data_3S23 # _model_server_result.job_id 5QVtiKSZyewOCIhkV5UV8A _model_server_result.datetime_utc '2024-11-06 05:49:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":359}' # _entry.id 3S23 # _exptl.entry_id 3S23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 225.284 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S23 _cell.length_a 90.027 _cell.length_b 90.027 _cell.length_c 69.513 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.171 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MN MN . A MN 1 1_555 A ND1 HIS 25 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 63 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C12 H19 N O3' _chem_comp.formula_weight 225.284 _chem_comp.id CER _chem_comp.mon_nstd_flag . _chem_comp.name '(2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CERULENIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 CER sing 70 n n C1 C2 CER sing 71 n n C1 O2 CER doub 72 n n N1 HN11 CER sing 73 n n N1 HN12 CER sing 74 n n O1 C4 CER doub 75 n n C2 C3 CER sing 76 n n C2 H21 CER sing 77 n n C2 H22 CER sing 78 n n C3 O3 CER sing 79 n n C3 C4 CER sing 80 n n C3 H31 CER sing 81 n n O3 HO3 CER sing 82 n n C4 C5 CER sing 83 n n C5 C6 CER sing 84 n n C5 H51 CER sing 85 n n C5 H52 CER sing 86 n n C6 C7 CER sing 87 n n C6 H61 CER sing 88 n n C6 H62 CER sing 89 n n C7 C8 CER doub 90 e n C7 H71 CER sing 91 n n C8 C9 CER sing 92 n n C8 H81 CER sing 93 n n C9 C10 CER sing 94 n n C9 H91 CER sing 95 n n C9 H92 CER sing 96 n n C10 C11 CER doub 97 e n C10 H101 CER sing 98 n n C11 C12 CER sing 99 n n C11 H111 CER sing 100 n n C12 H121 CER sing 101 n n C12 H122 CER sing 102 n n C12 H123 CER sing 103 n n # _atom_sites.entry_id 3S23 _atom_sites.fract_transf_matrix[1][1] 0.011108 _atom_sites.fract_transf_matrix[1][2] 0.006413 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 1 1 MN MN . C 2 MN A 1 364 1 MN MN . D 3 CER A 1 359 1 CER CER . E 4 GOL A 1 360 1 GOL GOL . F 4 GOL A 1 361 1 GOL GOL . G 5 XE A 1 362 1 XE XE . H 5 XE A 1 363 1 XE XE . I 6 HOH A 1 2 2 HOH HOH . I 6 HOH A 2 3 3 HOH HOH . I 6 HOH A 3 4 4 HOH HOH . I 6 HOH A 4 5 5 HOH HOH . I 6 HOH A 5 6 6 HOH HOH . I 6 HOH A 6 7 7 HOH HOH . I 6 HOH A 7 8 8 HOH HOH . I 6 HOH A 8 9 9 HOH HOH . I 6 HOH A 9 10 10 HOH HOH . I 6 HOH A 10 11 11 HOH HOH . I 6 HOH A 11 12 12 HOH HOH . I 6 HOH A 12 13 13 HOH HOH . I 6 HOH A 13 365 1 HOH HOH . I 6 HOH A 14 366 14 HOH HOH . I 6 HOH A 15 367 15 HOH HOH . I 6 HOH A 16 368 16 HOH HOH . I 6 HOH A 17 369 17 HOH HOH . I 6 HOH A 18 370 18 HOH HOH . I 6 HOH A 19 371 19 HOH HOH . I 6 HOH A 20 372 20 HOH HOH . I 6 HOH A 21 373 21 HOH HOH . I 6 HOH A 22 374 22 HOH HOH . I 6 HOH A 23 375 23 HOH HOH . I 6 HOH A 24 376 24 HOH HOH . I 6 HOH A 25 377 25 HOH HOH . I 6 HOH A 26 378 26 HOH HOH . I 6 HOH A 27 379 27 HOH HOH . I 6 HOH A 28 380 28 HOH HOH . I 6 HOH A 29 381 29 HOH HOH . I 6 HOH A 30 382 30 HOH HOH . I 6 HOH A 31 383 31 HOH HOH . I 6 HOH A 32 384 32 HOH HOH . I 6 HOH A 33 385 33 HOH HOH . I 6 HOH A 34 386 34 HOH HOH . I 6 HOH A 35 387 35 HOH HOH . I 6 HOH A 36 388 36 HOH HOH . I 6 HOH A 37 389 37 HOH HOH . I 6 HOH A 38 390 38 HOH HOH . I 6 HOH A 39 391 39 HOH HOH . I 6 HOH A 40 392 40 HOH HOH . I 6 HOH A 41 393 41 HOH HOH . I 6 HOH A 42 394 42 HOH HOH . I 6 HOH A 43 395 43 HOH HOH . I 6 HOH A 44 396 44 HOH HOH . I 6 HOH A 45 397 45 HOH HOH . I 6 HOH A 46 398 46 HOH HOH . I 6 HOH A 47 399 47 HOH HOH . I 6 HOH A 48 400 48 HOH HOH . I 6 HOH A 49 401 49 HOH HOH . I 6 HOH A 50 402 50 HOH HOH . I 6 HOH A 51 403 51 HOH HOH . I 6 HOH A 52 404 52 HOH HOH . I 6 HOH A 53 405 53 HOH HOH . I 6 HOH A 54 406 54 HOH HOH . I 6 HOH A 55 407 55 HOH HOH . I 6 HOH A 56 408 56 HOH HOH . I 6 HOH A 57 409 57 HOH HOH . I 6 HOH A 58 410 58 HOH HOH . I 6 HOH A 59 411 59 HOH HOH . I 6 HOH A 60 412 60 HOH HOH . I 6 HOH A 61 413 61 HOH HOH . I 6 HOH A 62 414 62 HOH HOH . I 6 HOH A 63 415 63 HOH HOH . I 6 HOH A 64 416 64 HOH HOH . I 6 HOH A 65 417 65 HOH HOH . I 6 HOH A 66 418 66 HOH HOH . I 6 HOH A 67 419 68 HOH HOH . I 6 HOH A 68 420 69 HOH HOH . I 6 HOH A 69 421 70 HOH HOH . I 6 HOH A 70 422 71 HOH HOH . I 6 HOH A 71 423 72 HOH HOH . I 6 HOH A 72 424 73 HOH HOH . I 6 HOH A 73 425 74 HOH HOH . I 6 HOH A 74 426 75 HOH HOH . I 6 HOH A 75 427 76 HOH HOH . I 6 HOH A 76 428 78 HOH HOH . I 6 HOH A 77 429 79 HOH HOH . I 6 HOH A 78 430 80 HOH HOH . I 6 HOH A 79 431 81 HOH HOH . I 6 HOH A 80 432 82 HOH HOH . I 6 HOH A 81 433 83 HOH HOH . I 6 HOH A 82 434 84 HOH HOH . I 6 HOH A 83 435 85 HOH HOH . I 6 HOH A 84 436 86 HOH HOH . I 6 HOH A 85 437 88 HOH HOH . I 6 HOH A 86 438 89 HOH HOH . I 6 HOH A 87 439 90 HOH HOH . I 6 HOH A 88 440 91 HOH HOH . I 6 HOH A 89 441 92 HOH HOH . I 6 HOH A 90 442 93 HOH HOH . I 6 HOH A 91 443 94 HOH HOH . I 6 HOH A 92 444 95 HOH HOH . I 6 HOH A 93 445 96 HOH HOH . I 6 HOH A 94 446 97 HOH HOH . I 6 HOH A 95 447 98 HOH HOH . I 6 HOH A 96 448 99 HOH HOH . I 6 HOH A 97 449 100 HOH HOH . I 6 HOH A 98 450 101 HOH HOH . I 6 HOH A 99 451 102 HOH HOH . I 6 HOH A 100 452 103 HOH HOH . I 6 HOH A 101 453 104 HOH HOH . I 6 HOH A 102 454 105 HOH HOH . I 6 HOH A 103 455 106 HOH HOH . I 6 HOH A 104 456 107 HOH HOH . I 6 HOH A 105 457 108 HOH HOH . I 6 HOH A 106 458 109 HOH HOH . I 6 HOH A 107 459 110 HOH HOH . I 6 HOH A 108 460 111 HOH HOH . I 6 HOH A 109 461 112 HOH HOH . I 6 HOH A 110 462 113 HOH HOH . I 6 HOH A 111 463 114 HOH HOH . I 6 HOH A 112 464 115 HOH HOH . I 6 HOH A 113 465 116 HOH HOH . I 6 HOH A 114 466 118 HOH HOH . I 6 HOH A 115 467 119 HOH HOH . I 6 HOH A 116 468 120 HOH HOH . I 6 HOH A 117 469 121 HOH HOH . I 6 HOH A 118 470 122 HOH HOH . I 6 HOH A 119 471 123 HOH HOH . I 6 HOH A 120 472 124 HOH HOH . I 6 HOH A 121 473 125 HOH HOH . I 6 HOH A 122 474 126 HOH HOH . I 6 HOH A 123 475 127 HOH HOH . I 6 HOH A 124 476 128 HOH HOH . I 6 HOH A 125 477 129 HOH HOH . I 6 HOH A 126 478 130 HOH HOH . I 6 HOH A 127 479 1 HOH HOH . I 6 HOH A 128 480 2 HOH HOH . I 6 HOH A 129 481 3 HOH HOH . I 6 HOH A 130 482 4 HOH HOH . I 6 HOH A 131 483 5 HOH HOH . I 6 HOH A 132 484 6 HOH HOH . I 6 HOH A 133 485 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CER . . . D 3 52.475 -6.634 -1.065 1 37.3 ? C1 CER 359 A 1 HETATM 2 N N1 CER . . . D 3 53.142 -7.881 -0.927 1 40.56 ? N1 CER 359 A 1 HETATM 3 O O1 CER . . . D 3 55.234 -7.993 -2.227 1 42.29 ? O1 CER 359 A 1 HETATM 4 C C2 CER . . . D 3 52.867 -5.689 -2.136 1 37.62 ? C2 CER 359 A 1 HETATM 5 O O2 CER . . . D 3 51.58 -6.37 -0.293 1 30.8 ? O2 CER 359 A 1 HETATM 6 C C3 CER . . . D 3 54.135 -6.019 -2.853 1 38.44 ? C3 CER 359 A 1 HETATM 7 O O3 CER . . . D 3 54.061 -5.5 -4.116 1 33.09 ? O3 CER 359 A 1 HETATM 8 C C4 CER . . . D 3 54.333 -7.502 -2.899 1 43.91 ? C4 CER 359 A 1 HETATM 9 C C5 CER . . . D 3 53.432 -8.375 -3.726 1 42.47 ? C5 CER 359 A 1 HETATM 10 C C6 CER . . . D 3 53.257 -9.823 -3.375 1 42.16 ? C6 CER 359 A 1 HETATM 11 C C7 CER . . . D 3 53.148 -10.646 -4.624 1 48.43 ? C7 CER 359 A 1 HETATM 12 C C8 CER . . . D 3 52.1 -11.506 -4.824 1 49.4 ? C8 CER 359 A 1 HETATM 13 C C9 CER . . . D 3 51.98 -12.283 -6.095 1 46.87 ? C9 CER 359 A 1 HETATM 14 C C10 CER . . . D 3 50.925 -11.706 -6.982 1 48.79 ? C10 CER 359 A 1 HETATM 15 C C11 CER . . . D 3 50.385 -12.467 -7.986 1 48.9 ? C11 CER 359 A 1 HETATM 16 C C12 CER . . . D 3 49.622 -11.826 -9.102 1 48.56 ? C12 CER 359 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #