data_3S21 # _model_server_result.job_id PHLIH3MPZcsGetn8WpzaiQ _model_server_result.datetime_utc '2024-11-06 04:49:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":359}' # _entry.id 3S21 # _exptl.entry_id 3S21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S21 _cell.length_a 90.516 _cell.length_b 90.516 _cell.length_c 69.793 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.264333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MN MN . A MN 1 1_555 A ND1 HIS 25 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 63 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 CER sing 70 n n C1 C2 CER sing 71 n n C1 O2 CER doub 72 n n N1 HN11 CER sing 73 n n N1 HN12 CER sing 74 n n O1 C4 CER doub 75 n n C2 C3 CER sing 76 n n C2 H21 CER sing 77 n n C2 H22 CER sing 78 n n C3 O3 CER sing 79 n n C3 C4 CER sing 80 n n C3 H31 CER sing 81 n n O3 HO3 CER sing 82 n n C4 C5 CER sing 83 n n C5 C6 CER sing 84 n n C5 H51 CER sing 85 n n C5 H52 CER sing 86 n n C6 C7 CER sing 87 n n C6 H61 CER sing 88 n n C6 H62 CER sing 89 n n C7 C8 CER doub 90 e n C7 H71 CER sing 91 n n C8 C9 CER sing 92 n n C8 H81 CER sing 93 n n C9 C10 CER sing 94 n n C9 H91 CER sing 95 n n C9 H92 CER sing 96 n n C10 C11 CER doub 97 e n C10 H101 CER sing 98 n n C11 C12 CER sing 99 n n C11 H111 CER sing 100 n n C12 H121 CER sing 101 n n C12 H122 CER sing 102 n n C12 H123 CER sing 103 n n # _atom_sites.entry_id 3S21 _atom_sites.fract_transf_matrix[1][1] 0.011048 _atom_sites.fract_transf_matrix[1][2] 0.006378 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 1 1 MN MN . C 3 CER A 1 359 1 CER CER . D 4 GOL A 1 360 1 GOL GOL . E 4 GOL A 1 361 1 GOL GOL . F 5 HOH A 1 2 2 HOH HOH . F 5 HOH A 2 3 3 HOH HOH . F 5 HOH A 3 4 4 HOH HOH . F 5 HOH A 4 5 5 HOH HOH . F 5 HOH A 5 6 6 HOH HOH . F 5 HOH A 6 7 7 HOH HOH . F 5 HOH A 7 8 8 HOH HOH . F 5 HOH A 8 9 9 HOH HOH . F 5 HOH A 9 10 10 HOH HOH . F 5 HOH A 10 11 11 HOH HOH . F 5 HOH A 11 12 12 HOH HOH . F 5 HOH A 12 13 13 HOH HOH . F 5 HOH A 13 362 1 HOH HOH . F 5 HOH A 14 363 14 HOH HOH . F 5 HOH A 15 364 15 HOH HOH . F 5 HOH A 16 365 16 HOH HOH . F 5 HOH A 17 366 17 HOH HOH . F 5 HOH A 18 367 18 HOH HOH . F 5 HOH A 19 368 19 HOH HOH . F 5 HOH A 20 369 20 HOH HOH . F 5 HOH A 21 370 21 HOH HOH . F 5 HOH A 22 371 22 HOH HOH . F 5 HOH A 23 372 23 HOH HOH . F 5 HOH A 24 373 24 HOH HOH . F 5 HOH A 25 374 25 HOH HOH . F 5 HOH A 26 375 26 HOH HOH . F 5 HOH A 27 376 27 HOH HOH . F 5 HOH A 28 377 28 HOH HOH . F 5 HOH A 29 378 29 HOH HOH . F 5 HOH A 30 379 30 HOH HOH . F 5 HOH A 31 380 31 HOH HOH . F 5 HOH A 32 381 32 HOH HOH . F 5 HOH A 33 382 33 HOH HOH . F 5 HOH A 34 383 34 HOH HOH . F 5 HOH A 35 384 35 HOH HOH . F 5 HOH A 36 385 36 HOH HOH . F 5 HOH A 37 386 37 HOH HOH . F 5 HOH A 38 387 38 HOH HOH . F 5 HOH A 39 388 39 HOH HOH . F 5 HOH A 40 389 40 HOH HOH . F 5 HOH A 41 390 41 HOH HOH . F 5 HOH A 42 391 42 HOH HOH . F 5 HOH A 43 392 43 HOH HOH . F 5 HOH A 44 393 44 HOH HOH . F 5 HOH A 45 394 45 HOH HOH . F 5 HOH A 46 395 46 HOH HOH . F 5 HOH A 47 396 47 HOH HOH . F 5 HOH A 48 397 48 HOH HOH . F 5 HOH A 49 398 49 HOH HOH . F 5 HOH A 50 399 50 HOH HOH . F 5 HOH A 51 400 51 HOH HOH . F 5 HOH A 52 401 52 HOH HOH . F 5 HOH A 53 402 54 HOH HOH . F 5 HOH A 54 403 55 HOH HOH . F 5 HOH A 55 404 56 HOH HOH . F 5 HOH A 56 405 57 HOH HOH . F 5 HOH A 57 406 58 HOH HOH . F 5 HOH A 58 407 59 HOH HOH . F 5 HOH A 59 408 60 HOH HOH . F 5 HOH A 60 409 61 HOH HOH . F 5 HOH A 61 410 62 HOH HOH . F 5 HOH A 62 411 63 HOH HOH . F 5 HOH A 63 412 64 HOH HOH . F 5 HOH A 64 413 65 HOH HOH . F 5 HOH A 65 414 66 HOH HOH . F 5 HOH A 66 415 67 HOH HOH . F 5 HOH A 67 416 68 HOH HOH . F 5 HOH A 68 417 69 HOH HOH . F 5 HOH A 69 418 70 HOH HOH . F 5 HOH A 70 419 71 HOH HOH . F 5 HOH A 71 420 72 HOH HOH . F 5 HOH A 72 421 73 HOH HOH . F 5 HOH A 73 422 74 HOH HOH . F 5 HOH A 74 423 75 HOH HOH . F 5 HOH A 75 424 76 HOH HOH . F 5 HOH A 76 425 77 HOH HOH . F 5 HOH A 77 426 78 HOH HOH . F 5 HOH A 78 427 79 HOH HOH . F 5 HOH A 79 428 80 HOH HOH . F 5 HOH A 80 429 81 HOH HOH . F 5 HOH A 81 430 82 HOH HOH . F 5 HOH A 82 431 83 HOH HOH . F 5 HOH A 83 432 84 HOH HOH . F 5 HOH A 84 433 85 HOH HOH . F 5 HOH A 85 434 86 HOH HOH . F 5 HOH A 86 435 87 HOH HOH . F 5 HOH A 87 436 88 HOH HOH . F 5 HOH A 88 437 89 HOH HOH . F 5 HOH A 89 438 90 HOH HOH . F 5 HOH A 90 439 91 HOH HOH . F 5 HOH A 91 440 92 HOH HOH . F 5 HOH A 92 441 93 HOH HOH . F 5 HOH A 93 442 94 HOH HOH . F 5 HOH A 94 443 95 HOH HOH . F 5 HOH A 95 444 96 HOH HOH . F 5 HOH A 96 445 97 HOH HOH . F 5 HOH A 97 446 98 HOH HOH . F 5 HOH A 98 447 99 HOH HOH . F 5 HOH A 99 448 101 HOH HOH . F 5 HOH A 100 449 102 HOH HOH . F 5 HOH A 101 450 103 HOH HOH . F 5 HOH A 102 451 104 HOH HOH . F 5 HOH A 103 452 105 HOH HOH . F 5 HOH A 104 453 106 HOH HOH . F 5 HOH A 105 454 107 HOH HOH . F 5 HOH A 106 455 108 HOH HOH . F 5 HOH A 107 456 109 HOH HOH . F 5 HOH A 108 457 110 HOH HOH . F 5 HOH A 109 458 111 HOH HOH . F 5 HOH A 110 459 112 HOH HOH . F 5 HOH A 111 460 114 HOH HOH . F 5 HOH A 112 461 116 HOH HOH . F 5 HOH A 113 462 117 HOH HOH . F 5 HOH A 114 463 118 HOH HOH . F 5 HOH A 115 464 119 HOH HOH . F 5 HOH A 116 465 120 HOH HOH . F 5 HOH A 117 466 121 HOH HOH . F 5 HOH A 118 467 123 HOH HOH . F 5 HOH A 119 468 124 HOH HOH . F 5 HOH A 120 469 125 HOH HOH . F 5 HOH A 121 470 126 HOH HOH . F 5 HOH A 122 471 127 HOH HOH . F 5 HOH A 123 472 128 HOH HOH . F 5 HOH A 124 473 129 HOH HOH . F 5 HOH A 125 474 130 HOH HOH . F 5 HOH A 126 475 131 HOH HOH . F 5 HOH A 127 476 133 HOH HOH . F 5 HOH A 128 477 134 HOH HOH . F 5 HOH A 129 478 135 HOH HOH . F 5 HOH A 130 479 136 HOH HOH . F 5 HOH A 131 480 137 HOH HOH . F 5 HOH A 132 481 138 HOH HOH . F 5 HOH A 133 482 139 HOH HOH . F 5 HOH A 134 483 140 HOH HOH . F 5 HOH A 135 484 141 HOH HOH . F 5 HOH A 136 485 142 HOH HOH . F 5 HOH A 137 486 143 HOH HOH . F 5 HOH A 138 487 144 HOH HOH . F 5 HOH A 139 488 145 HOH HOH . F 5 HOH A 140 489 146 HOH HOH . F 5 HOH A 141 490 147 HOH HOH . F 5 HOH A 142 491 149 HOH HOH . F 5 HOH A 143 492 150 HOH HOH . F 5 HOH A 144 493 152 HOH HOH . F 5 HOH A 145 494 153 HOH HOH . F 5 HOH A 146 495 154 HOH HOH . F 5 HOH A 147 496 156 HOH HOH . F 5 HOH A 148 497 157 HOH HOH . F 5 HOH A 149 498 158 HOH HOH . F 5 HOH A 150 499 159 HOH HOH . F 5 HOH A 151 500 160 HOH HOH . F 5 HOH A 152 501 161 HOH HOH . F 5 HOH A 153 502 162 HOH HOH . F 5 HOH A 154 503 164 HOH HOH . F 5 HOH A 155 504 165 HOH HOH . F 5 HOH A 156 505 166 HOH HOH . F 5 HOH A 157 506 167 HOH HOH . F 5 HOH A 158 507 168 HOH HOH . F 5 HOH A 159 508 169 HOH HOH . F 5 HOH A 160 509 170 HOH HOH . F 5 HOH A 161 510 171 HOH HOH . F 5 HOH A 162 511 173 HOH HOH . F 5 HOH A 163 512 174 HOH HOH . F 5 HOH A 164 513 175 HOH HOH . F 5 HOH A 165 514 176 HOH HOH . F 5 HOH A 166 515 177 HOH HOH . F 5 HOH A 167 516 178 HOH HOH . F 5 HOH A 168 517 180 HOH HOH . F 5 HOH A 169 518 181 HOH HOH . F 5 HOH A 170 519 183 HOH HOH . F 5 HOH A 171 520 184 HOH HOH . F 5 HOH A 172 521 185 HOH HOH . F 5 HOH A 173 522 186 HOH HOH . F 5 HOH A 174 523 187 HOH HOH . F 5 HOH A 175 524 189 HOH HOH . F 5 HOH A 176 525 190 HOH HOH . F 5 HOH A 177 526 192 HOH HOH . F 5 HOH A 178 527 193 HOH HOH . F 5 HOH A 179 528 194 HOH HOH . F 5 HOH A 180 529 195 HOH HOH . F 5 HOH A 181 530 196 HOH HOH . F 5 HOH A 182 531 197 HOH HOH . F 5 HOH A 183 532 198 HOH HOH . F 5 HOH A 184 533 199 HOH HOH . F 5 HOH A 185 534 201 HOH HOH . F 5 HOH A 186 535 202 HOH HOH . F 5 HOH A 187 536 203 HOH HOH . F 5 HOH A 188 537 205 HOH HOH . F 5 HOH A 189 538 206 HOH HOH . F 5 HOH A 190 539 207 HOH HOH . F 5 HOH A 191 540 209 HOH HOH . F 5 HOH A 192 541 210 HOH HOH . F 5 HOH A 193 542 211 HOH HOH . F 5 HOH A 194 543 212 HOH HOH . F 5 HOH A 195 544 213 HOH HOH . F 5 HOH A 196 545 215 HOH HOH . F 5 HOH A 197 546 216 HOH HOH . F 5 HOH A 198 547 217 HOH HOH . F 5 HOH A 199 548 218 HOH HOH . F 5 HOH A 200 549 219 HOH HOH . F 5 HOH A 201 550 3 HOH HOH . F 5 HOH A 202 551 5 HOH HOH . F 5 HOH A 203 552 3 HOH HOH . F 5 HOH A 204 553 4 HOH HOH . F 5 HOH A 205 554 5 HOH HOH . F 5 HOH A 206 555 7 HOH HOH . F 5 HOH A 207 556 20 HOH HOH . F 5 HOH A 208 557 27 HOH HOH . F 5 HOH A 209 558 1 HOH HOH . F 5 HOH A 210 559 2 HOH HOH . F 5 HOH A 211 560 1 HOH HOH . F 5 HOH A 212 561 2 HOH HOH . F 5 HOH A 213 562 1 HOH HOH . F 5 HOH A 214 563 2 HOH HOH . F 5 HOH A 215 564 3 HOH HOH . F 5 HOH A 216 565 4 HOH HOH . F 5 HOH A 217 566 5 HOH HOH . F 5 HOH A 218 567 6 HOH HOH . F 5 HOH A 219 568 7 HOH HOH . F 5 HOH A 220 569 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . C 3 52.787 -6.622 -1.092 1 26.67 ? C1 CER 359 A 1 HETATM 2 N N1 CER . . . C 3 53.548 -7.81 -0.95 1 29.8 ? N1 CER 359 A 1 HETATM 3 O O1 CER . . . C 3 55.638 -7.841 -2.209 1 33.03 ? O1 CER 359 A 1 HETATM 4 C C2 CER . . . C 3 53.095 -5.676 -2.196 1 30.24 ? C2 CER 359 A 1 HETATM 5 O O2 CER . . . C 3 51.891 -6.43 -0.305 1 24.77 ? O2 CER 359 A 1 HETATM 6 C C3 CER . . . C 3 54.388 -5.956 -2.893 1 32.3 ? C3 CER 359 A 1 HETATM 7 O O3 CER . . . C 3 54.286 -5.537 -4.19 1 28.62 ? O3 CER 359 A 1 HETATM 8 C C4 CER . . . C 3 54.699 -7.419 -2.891 1 36.69 ? C4 CER 359 A 1 HETATM 9 C C5 CER . . . C 3 53.857 -8.345 -3.717 1 30.27 ? C5 CER 359 A 1 HETATM 10 C C6 CER . . . C 3 53.688 -9.77 -3.294 1 28.89 ? C6 CER 359 A 1 HETATM 11 C C7 CER . . . C 3 53.539 -10.657 -4.497 1 33.74 ? C7 CER 359 A 1 HETATM 12 C C8 CER . . . C 3 52.383 -11.343 -4.777 1 34.57 ? C8 CER 359 A 1 HETATM 13 C C9 CER . . . C 3 52.301 -12.228 -5.983 1 33.66 ? C9 CER 359 A 1 HETATM 14 C C10 CER . . . C 3 51.285 -11.712 -6.951 1 38.66 ? C10 CER 359 A 1 HETATM 15 C C11 CER . . . C 3 50.844 -12.482 -7.993 1 41.06 ? C11 CER 359 A 1 HETATM 16 C C12 CER . . . C 3 49.957 -11.891 -9.046 1 35.99 ? C12 CER 359 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #