data_3S21
#
_model_server_result.job_id            Ti2x7EgM4piPdfX9ZMpokw 
_model_server_result.datetime_utc      '2024-11-28 03:24:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3s21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":360}' 
#
_entry.id    3S21 
#
_exptl.entry_id    3S21 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3S21 
_cell.length_a            90.516 
_cell.length_b            90.516 
_cell.length_c            69.793 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3S21 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.264333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B MN MN . A MN 1 1_555 A ND1 HIS 25 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 63 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 163 n n 
C1 C2 GOL sing 164 n n 
C1 H11 GOL sing 165 n n 
C1 H12 GOL sing 166 n n 
O1 HO1 GOL sing 167 n n 
C2 O2 GOL sing 168 n n 
C2 C3 GOL sing 169 n n 
C2 H2 GOL sing 170 n n 
O2 HO2 GOL sing 171 n n 
C3 O3 GOL sing 172 n n 
C3 H31 GOL sing 173 n n 
C3 H32 GOL sing 174 n n 
O3 HO3 GOL sing 175 n n 
#
_atom_sites.entry_id                     3S21 
_atom_sites.fract_transf_matrix[1][1]    0.011048 
_atom_sites.fract_transf_matrix[1][2]    0.006378 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014328 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 1 1 MN MN . 
C 3 CER A 1 359 1 CER CER . 
D 4 GOL A 1 360 1 GOL GOL . 
E 4 GOL A 1 361 1 GOL GOL . 
F 5 HOH A 1 2 2 HOH HOH . 
F 5 HOH A 2 3 3 HOH HOH . 
F 5 HOH A 3 4 4 HOH HOH . 
F 5 HOH A 4 5 5 HOH HOH . 
F 5 HOH A 5 6 6 HOH HOH . 
F 5 HOH A 6 7 7 HOH HOH . 
F 5 HOH A 7 8 8 HOH HOH . 
F 5 HOH A 8 9 9 HOH HOH . 
F 5 HOH A 9 10 10 HOH HOH . 
F 5 HOH A 10 11 11 HOH HOH . 
F 5 HOH A 11 12 12 HOH HOH . 
F 5 HOH A 12 13 13 HOH HOH . 
F 5 HOH A 13 362 1 HOH HOH . 
F 5 HOH A 14 363 14 HOH HOH . 
F 5 HOH A 15 364 15 HOH HOH . 
F 5 HOH A 16 365 16 HOH HOH . 
F 5 HOH A 17 366 17 HOH HOH . 
F 5 HOH A 18 367 18 HOH HOH . 
F 5 HOH A 19 368 19 HOH HOH . 
F 5 HOH A 20 369 20 HOH HOH . 
F 5 HOH A 21 370 21 HOH HOH . 
F 5 HOH A 22 371 22 HOH HOH . 
F 5 HOH A 23 372 23 HOH HOH . 
F 5 HOH A 24 373 24 HOH HOH . 
F 5 HOH A 25 374 25 HOH HOH . 
F 5 HOH A 26 375 26 HOH HOH . 
F 5 HOH A 27 376 27 HOH HOH . 
F 5 HOH A 28 377 28 HOH HOH . 
F 5 HOH A 29 378 29 HOH HOH . 
F 5 HOH A 30 379 30 HOH HOH . 
F 5 HOH A 31 380 31 HOH HOH . 
F 5 HOH A 32 381 32 HOH HOH . 
F 5 HOH A 33 382 33 HOH HOH . 
F 5 HOH A 34 383 34 HOH HOH . 
F 5 HOH A 35 384 35 HOH HOH . 
F 5 HOH A 36 385 36 HOH HOH . 
F 5 HOH A 37 386 37 HOH HOH . 
F 5 HOH A 38 387 38 HOH HOH . 
F 5 HOH A 39 388 39 HOH HOH . 
F 5 HOH A 40 389 40 HOH HOH . 
F 5 HOH A 41 390 41 HOH HOH . 
F 5 HOH A 42 391 42 HOH HOH . 
F 5 HOH A 43 392 43 HOH HOH . 
F 5 HOH A 44 393 44 HOH HOH . 
F 5 HOH A 45 394 45 HOH HOH . 
F 5 HOH A 46 395 46 HOH HOH . 
F 5 HOH A 47 396 47 HOH HOH . 
F 5 HOH A 48 397 48 HOH HOH . 
F 5 HOH A 49 398 49 HOH HOH . 
F 5 HOH A 50 399 50 HOH HOH . 
F 5 HOH A 51 400 51 HOH HOH . 
F 5 HOH A 52 401 52 HOH HOH . 
F 5 HOH A 53 402 54 HOH HOH . 
F 5 HOH A 54 403 55 HOH HOH . 
F 5 HOH A 55 404 56 HOH HOH . 
F 5 HOH A 56 405 57 HOH HOH . 
F 5 HOH A 57 406 58 HOH HOH . 
F 5 HOH A 58 407 59 HOH HOH . 
F 5 HOH A 59 408 60 HOH HOH . 
F 5 HOH A 60 409 61 HOH HOH . 
F 5 HOH A 61 410 62 HOH HOH . 
F 5 HOH A 62 411 63 HOH HOH . 
F 5 HOH A 63 412 64 HOH HOH . 
F 5 HOH A 64 413 65 HOH HOH . 
F 5 HOH A 65 414 66 HOH HOH . 
F 5 HOH A 66 415 67 HOH HOH . 
F 5 HOH A 67 416 68 HOH HOH . 
F 5 HOH A 68 417 69 HOH HOH . 
F 5 HOH A 69 418 70 HOH HOH . 
F 5 HOH A 70 419 71 HOH HOH . 
F 5 HOH A 71 420 72 HOH HOH . 
F 5 HOH A 72 421 73 HOH HOH . 
F 5 HOH A 73 422 74 HOH HOH . 
F 5 HOH A 74 423 75 HOH HOH . 
F 5 HOH A 75 424 76 HOH HOH . 
F 5 HOH A 76 425 77 HOH HOH . 
F 5 HOH A 77 426 78 HOH HOH . 
F 5 HOH A 78 427 79 HOH HOH . 
F 5 HOH A 79 428 80 HOH HOH . 
F 5 HOH A 80 429 81 HOH HOH . 
F 5 HOH A 81 430 82 HOH HOH . 
F 5 HOH A 82 431 83 HOH HOH . 
F 5 HOH A 83 432 84 HOH HOH . 
F 5 HOH A 84 433 85 HOH HOH . 
F 5 HOH A 85 434 86 HOH HOH . 
F 5 HOH A 86 435 87 HOH HOH . 
F 5 HOH A 87 436 88 HOH HOH . 
F 5 HOH A 88 437 89 HOH HOH . 
F 5 HOH A 89 438 90 HOH HOH . 
F 5 HOH A 90 439 91 HOH HOH . 
F 5 HOH A 91 440 92 HOH HOH . 
F 5 HOH A 92 441 93 HOH HOH . 
F 5 HOH A 93 442 94 HOH HOH . 
F 5 HOH A 94 443 95 HOH HOH . 
F 5 HOH A 95 444 96 HOH HOH . 
F 5 HOH A 96 445 97 HOH HOH . 
F 5 HOH A 97 446 98 HOH HOH . 
F 5 HOH A 98 447 99 HOH HOH . 
F 5 HOH A 99 448 101 HOH HOH . 
F 5 HOH A 100 449 102 HOH HOH . 
F 5 HOH A 101 450 103 HOH HOH . 
F 5 HOH A 102 451 104 HOH HOH . 
F 5 HOH A 103 452 105 HOH HOH . 
F 5 HOH A 104 453 106 HOH HOH . 
F 5 HOH A 105 454 107 HOH HOH . 
F 5 HOH A 106 455 108 HOH HOH . 
F 5 HOH A 107 456 109 HOH HOH . 
F 5 HOH A 108 457 110 HOH HOH . 
F 5 HOH A 109 458 111 HOH HOH . 
F 5 HOH A 110 459 112 HOH HOH . 
F 5 HOH A 111 460 114 HOH HOH . 
F 5 HOH A 112 461 116 HOH HOH . 
F 5 HOH A 113 462 117 HOH HOH . 
F 5 HOH A 114 463 118 HOH HOH . 
F 5 HOH A 115 464 119 HOH HOH . 
F 5 HOH A 116 465 120 HOH HOH . 
F 5 HOH A 117 466 121 HOH HOH . 
F 5 HOH A 118 467 123 HOH HOH . 
F 5 HOH A 119 468 124 HOH HOH . 
F 5 HOH A 120 469 125 HOH HOH . 
F 5 HOH A 121 470 126 HOH HOH . 
F 5 HOH A 122 471 127 HOH HOH . 
F 5 HOH A 123 472 128 HOH HOH . 
F 5 HOH A 124 473 129 HOH HOH . 
F 5 HOH A 125 474 130 HOH HOH . 
F 5 HOH A 126 475 131 HOH HOH . 
F 5 HOH A 127 476 133 HOH HOH . 
F 5 HOH A 128 477 134 HOH HOH . 
F 5 HOH A 129 478 135 HOH HOH . 
F 5 HOH A 130 479 136 HOH HOH . 
F 5 HOH A 131 480 137 HOH HOH . 
F 5 HOH A 132 481 138 HOH HOH . 
F 5 HOH A 133 482 139 HOH HOH . 
F 5 HOH A 134 483 140 HOH HOH . 
F 5 HOH A 135 484 141 HOH HOH . 
F 5 HOH A 136 485 142 HOH HOH . 
F 5 HOH A 137 486 143 HOH HOH . 
F 5 HOH A 138 487 144 HOH HOH . 
F 5 HOH A 139 488 145 HOH HOH . 
F 5 HOH A 140 489 146 HOH HOH . 
F 5 HOH A 141 490 147 HOH HOH . 
F 5 HOH A 142 491 149 HOH HOH . 
F 5 HOH A 143 492 150 HOH HOH . 
F 5 HOH A 144 493 152 HOH HOH . 
F 5 HOH A 145 494 153 HOH HOH . 
F 5 HOH A 146 495 154 HOH HOH . 
F 5 HOH A 147 496 156 HOH HOH . 
F 5 HOH A 148 497 157 HOH HOH . 
F 5 HOH A 149 498 158 HOH HOH . 
F 5 HOH A 150 499 159 HOH HOH . 
F 5 HOH A 151 500 160 HOH HOH . 
F 5 HOH A 152 501 161 HOH HOH . 
F 5 HOH A 153 502 162 HOH HOH . 
F 5 HOH A 154 503 164 HOH HOH . 
F 5 HOH A 155 504 165 HOH HOH . 
F 5 HOH A 156 505 166 HOH HOH . 
F 5 HOH A 157 506 167 HOH HOH . 
F 5 HOH A 158 507 168 HOH HOH . 
F 5 HOH A 159 508 169 HOH HOH . 
F 5 HOH A 160 509 170 HOH HOH . 
F 5 HOH A 161 510 171 HOH HOH . 
F 5 HOH A 162 511 173 HOH HOH . 
F 5 HOH A 163 512 174 HOH HOH . 
F 5 HOH A 164 513 175 HOH HOH . 
F 5 HOH A 165 514 176 HOH HOH . 
F 5 HOH A 166 515 177 HOH HOH . 
F 5 HOH A 167 516 178 HOH HOH . 
F 5 HOH A 168 517 180 HOH HOH . 
F 5 HOH A 169 518 181 HOH HOH . 
F 5 HOH A 170 519 183 HOH HOH . 
F 5 HOH A 171 520 184 HOH HOH . 
F 5 HOH A 172 521 185 HOH HOH . 
F 5 HOH A 173 522 186 HOH HOH . 
F 5 HOH A 174 523 187 HOH HOH . 
F 5 HOH A 175 524 189 HOH HOH . 
F 5 HOH A 176 525 190 HOH HOH . 
F 5 HOH A 177 526 192 HOH HOH . 
F 5 HOH A 178 527 193 HOH HOH . 
F 5 HOH A 179 528 194 HOH HOH . 
F 5 HOH A 180 529 195 HOH HOH . 
F 5 HOH A 181 530 196 HOH HOH . 
F 5 HOH A 182 531 197 HOH HOH . 
F 5 HOH A 183 532 198 HOH HOH . 
F 5 HOH A 184 533 199 HOH HOH . 
F 5 HOH A 185 534 201 HOH HOH . 
F 5 HOH A 186 535 202 HOH HOH . 
F 5 HOH A 187 536 203 HOH HOH . 
F 5 HOH A 188 537 205 HOH HOH . 
F 5 HOH A 189 538 206 HOH HOH . 
F 5 HOH A 190 539 207 HOH HOH . 
F 5 HOH A 191 540 209 HOH HOH . 
F 5 HOH A 192 541 210 HOH HOH . 
F 5 HOH A 193 542 211 HOH HOH . 
F 5 HOH A 194 543 212 HOH HOH . 
F 5 HOH A 195 544 213 HOH HOH . 
F 5 HOH A 196 545 215 HOH HOH . 
F 5 HOH A 197 546 216 HOH HOH . 
F 5 HOH A 198 547 217 HOH HOH . 
F 5 HOH A 199 548 218 HOH HOH . 
F 5 HOH A 200 549 219 HOH HOH . 
F 5 HOH A 201 550 3 HOH HOH . 
F 5 HOH A 202 551 5 HOH HOH . 
F 5 HOH A 203 552 3 HOH HOH . 
F 5 HOH A 204 553 4 HOH HOH . 
F 5 HOH A 205 554 5 HOH HOH . 
F 5 HOH A 206 555 7 HOH HOH . 
F 5 HOH A 207 556 20 HOH HOH . 
F 5 HOH A 208 557 27 HOH HOH . 
F 5 HOH A 209 558 1 HOH HOH . 
F 5 HOH A 210 559 2 HOH HOH . 
F 5 HOH A 211 560 1 HOH HOH . 
F 5 HOH A 212 561 2 HOH HOH . 
F 5 HOH A 213 562 1 HOH HOH . 
F 5 HOH A 214 563 2 HOH HOH . 
F 5 HOH A 215 564 3 HOH HOH . 
F 5 HOH A 216 565 4 HOH HOH . 
F 5 HOH A 217 566 5 HOH HOH . 
F 5 HOH A 218 567 6 HOH HOH . 
F 5 HOH A 219 568 7 HOH HOH . 
F 5 HOH A 220 569 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 44.497 -22.739 -0.108 1 45.5 ? C1 GOL 360 A 1 
HETATM 2 O O1 GOL . . . D 4 44.227 -22.204 -1.387 1 40.41 ? O1 GOL 360 A 1 
HETATM 3 C C2 GOL . . . D 4 45.854 -23.441 -0.108 1 50.06 ? C2 GOL 360 A 1 
HETATM 4 O O2 GOL . . . D 4 46.678 -22.938 0.927 1 47.85 ? O2 GOL 360 A 1 
HETATM 5 C C3 GOL . . . D 4 46.538 -23.236 -1.453 1 46.36 ? C3 GOL 360 A 1 
HETATM 6 O O3 GOL . . . D 4 47.836 -23.786 -1.413 1 45.07 ? O3 GOL 360 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#