data_3S1Q # _model_server_result.job_id zZBaHdoS83rvUkcgHrHDtA _model_server_result.datetime_utc '2025-07-04 02:35:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1736}' # _entry.id 3S1Q # _exptl.entry_id 3S1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.48 _cell.angle_gamma 90 _cell.entry_id 3S1Q _cell.length_a 161.94 _cell.length_b 220.53 _cell.length_c 193.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 67 A CYS 67 1_555 P ZN ZN . A ZN 1735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc2 A SG CYS 70 A CYS 70 1_555 P ZN ZN . A ZN 1735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc3 A SG CYS 77 A CYS 77 1_555 P ZN ZN . A ZN 1735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A NE2 HIS 80 A HIS 80 1_555 P ZN ZN . A ZN 1735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc5 A SG CYS 107 A CYS 107 1_555 O ZN ZN . A ZN 1734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc6 A SG CYS 110 A CYS 110 1_555 O ZN ZN . A ZN 1734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A SG CYS 148 A CYS 148 1_555 O ZN ZN . A ZN 1734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc8 A SG CYS 167 A CYS 167 1_555 O ZN ZN . A ZN 1734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc9 A OD1 ASP 481 A ASP 481 1_555 M MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc10 A OD2 ASP 481 A ASP 481 1_555 N MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc11 A OD2 ASP 483 A ASP 483 1_555 M MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc12 A OD1 ASP 483 A ASP 483 1_555 M MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc13 A OD1 ASP 483 A ASP 483 1_555 N MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc14 A OD1 ASP 485 A ASP 485 1_555 M MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc15 Q O2A ATP . A ATP 1736 1_555 M MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 Q O3G ATP . A ATP 1736 1_555 N MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc17 B SG CYS 1163 B CYS 1163 1_555 R ZN ZN . B ZN 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc18 B SG CYS 1166 B CYS 1166 1_555 R ZN ZN . B ZN 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc19 B SG CYS 1182 B CYS 1182 1_555 R ZN ZN . B ZN 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc20 B SG CYS 1185 B CYS 1185 1_555 R ZN ZN . B ZN 1307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc21 C SG CYS 86 C CYS 86 1_555 S ZN ZN . C ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc22 C SG CYS 88 C CYS 88 1_555 S ZN ZN . C ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc23 C SG CYS 92 C CYS 92 1_555 S ZN ZN . C ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc24 C SG CYS 95 C CYS 95 1_555 S ZN ZN . C ZN 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc25 G SG CYS 7 I CYS 7 1_555 T ZN ZN . I ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc26 G SG CYS 10 I CYS 10 1_555 T ZN ZN . I ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc27 G SG CYS 29 I CYS 29 1_555 T ZN ZN . I ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc28 G SG CYS 32 I CYS 32 1_555 T ZN ZN . I ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc29 G SG CYS 75 I CYS 75 1_555 U ZN ZN . I ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc30 G SG CYS 78 I CYS 78 1_555 U ZN ZN . I ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc31 G SG CYS 103 I CYS 103 1_555 U ZN ZN . I ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc32 G SG CYS 106 I CYS 106 1_555 U ZN ZN . I ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc33 H SG CYS 7 J CYS 7 1_555 V ZN ZN . J ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc34 H SG CYS 10 J CYS 10 1_555 V ZN ZN . J ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc35 H SG CYS 45 J CYS 45 1_555 V ZN ZN . J ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc36 H SG CYS 46 J CYS 46 1_555 V ZN ZN . J ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc37 J SG CYS 31 L CYS 31 1_555 W ZN ZN . L ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc38 J SG CYS 34 L CYS 34 1_555 W ZN ZN . L ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc39 J SG CYS 48 L CYS 48 1_555 W ZN ZN . L ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc40 J SG CYS 51 L CYS 51 1_555 W ZN ZN . L ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? hydrog 'A-DT PAIR' hydrog1 K N6 A 1 R A 6 1_555 L O4 DT 24 T DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-DC MISPAIR' hydrog2 K N1 A 1 R A 6 1_555 L N4 DC 25 T DC 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 K N1 G 2 R G 7 1_555 L N3 DC 23 T DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 K N2 G 2 R G 7 1_555 L O2 DC 23 T DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 K O6 G 2 R G 7 1_555 L N4 DC 23 T DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 K N1 A 3 R A 8 1_555 L N3 DT 22 T DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 K N6 A 3 R A 8 1_555 L O4 DT 22 T DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 K N1 G 4 R G 9 1_555 L N3 DC 21 T DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 K N2 G 4 R G 9 1_555 L O2 DC 21 T DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 K O6 G 4 R G 9 1_555 L N4 DC 21 T DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 K N1 G 5 R G 10 1_555 L N3 DC 20 T DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 K N2 G 5 R G 10 1_555 L O2 DC 20 T DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 K O6 G 5 R G 10 1_555 L N4 DC 20 T DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 3S1Q _atom_sites.fract_transf_matrix[1][1] 0.006175 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000921 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 13 MG A 1 2001 2001 MG MG . N 13 MG A 1 2002 2002 MG MG . O 14 ZN A 1 1734 1734 ZN ZN . P 14 ZN A 1 1735 1735 ZN ZN . Q 15 ATP A 1 1736 100 ATP ATP . R 14 ZN B 1 1307 1307 ZN ZN . S 14 ZN C 1 319 319 ZN ZN . T 14 ZN I 1 203 203 ZN ZN . U 14 ZN I 1 204 204 ZN ZN . V 14 ZN J 1 101 101 ZN ZN . W 14 ZN L 1 105 105 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Q 15 0.173 -40.871 50.627 1 197.4 ? PG ATP 1736 A 1 HETATM 2 O O1G ATP . . . Q 15 -0.834 -41.115 51.715 1 196.41 ? O1G ATP 1736 A 1 HETATM 3 O O2G ATP . . . Q 15 -0.02 -39.487 49.997 1 195.59 ? O2G ATP 1736 A 1 HETATM 4 O O3G ATP . . . Q 15 0.092 -41.942 49.541 1 194.98 ? O3G ATP 1736 A 1 HETATM 5 P PB ATP . . . Q 15 2.625 -42.028 51.341 1 188.53 ? PB ATP 1736 A 1 HETATM 6 O O1B ATP . . . Q 15 3.609 -41.817 52.567 1 188.88 ? O1B ATP 1736 A 1 HETATM 7 O O2B ATP . . . Q 15 1.942 -43.448 51.412 1 189.25 ? O2B ATP 1736 A 1 HETATM 8 O O3B ATP . . . Q 15 1.511 -40.928 51.435 1 193.38 ? O3B ATP 1736 A 1 HETATM 9 P PA ATP . . . Q 15 3.821 -40.791 48.816 1 174.55 ? PA ATP 1736 A 1 HETATM 10 O O1A ATP . . . Q 15 2.916 -39.55 48.494 1 174.16 ? O1A ATP 1736 A 1 HETATM 11 O O2A ATP . . . Q 15 3.94 -41.596 47.516 1 175.46 ? O2A ATP 1736 A 1 HETATM 12 O O3A ATP . . . Q 15 3.28 -41.927 49.852 1 184.75 ? O3A ATP 1736 A 1 HETATM 13 O O5' ATP . . . Q 15 5.286 -40.362 49.347 1 172.29 ? O5' ATP 1736 A 1 HETATM 14 C C5' ATP . . . Q 15 6.297 -40.279 48.395 1 167.29 ? C5' ATP 1736 A 1 HETATM 15 C C4' ATP . . . Q 15 7.042 -41.588 48.3 1 165.96 ? C4' ATP 1736 A 1 HETATM 16 O O4' ATP . . . Q 15 8.006 -41.405 47.262 1 164.61 ? O4' ATP 1736 A 1 HETATM 17 C C3' ATP . . . Q 15 7.844 -41.929 49.53 1 165.15 ? C3' ATP 1736 A 1 HETATM 18 O O3' ATP . . . Q 15 7.238 -42.78 50.524 1 166.38 ? O3' ATP 1736 A 1 HETATM 19 C C2' ATP . . . Q 15 9.283 -42.167 48.995 1 165.14 ? C2' ATP 1736 A 1 HETATM 20 O O2' ATP . . . Q 15 9.602 -43.485 48.546 1 165.24 ? O2' ATP 1736 A 1 HETATM 21 C C1' ATP . . . Q 15 9.315 -41.244 47.802 1 163.78 ? C1' ATP 1736 A 1 HETATM 22 N N9 ATP . . . Q 15 9.658 -39.859 48.147 1 163.42 ? N9 ATP 1736 A 1 HETATM 23 C C8 ATP . . . Q 15 8.882 -38.766 48.523 1 163.04 ? C8 ATP 1736 A 1 HETATM 24 N N7 ATP . . . Q 15 9.544 -37.652 48.79 1 163.66 ? N7 ATP 1736 A 1 HETATM 25 C C5 ATP . . . Q 15 10.847 -38.032 48.573 1 162.48 ? C5 ATP 1736 A 1 HETATM 26 C C6 ATP . . . Q 15 12.075 -37.33 48.685 1 163.2 ? C6 ATP 1736 A 1 HETATM 27 N N6 ATP . . . Q 15 12.132 -36.01 49.072 1 163.14 ? N6 ATP 1736 A 1 HETATM 28 N N1 ATP . . . Q 15 13.254 -38.002 48.4 1 163.01 ? N1 ATP 1736 A 1 HETATM 29 C C2 ATP . . . Q 15 13.209 -39.328 48.028 1 162.59 ? C2 ATP 1736 A 1 HETATM 30 N N3 ATP . . . Q 15 12.081 -40.098 47.89 1 163.18 ? N3 ATP 1736 A 1 HETATM 31 C C4 ATP . . . Q 15 10.943 -39.396 48.178 1 162.78 ? C4 ATP 1736 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 731 _model_server_stats.encode_time_ms 86 _model_server_stats.element_count 31 #