C ASN 34 1_555 M C1 NAG . C NAG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.576 ? covale ? covale4 C OD1 ASN 173 C ASN 169 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 E ND2 ASN 31 E ASN 34 1_555 O C1 NAG . E NAG 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale6 E OD1 ASN 173 E ASN 169 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale10 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 3S11 _atom_sites.fract_transf_matrix[1][1] 0.014416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007248 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 5 NAG A 1 1 1 NAG NAG . K 6 GOL A 1 328 328 GOL GOL . L 7 TAM A 1 329 329 TAM TAM . M 5 NAG C 1 327 327 NAG NAG . N 6 GOL C 1 2 2 GOL GOL . O 5 NAG E 1 327 327 NAG NAG . P 6 GOL E 1 330 330 GOL GOL . Q 8 HOH A 1 29 29 HOH HOH . Q 8 HOH A 2 30 30 HOH HOH . Q 8 HOH A 3 330 330 HOH HOH . Q 8 HOH A 4 331 331 HOH HOH . Q 8 HOH A 5 332 332 HOH HOH . Q 8 HOH A 6 333 333 HOH HOH . Q 8 HOH A 7 334 334 HOH HOH . Q 8 HOH A 8 335 335 HOH HOH . Q 8 HOH A 9 336 336 HOH HOH . Q 8 HOH A 10 337 337 HOH HOH . Q 8 HOH A 11 338 338 HOH HOH . Q 8 HOH A 12 339 339 HOH HOH . Q 8 HOH A 13 340 340 HOH HOH . Q 8 HOH A 14 341 341 HOH HOH . Q 8 HOH A 15 342 342 HOH HOH . Q 8 HOH A 16 343 343 HOH HOH . Q 8 HOH A 17 344 344 HOH HOH . Q 8 HOH A 18 345 345 HOH HOH . Q 8 HOH A 19 346 346 HOH HOH . Q 8 HOH A 20 347 347 HOH HOH . Q 8 HOH A 21 348 348 HOH HOH . Q 8 HOH A 22 349 349 HOH HOH . Q 8 HOH A 23 350 350 HOH HOH . Q 8 HOH A 24 351 351 HOH HOH . Q 8 HOH A 25 352 352 HOH HOH . Q 8 HOH A 26 353 353 HOH HOH . Q 8 HOH A 27 354 354 HOH HOH . Q 8 HOH A 28 355 355 HOH HOH . Q 8 HOH A 29 356 356 HOH HOH . Q 8 HOH A 30 357 357 HOH HOH . Q 8 HOH A 31 358 358 HOH HOH . Q 8 HOH A 32 359 359 HOH HOH . Q 8 HOH A 33 360 360 HOH HOH . Q 8 HOH A 34 361 361 HOH HOH . Q 8 HOH A 35 362 362 HOH HOH . Q 8 HOH A 36 363 363 HOH HOH . Q 8 HOH A 37 364 364 HOH HOH . Q 8 HOH A 38 365 365 HOH HOH . R 8 HOH B 1 183 183 HOH HOH . R 8 HOH B 2 184 184 HOH HOH . R 8 HOH B 3 185 185 HOH HOH . R 8 HOH B 4 186 186 HOH HOH . R 8 HOH B 5 187 187 HOH HOH . R 8 HOH B 6 188 188 HOH HOH . R 8 HOH B 7 189 189 HOH HOH . R 8 HOH B 8 190 190 HOH HOH . R 8 HOH B 9 191 191 HOH HOH . R 8 HOH B 10 192 192 HOH HOH . R 8 HOH B 11 193 193 HOH HOH . R 8 HOH B 12 194 194 HOH HOH . R 8 HOH B 13 195 195 HOH HOH . R 8 HOH B 14 196 196 HOH HOH . R 8 HOH B 15 197 197 HOH HOH . R 8 HOH B 16 198 198 HOH HOH . S 8 HOH C 1 331 331 HOH HOH . S 8 HOH C 2 332 332 HOH HOH . S 8 HOH C 3 333 333 HOH HOH . S 8 HOH C 4 334 334 HOH HOH . S 8 HOH C 5 335 335 HOH HOH . S 8 HOH C 6 336 336 HOH HOH . S 8 HOH C 7 337 337 HOH HOH . S 8 HOH C 8 338 338 HOH HOH . S 8 HOH C 9 339 339 HOH HOH . S 8 HOH C 10 340 340 HOH HOH . S 8 HOH C 11 341 341 HOH HOH . S 8 HOH C 12 342 342 HOH HOH . S 8 HOH C 13 343 343 HOH HOH . S 8 HOH C 14 344 344 HOH HOH . S 8 HOH C 15 345 345 HOH HOH . S 8 HOH C 16 346 346 HOH HOH . S 8 HOH C 17 347 347 HOH HOH . S 8 HOH C 18 348 348 HOH HOH . S 8 HOH C 19 349 349 HOH HOH . S 8 HOH C 20 350 350 HOH HOH . S 8 HOH C 21 351 351 HOH HOH . S 8 HOH C 22 352 352 HOH HOH . S 8 HOH C 23 353 353 HOH HOH . S 8 HOH C 24 354 354 HOH HOH . S 8 HOH C 25 355 355 HOH HOH . S 8 HOH C 26 356 356 HOH HOH . S 8 HOH C 27 357 357 HOH HOH . S 8 HOH C 28 358 358 HOH HOH . S 8 HOH C 29 359 359 HOH HOH . S 8 HOH C 30 360 360 HOH HOH . S 8 HOH C 31 361 361 HOH HOH . S 8 HOH C 32 362 362 HOH HOH . S 8 HOH C 33 363 363 HOH HOH . S 8 HOH C 34 364 364 HOH HOH . S 8 HOH C 35 365 365 HOH HOH . S 8 HOH C 36 366 366 HOH HOH . S 8 HOH C 37 367 367 HOH HOH . S 8 HOH C 38 368 368 HOH HOH . S 8 HOH C 39 369 369 HOH HOH . S 8 HOH C 40 370 370 HOH HOH . S 8 HOH C 41 371 371 HOH HOH . S 8 HOH C 42 372 372 HOH HOH . S 8 HOH C 43 373 373 HOH HOH . T 8 HOH D 1 183 183 HOH HOH . T 8 HOH D 2 184 184 HOH HOH . T 8 HOH D 3 185 185 HOH HOH . T 8 HOH D 4 186 186 HOH HOH . T 8 HOH D 5 187 187 HOH HOH . T 8 HOH D 6 188 188 HOH HOH . T 8 HOH D 7 189 189 HOH HOH . T 8 HOH D 8 190 190 HOH HOH . T 8 HOH D 9 191 191 HOH HOH . U 8 HOH E 1 1 1 HOH HOH . U 8 HOH E 2 331 331 HOH HOH . U 8 HOH E 3 332 332 HOH HOH . U 8 HOH E 4 333 333 HOH HOH . U 8 HOH E 5 334 334 HOH HOH . U 8 HOH E 6 335 335 HOH HOH . U 8 HOH E 7 336 336 HOH HOH . U 8 HOH E 8 337 337 HOH HOH . U 8 HOH E 9 338 338 HOH HOH . U 8 HOH E 10 339 339 HOH HOH . U 8 HOH E 11 340 340 HOH HOH . U 8 HOH E 12 341 341 HOH HOH . U 8 HOH E 13 342 342 HOH HOH . U 8 HOH E 14 343 343 HOH HOH . U 8 HOH E 15 344 344 HOH HOH . U 8 HOH E 16 345 345 HOH HOH . U 8 HOH E 17 346 346 HOH HOH . U 8 HOH E 18 347 347 HOH HOH . V 8 HOH F 1 183 183 HOH HOH . V 8 HOH F 2 184 184 HOH HOH . V 8 HOH F 3 185 185 HOH HOH . V 8 HOH F 4 186 186 HOH HOH . V 8 HOH F 5 187 187 HOH HOH . V 8 HOH F 6 188 188 HOH HOH . V 8 HOH F 7 189 189 HOH HOH . V 8 HOH F 8 190 190 HOH HOH . V 8 HOH F 9 191 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 6 -12.267 3.924 -4.229 1 60.58 ? C1 GOL 2 C 1 HETATM 2 O O1 GOL . . . N 6 -11.023 4.374 -3.742 1 61.08 ? O1 GOL 2 C 1 HETATM 3 C C2 GOL . . . N 6 -13.122 3.455 -3.061 1 60.58 ? C2 GOL 2 C 1 HETATM 4 O O2 GOL . . . N 6 -12.747 4.15 -1.893 1 60.91 ? O2 GOL 2 C 1 HETATM 5 C C3 GOL . . . N 6 -12.903 1.964 -2.847 1 60.41 ? C3 GOL 2 C 1 HETATM 6 O O3 GOL . . . N 6 -13.508 1.227 -3.886 1 60.4 ? O3 GOL 2 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #