data_3S2K # _model_server_result.job_id tmHD3Z6cefeicnPg_a-L3w _model_server_result.datetime_utc '2024-12-27 12:02:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 3S2K # _exptl.entry_id 3S2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S2K _cell.length_a 96.043 _cell.length_b 108.014 _cell.length_c 173.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 D 1 NAG A 2692 NAG 3 n D NAG 2 D 2 NAG A 2693 NAG 3 n D FUC 3 D 3 FUC A 2694 FUC 4 n E NAG 1 E 1 NAG A 3039 NAG 4 n E NAG 2 E 2 NAG A 3040 NAG 3 n F NAG 1 F 1 NAG B 2692 NAG 3 n F NAG 2 F 2 NAG B 2693 NAG 3 n F FUC 3 F 3 FUC B 2694 FUC 4 n G NAG 1 G 1 NAG B 3039 NAG 4 n G NAG 2 G 2 NAG B 3040 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 266 A CYS 893 1_555 A SG CYS 277 A CYS 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 273 A CYS 900 1_555 A SG CYS 287 A CYS 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 289 A CYS 916 1_555 A SG CYS 302 A CYS 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 580 A CYS 1207 1_555 A SG CYS 591 A CYS 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 587 A CYS 1214 1_555 A SG CYS 601 A CYS 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 603 A CYS 1230 1_555 A SG CYS 616 A CYS 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 266 B CYS 893 1_555 B SG CYS 277 B CYS 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 273 B CYS 900 1_555 B SG CYS 287 B CYS 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 B SG CYS 289 B CYS 916 1_555 B SG CYS 302 B CYS 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 B SG CYS 580 B CYS 1207 1_555 B SG CYS 591 B CYS 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 587 B CYS 1214 1_555 B SG CYS 601 B CYS 1228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 B SG CYS 603 B CYS 1230 1_555 B SG CYS 616 B CYS 1243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 C SG CYS 15 C CYS 189 1_555 C SG CYS 27 C CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 C SG CYS 21 C CYS 195 1_555 C SG CYS 36 C CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 C SG CYS 26 C CYS 200 1_555 C SG CYS 63 C CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 C SG CYS 46 C CYS 220 1_555 C SG CYS 71 C CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 C SG CYS 65 C CYS 239 1_555 C SG CYS 89 C CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 65 A ASN 692 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 232 A ASN 859 1_555 H C1 NAG . A NAG 2859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 238 A ASN 865 1_555 I C1 NAG . A NAG 2865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 299 A ASN 926 1_555 J C1 NAG . A NAG 2926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 412 A ASN 1039 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 B ND2 ASN 65 B ASN 692 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 B ND2 ASN 232 B ASN 859 1_555 L C1 NAG . B NAG 2859 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 238 B ASN 865 1_555 M C1 NAG . B NAG 2865 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 B ND2 ASN 299 B ASN 926 1_555 N C1 NAG . B NAG 2926 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 B ND2 ASN 412 B ASN 1039 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 152 n n C1 C2 GOL sing 153 n n C1 H11 GOL sing 154 n n C1 H12 GOL sing 155 n n O1 HO1 GOL sing 156 n n C2 O2 GOL sing 157 n n C2 C3 GOL sing 158 n n C2 H2 GOL sing 159 n n O2 HO2 GOL sing 160 n n C3 O3 GOL sing 161 n n C3 H31 GOL sing 162 n n C3 H32 GOL sing 163 n n O3 HO3 GOL sing 164 n n # _atom_sites.entry_id 3S2K _atom_sites.fract_transf_matrix[1][1] 0.010412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 NAG A 1 2859 2859 NAG NAG . I 5 NAG A 1 2865 2865 NAG NAG . J 5 NAG A 1 2926 2926 NAG NAG . K 6 GOL A 1 101 101 GOL GOL . L 5 NAG B 1 2859 2859 NAG NAG . M 5 NAG B 1 2865 2865 NAG NAG . N 5 NAG B 1 2926 2926 NAG NAG . O 6 GOL B 1 102 102 GOL GOL . P 7 HOH A 1 1 1 HOH HOH . P 7 HOH A 2 2 2 HOH HOH . P 7 HOH A 3 3 3 HOH HOH . P 7 HOH A 4 4 4 HOH HOH . P 7 HOH A 5 5 5 HOH HOH . P 7 HOH A 6 6 6 HOH HOH . P 7 HOH A 7 7 7 HOH HOH . P 7 HOH A 8 8 8 HOH HOH . P 7 HOH A 9 9 9 HOH HOH . P 7 HOH A 10 10 10 HOH HOH . P 7 HOH A 11 11 11 HOH HOH . P 7 HOH A 12 12 12 HOH HOH . P 7 HOH A 13 13 13 HOH HOH . P 7 HOH A 14 14 14 HOH HOH . P 7 HOH A 15 15 15 HOH HOH . P 7 HOH A 16 16 16 HOH HOH . P 7 HOH A 17 17 17 HOH HOH . P 7 HOH A 18 18 18 HOH HOH . P 7 HOH A 19 19 19 HOH HOH . P 7 HOH A 20 20 20 HOH HOH . P 7 HOH A 21 21 21 HOH HOH . P 7 HOH A 22 22 22 HOH HOH . Q 7 HOH B 1 1 1 HOH HOH . Q 7 HOH B 2 2 2 HOH HOH . Q 7 HOH B 3 3 3 HOH HOH . Q 7 HOH B 4 4 4 HOH HOH . Q 7 HOH B 5 5 5 HOH HOH . Q 7 HOH B 6 6 6 HOH HOH . Q 7 HOH B 7 7 7 HOH HOH . Q 7 HOH B 8 8 8 HOH HOH . Q 7 HOH B 9 9 9 HOH HOH . Q 7 HOH B 10 10 10 HOH HOH . Q 7 HOH B 11 11 11 HOH HOH . Q 7 HOH B 12 12 12 HOH HOH . Q 7 HOH B 13 13 13 HOH HOH . Q 7 HOH B 14 14 14 HOH HOH . Q 7 HOH B 15 15 15 HOH HOH . Q 7 HOH B 16 16 16 HOH HOH . Q 7 HOH B 17 17 17 HOH HOH . Q 7 HOH B 18 18 18 HOH HOH . Q 7 HOH B 19 19 19 HOH HOH . Q 7 HOH B 20 20 20 HOH HOH . Q 7 HOH B 21 21 21 HOH HOH . Q 7 HOH B 22 22 22 HOH HOH . Q 7 HOH B 23 23 23 HOH HOH . Q 7 HOH B 24 24 24 HOH HOH . Q 7 HOH B 25 25 25 HOH HOH . Q 7 HOH B 26 26 26 HOH HOH . Q 7 HOH B 27 27 27 HOH HOH . Q 7 HOH B 28 28 28 HOH HOH . Q 7 HOH B 29 29 29 HOH HOH . Q 7 HOH B 30 30 30 HOH HOH . R 7 HOH C 1 1 1 HOH HOH . R 7 HOH C 2 2 2 HOH HOH . R 7 HOH C 3 3 3 HOH HOH . R 7 HOH C 4 4 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 6.198 -14.364 -51.333 1 106.2 ? C1 GOL 101 A 1 HETATM 2 O O1 GOL . . . K 6 5.728 -13.203 -50.682 1 103.44 ? O1 GOL 101 A 1 HETATM 3 C C2 GOL . . . K 6 7.623 -14.135 -51.825 1 107.46 ? C2 GOL 101 A 1 HETATM 4 O O2 GOL . . . K 6 8.021 -12.818 -51.519 1 105.52 ? O2 GOL 101 A 1 HETATM 5 C C3 GOL . . . K 6 7.682 -14.347 -53.333 1 102.88 ? C3 GOL 101 A 1 HETATM 6 O O3 GOL . . . K 6 7.401 -15.699 -53.625 1 97.71 ? O3 GOL 101 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #