data_3S23 # _model_server_result.job_id wvZDsmsr5T2I_LPdeeAnKA _model_server_result.datetime_utc '2024-11-24 11:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":361}' # _entry.id 3S23 # _exptl.entry_id 3S23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3S23 _cell.length_a 90.027 _cell.length_b 90.027 _cell.length_c 69.513 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 23.171 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MN MN . A MN 1 1_555 A ND1 HIS 25 A HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 B MN MN . A MN 1 1_555 A OD1 ASP 63 A ASP 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 3S23 _atom_sites.fract_transf_matrix[1][1] 0.011108 _atom_sites.fract_transf_matrix[1][2] 0.006413 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014386 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 1 1 MN MN . C 2 MN A 1 364 1 MN MN . D 3 CER A 1 359 1 CER CER . E 4 GOL A 1 360 1 GOL GOL . F 4 GOL A 1 361 1 GOL GOL . G 5 XE A 1 362 1 XE XE . H 5 XE A 1 363 1 XE XE . I 6 HOH A 1 2 2 HOH HOH . I 6 HOH A 2 3 3 HOH HOH . I 6 HOH A 3 4 4 HOH HOH . I 6 HOH A 4 5 5 HOH HOH . I 6 HOH A 5 6 6 HOH HOH . I 6 HOH A 6 7 7 HOH HOH . I 6 HOH A 7 8 8 HOH HOH . I 6 HOH A 8 9 9 HOH HOH . I 6 HOH A 9 10 10 HOH HOH . I 6 HOH A 10 11 11 HOH HOH . I 6 HOH A 11 12 12 HOH HOH . I 6 HOH A 12 13 13 HOH HOH . I 6 HOH A 13 365 1 HOH HOH . I 6 HOH A 14 366 14 HOH HOH . I 6 HOH A 15 367 15 HOH HOH . I 6 HOH A 16 368 16 HOH HOH . I 6 HOH A 17 369 17 HOH HOH . I 6 HOH A 18 370 18 HOH HOH . I 6 HOH A 19 371 19 HOH HOH . I 6 HOH A 20 372 20 HOH HOH . I 6 HOH A 21 373 21 HOH HOH . I 6 HOH A 22 374 22 HOH HOH . I 6 HOH A 23 375 23 HOH HOH . I 6 HOH A 24 376 24 HOH HOH . I 6 HOH A 25 377 25 HOH HOH . I 6 HOH A 26 378 26 HOH HOH . I 6 HOH A 27 379 27 HOH HOH . I 6 HOH A 28 380 28 HOH HOH . I 6 HOH A 29 381 29 HOH HOH . I 6 HOH A 30 382 30 HOH HOH . I 6 HOH A 31 383 31 HOH HOH . I 6 HOH A 32 384 32 HOH HOH . I 6 HOH A 33 385 33 HOH HOH . I 6 HOH A 34 386 34 HOH HOH . I 6 HOH A 35 387 35 HOH HOH . I 6 HOH A 36 388 36 HOH HOH . I 6 HOH A 37 389 37 HOH HOH . I 6 HOH A 38 390 38 HOH HOH . I 6 HOH A 39 391 39 HOH HOH . I 6 HOH A 40 392 40 HOH HOH . I 6 HOH A 41 393 41 HOH HOH . I 6 HOH A 42 394 42 HOH HOH . I 6 HOH A 43 395 43 HOH HOH . I 6 HOH A 44 396 44 HOH HOH . I 6 HOH A 45 397 45 HOH HOH . I 6 HOH A 46 398 46 HOH HOH . I 6 HOH A 47 399 47 HOH HOH . I 6 HOH A 48 400 48 HOH HOH . I 6 HOH A 49 401 49 HOH HOH . I 6 HOH A 50 402 50 HOH HOH . I 6 HOH A 51 403 51 HOH HOH . I 6 HOH A 52 404 52 HOH HOH . I 6 HOH A 53 405 53 HOH HOH . I 6 HOH A 54 406 54 HOH HOH . I 6 HOH A 55 407 55 HOH HOH . I 6 HOH A 56 408 56 HOH HOH . I 6 HOH A 57 409 57 HOH HOH . I 6 HOH A 58 410 58 HOH HOH . I 6 HOH A 59 411 59 HOH HOH . I 6 HOH A 60 412 60 HOH HOH . I 6 HOH A 61 413 61 HOH HOH . I 6 HOH A 62 414 62 HOH HOH . I 6 HOH A 63 415 63 HOH HOH . I 6 HOH A 64 416 64 HOH HOH . I 6 HOH A 65 417 65 HOH HOH . I 6 HOH A 66 418 66 HOH HOH . I 6 HOH A 67 419 68 HOH HOH . I 6 HOH A 68 420 69 HOH HOH . I 6 HOH A 69 421 70 HOH HOH . I 6 HOH A 70 422 71 HOH HOH . I 6 HOH A 71 423 72 HOH HOH . I 6 HOH A 72 424 73 HOH HOH . I 6 HOH A 73 425 74 HOH HOH . I 6 HOH A 74 426 75 HOH HOH . I 6 HOH A 75 427 76 HOH HOH . I 6 HOH A 76 428 78 HOH HOH . I 6 HOH A 77 429 79 HOH HOH . I 6 HOH A 78 430 80 HOH HOH . I 6 HOH A 79 431 81 HOH HOH . I 6 HOH A 80 432 82 HOH HOH . I 6 HOH A 81 433 83 HOH HOH . I 6 HOH A 82 434 84 HOH HOH . I 6 HOH A 83 435 85 HOH HOH . I 6 HOH A 84 436 86 HOH HOH . I 6 HOH A 85 437 88 HOH HOH . I 6 HOH A 86 438 89 HOH HOH . I 6 HOH A 87 439 90 HOH HOH . I 6 HOH A 88 440 91 HOH HOH . I 6 HOH A 89 441 92 HOH HOH . I 6 HOH A 90 442 93 HOH HOH . I 6 HOH A 91 443 94 HOH HOH . I 6 HOH A 92 444 95 HOH HOH . I 6 HOH A 93 445 96 HOH HOH . I 6 HOH A 94 446 97 HOH HOH . I 6 HOH A 95 447 98 HOH HOH . I 6 HOH A 96 448 99 HOH HOH . I 6 HOH A 97 449 100 HOH HOH . I 6 HOH A 98 450 101 HOH HOH . I 6 HOH A 99 451 102 HOH HOH . I 6 HOH A 100 452 103 HOH HOH . I 6 HOH A 101 453 104 HOH HOH . I 6 HOH A 102 454 105 HOH HOH . I 6 HOH A 103 455 106 HOH HOH . I 6 HOH A 104 456 107 HOH HOH . I 6 HOH A 105 457 108 HOH HOH . I 6 HOH A 106 458 109 HOH HOH . I 6 HOH A 107 459 110 HOH HOH . I 6 HOH A 108 460 111 HOH HOH . I 6 HOH A 109 461 112 HOH HOH . I 6 HOH A 110 462 113 HOH HOH . I 6 HOH A 111 463 114 HOH HOH . I 6 HOH A 112 464 115 HOH HOH . I 6 HOH A 113 465 116 HOH HOH . I 6 HOH A 114 466 118 HOH HOH . I 6 HOH A 115 467 119 HOH HOH . I 6 HOH A 116 468 120 HOH HOH . I 6 HOH A 117 469 121 HOH HOH . I 6 HOH A 118 470 122 HOH HOH . I 6 HOH A 119 471 123 HOH HOH . I 6 HOH A 120 472 124 HOH HOH . I 6 HOH A 121 473 125 HOH HOH . I 6 HOH A 122 474 126 HOH HOH . I 6 HOH A 123 475 127 HOH HOH . I 6 HOH A 124 476 128 HOH HOH . I 6 HOH A 125 477 129 HOH HOH . I 6 HOH A 126 478 130 HOH HOH . I 6 HOH A 127 479 1 HOH HOH . I 6 HOH A 128 480 2 HOH HOH . I 6 HOH A 129 481 3 HOH HOH . I 6 HOH A 130 482 4 HOH HOH . I 6 HOH A 131 483 5 HOH HOH . I 6 HOH A 132 484 6 HOH HOH . I 6 HOH A 133 485 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 35.24 -17.878 -1.299 1 44.13 ? C1 GOL 361 A 1 HETATM 2 O O1 GOL . . . F 4 33.995 -17.641 -0.668 1 53.29 ? O1 GOL 361 A 1 HETATM 3 C C2 GOL . . . F 4 36.139 -18.664 -0.36 1 50.37 ? C2 GOL 361 A 1 HETATM 4 O O2 GOL . . . F 4 35.999 -18.117 0.926 1 60.49 ? O2 GOL 361 A 1 HETATM 5 C C3 GOL . . . F 4 35.731 -20.134 -0.289 1 51.36 ? C3 GOL 361 A 1 HETATM 6 O O3 GOL . . . F 4 36.478 -20.785 0.726 1 42.33 ? O3 GOL 361 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #