data_3S2P # _model_server_result.job_id QOgD64CfFsbbyzf1z8eQsQ _model_server_result.datetime_utc '2024-11-04 20:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 3S2P # _exptl.entry_id 3S2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.382 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4S)-1-{3-[2-amino-6-(propan-2-yl)pyrimidin-4-yl]-4-hydroxyphenyl}pyrrolidine-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S2P _cell.length_a 52.777 _cell.length_b 71.058 _cell.length_c 72.123 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H22 N4 O3' _chem_comp.formula_weight 330.382 _chem_comp.id PMU _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4S)-1-{3-[2-amino-6-(propan-2-yl)pyrimidin-4-yl]-4-hydroxyphenyl}pyrrolidine-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 PMU sing 260 n n C1 C9 PMU sing 261 n n N1 C5 PMU sing 262 n n N1 C8 PMU sing 263 n n O1 C2 PMU sing 264 n n C2 C3 PMU doub 265 n y C2 C7 PMU sing 266 n y O2 C10 PMU sing 267 n n C3 C4 PMU sing 268 n y O3 C9 PMU sing 269 n n C4 C5 PMU doub 270 n y C5 C6 PMU sing 271 n y C6 C7 PMU doub 272 n y C7 C15 PMU sing 273 n y C8 C10 PMU sing 274 n n C9 C10 PMU sing 275 n n C11 C12 PMU sing 276 n n C11 C18 PMU sing 277 n n C11 C19 PMU sing 278 n n C15 N16 PMU doub 279 n y C15 C20 PMU sing 280 n y N16 C17 PMU sing 281 n y C17 N18 PMU doub 282 n y C17 N21 PMU sing 283 n n N18 C19 PMU sing 284 n y C19 C20 PMU doub 285 n y C1 H1 PMU sing 286 n n C1 H1A PMU sing 287 n n O1 HO1 PMU sing 288 n n O2 HO2 PMU sing 289 n n C3 H3 PMU sing 290 n n O3 HO3 PMU sing 291 n n C4 H4 PMU sing 292 n n C6 H6 PMU sing 293 n n C8 H8 PMU sing 294 n n C8 H8A PMU sing 295 n n C9 H9 PMU sing 296 n n C10 H10 PMU sing 297 n n C11 H11 PMU sing 298 n n C12 H12 PMU sing 299 n n C12 H12A PMU sing 300 n n C12 H12B PMU sing 301 n n C18 H18 PMU sing 302 n n C18 H18A PMU sing 303 n n C18 H18B PMU sing 304 n n C20 H20 PMU sing 305 n n N21 HN21 PMU sing 306 n n N21 HN2A PMU sing 307 n n # _atom_sites.entry_id 3S2P _atom_sites.fract_transf_matrix[1][1] 0.018948 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PMU A 1 500 500 PMU 177 . C 3 HOH A 1 299 1 HOH TIP . C 3 HOH A 2 300 2 HOH TIP . C 3 HOH A 3 301 3 HOH TIP . C 3 HOH A 4 302 4 HOH TIP . C 3 HOH A 5 303 5 HOH TIP . C 3 HOH A 6 304 6 HOH TIP . C 3 HOH A 7 305 7 HOH TIP . C 3 HOH A 8 306 8 HOH TIP . C 3 HOH A 9 307 9 HOH TIP . C 3 HOH A 10 308 10 HOH TIP . C 3 HOH A 11 309 11 HOH TIP . C 3 HOH A 12 310 12 HOH TIP . C 3 HOH A 13 311 13 HOH TIP . C 3 HOH A 14 312 14 HOH TIP . C 3 HOH A 15 313 15 HOH TIP . C 3 HOH A 16 314 16 HOH TIP . C 3 HOH A 17 315 17 HOH TIP . C 3 HOH A 18 316 18 HOH TIP . C 3 HOH A 19 317 19 HOH TIP . C 3 HOH A 20 318 20 HOH TIP . C 3 HOH A 21 319 21 HOH TIP . C 3 HOH A 22 320 22 HOH TIP . C 3 HOH A 23 321 23 HOH TIP . C 3 HOH A 24 322 24 HOH TIP . C 3 HOH A 25 323 25 HOH TIP . C 3 HOH A 26 324 26 HOH TIP . C 3 HOH A 27 325 27 HOH TIP . C 3 HOH A 28 326 28 HOH TIP . C 3 HOH A 29 327 29 HOH TIP . C 3 HOH A 30 328 30 HOH TIP . C 3 HOH A 31 329 31 HOH TIP . C 3 HOH A 32 330 32 HOH TIP . C 3 HOH A 33 331 33 HOH TIP . C 3 HOH A 34 332 34 HOH TIP . C 3 HOH A 35 333 35 HOH TIP . C 3 HOH A 36 334 36 HOH TIP . C 3 HOH A 37 335 37 HOH TIP . C 3 HOH A 38 336 38 HOH TIP . C 3 HOH A 39 337 39 HOH TIP . C 3 HOH A 40 338 40 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PMU . . . B 2 28.155 27.294 25.768 1 37.29 ? C1 PMU 500 A 1 HETATM 2 N N1 PMU . . . B 2 26.895 28.053 25.738 1 37.29 ? N1 PMU 500 A 1 HETATM 3 O O1 PMU . . . B 2 24.186 29.911 30.276 1 37.29 ? O1 PMU 500 A 1 HETATM 4 C C2 PMU . . . B 2 24.813 29.399 29.159 1 37.29 ? C2 PMU 500 A 1 HETATM 5 O O2 PMU . . . B 2 27.295 27.64 22.225 1 37.29 ? O2 PMU 500 A 1 HETATM 6 C C3 PMU . . . B 2 25.995 30.072 28.728 1 37.29 ? C3 PMU 500 A 1 HETATM 7 O O3 PMU . . . B 2 29.817 27.2 23.961 1 37.29 ? O3 PMU 500 A 1 HETATM 8 C C4 PMU . . . B 2 26.715 29.628 27.581 1 37.29 ? C4 PMU 500 A 1 HETATM 9 C C5 PMU . . . B 2 26.239 28.497 26.868 1 37.29 ? C5 PMU 500 A 1 HETATM 10 C C6 PMU . . . B 2 25.064 27.836 27.311 1 37.29 ? C6 PMU 500 A 1 HETATM 11 C C7 PMU . . . B 2 24.312 28.259 28.462 1 37.29 ? C7 PMU 500 A 1 HETATM 12 C C8 PMU . . . B 2 26.376 28.309 24.387 1 37.29 ? C8 PMU 500 A 1 HETATM 13 C C9 PMU . . . B 2 28.437 27.056 24.272 1 37.29 ? C9 PMU 500 A 1 HETATM 14 C C10 PMU . . . B 2 27.613 28.12 23.521 1 37.29 ? C10 PMU 500 A 1 HETATM 15 C C11 PMU . . . B 2 20.781 24.532 28.06 1 37.29 ? C11 PMU 500 A 1 HETATM 16 C C12 PMU . . . B 2 21.672 24.038 26.903 1 37.29 ? C12 PMU 500 A 1 HETATM 17 C C15 PMU . . . B 2 23.05 27.536 28.92 1 37.29 ? C15 PMU 500 A 1 HETATM 18 N N16 PMU . . . B 2 22.312 27.937 30.052 1 37.29 ? N16 PMU 500 A 1 HETATM 19 C C17 PMU . . . B 2 21.204 27.27 30.445 1 37.29 ? C17 PMU 500 A 1 HETATM 20 C C18 PMU . . . B 2 19.355 24.832 27.565 1 37.29 ? C18 PMU 500 A 1 HETATM 21 N N18 PMU . . . B 2 20.708 26.196 29.821 1 37.29 ? N18 PMU 500 A 1 HETATM 22 C C19 PMU . . . B 2 21.374 25.763 28.723 1 37.29 ? C19 PMU 500 A 1 HETATM 23 C C20 PMU . . . B 2 22.552 26.408 28.24 1 37.29 ? C20 PMU 500 A 1 HETATM 24 N N21 PMU . . . B 2 20.53 27.653 31.516 1 37.29 ? N21 PMU 500 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #