data_3S2U # _model_server_result.job_id 4K_bN3hBfq9BTnvwuwP44A _model_server_result.datetime_utc '2025-02-05 12:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":366}' # _entry.id 3S2U # _exptl.entry_id 3S2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S2U _cell.length_a 49.93 _cell.length_b 49.93 _cell.length_c 278.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 358 n n C1' O1' UD1 sing 359 n n C1' O5' UD1 sing 360 n n C1' H1' UD1 sing 361 n n C2' C3' UD1 sing 362 n n C2' N2' UD1 sing 363 n n C2' H2' UD1 sing 364 n n C3' C4' UD1 sing 365 n n C3' O3' UD1 sing 366 n n C3' H3' UD1 sing 367 n n C4' C5' UD1 sing 368 n n C4' O4' UD1 sing 369 n n C4' H4' UD1 sing 370 n n C5' C6' UD1 sing 371 n n C5' O5' UD1 sing 372 n n C5' H5' UD1 sing 373 n n C6' O6' UD1 sing 374 n n C6' "H6'1" UD1 sing 375 n n C6' "H6'2" UD1 sing 376 n n C7' C8' UD1 sing 377 n n C7' N2' UD1 sing 378 n n C7' O7' UD1 doub 379 n n C8' "H8'1" UD1 sing 380 n n C8' "H8'2" UD1 sing 381 n n C8' "H8'3" UD1 sing 382 n n N2' HN2' UD1 sing 383 n n O1' PB UD1 sing 384 n n O3' HO3' UD1 sing 385 n n O4' HO4' UD1 sing 386 n n O6' HO6' UD1 sing 387 n n N1 C2 UD1 sing 388 n n N1 C6 UD1 sing 389 n n N1 C1B UD1 sing 390 n n C2 N3 UD1 sing 391 n n C2 O2 UD1 doub 392 n n N3 C4 UD1 sing 393 n n N3 HN3 UD1 sing 394 n n C4 C5 UD1 sing 395 n n C4 O4 UD1 doub 396 n n C5 C6 UD1 doub 397 n n C5 H5 UD1 sing 398 n n C6 H6 UD1 sing 399 n n C1B C2B UD1 sing 400 n n C1B O4B UD1 sing 401 n n C1B H1B UD1 sing 402 n n C2B O2' UD1 sing 403 n n C2B C3B UD1 sing 404 n n C2B H2B UD1 sing 405 n n O2' HO2' UD1 sing 406 n n C3B C4B UD1 sing 407 n n C3B O3B UD1 sing 408 n n C3B H3B UD1 sing 409 n n C4B O4B UD1 sing 410 n n C4B C5B UD1 sing 411 n n C4B H4B UD1 sing 412 n n O3B HO3A UD1 sing 413 n n C5B O5B UD1 sing 414 n n C5B "H5'1" UD1 sing 415 n n C5B "H5'2" UD1 sing 416 n n O5B PA UD1 sing 417 n n PA O1A UD1 doub 418 n n PA O2A UD1 sing 419 n n PA O3A UD1 sing 420 n n O2A HOA2 UD1 sing 421 n n O3A PB UD1 sing 422 n n PB O1B UD1 doub 423 n n PB O2B UD1 sing 424 n n O2B HOB2 UD1 sing 425 n n # _atom_sites.entry_id 3S2U _atom_sites.fract_transf_matrix[1][1] 0.020028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UD1 A 1 366 1 UD1 UD1 . C 3 HOH A 1 367 1 HOH HOH . C 3 HOH A 2 368 2 HOH HOH . C 3 HOH A 3 369 5 HOH HOH . C 3 HOH A 4 370 7 HOH HOH . C 3 HOH A 5 371 8 HOH HOH . C 3 HOH A 6 372 9 HOH HOH . C 3 HOH A 7 373 10 HOH HOH . C 3 HOH A 8 374 12 HOH HOH . C 3 HOH A 9 375 13 HOH HOH . C 3 HOH A 10 376 14 HOH HOH . C 3 HOH A 11 377 17 HOH HOH . C 3 HOH A 12 378 19 HOH HOH . C 3 HOH A 13 379 20 HOH HOH . C 3 HOH A 14 380 21 HOH HOH . C 3 HOH A 15 381 22 HOH HOH . C 3 HOH A 16 382 23 HOH HOH . C 3 HOH A 17 383 25 HOH HOH . C 3 HOH A 18 384 27 HOH HOH . C 3 HOH A 19 385 28 HOH HOH . C 3 HOH A 20 386 29 HOH HOH . C 3 HOH A 21 387 30 HOH HOH . C 3 HOH A 22 388 32 HOH HOH . C 3 HOH A 23 389 36 HOH HOH . C 3 HOH A 24 390 37 HOH HOH . C 3 HOH A 25 391 38 HOH HOH . C 3 HOH A 26 392 39 HOH HOH . C 3 HOH A 27 393 40 HOH HOH . C 3 HOH A 28 394 41 HOH HOH . C 3 HOH A 29 395 42 HOH HOH . C 3 HOH A 30 396 43 HOH HOH . C 3 HOH A 31 397 44 HOH HOH . C 3 HOH A 32 398 45 HOH HOH . C 3 HOH A 33 399 46 HOH HOH . C 3 HOH A 34 400 47 HOH HOH . C 3 HOH A 35 401 49 HOH HOH . C 3 HOH A 36 402 50 HOH HOH . C 3 HOH A 37 403 51 HOH HOH . C 3 HOH A 38 404 52 HOH HOH . C 3 HOH A 39 405 54 HOH HOH . C 3 HOH A 40 406 55 HOH HOH . C 3 HOH A 41 407 57 HOH HOH . C 3 HOH A 42 408 59 HOH HOH . C 3 HOH A 43 409 60 HOH HOH . C 3 HOH A 44 410 61 HOH HOH . C 3 HOH A 45 411 63 HOH HOH . C 3 HOH A 46 412 64 HOH HOH . C 3 HOH A 47 413 65 HOH HOH . C 3 HOH A 48 414 66 HOH HOH . C 3 HOH A 49 415 67 HOH HOH . C 3 HOH A 50 416 68 HOH HOH . C 3 HOH A 51 417 69 HOH HOH . C 3 HOH A 52 418 71 HOH HOH . C 3 HOH A 53 419 72 HOH HOH . C 3 HOH A 54 420 74 HOH HOH . C 3 HOH A 55 421 77 HOH HOH . C 3 HOH A 56 422 78 HOH HOH . C 3 HOH A 57 423 79 HOH HOH . C 3 HOH A 58 424 80 HOH HOH . C 3 HOH A 59 425 82 HOH HOH . C 3 HOH A 60 426 88 HOH HOH . C 3 HOH A 61 427 89 HOH HOH . C 3 HOH A 62 428 90 HOH HOH . C 3 HOH A 63 429 91 HOH HOH . C 3 HOH A 64 430 92 HOH HOH . C 3 HOH A 65 431 93 HOH HOH . C 3 HOH A 66 432 95 HOH HOH . C 3 HOH A 67 433 102 HOH HOH . C 3 HOH A 68 434 103 HOH HOH . C 3 HOH A 69 435 104 HOH HOH . C 3 HOH A 70 436 107 HOH HOH . C 3 HOH A 71 437 108 HOH HOH . C 3 HOH A 72 438 110 HOH HOH . C 3 HOH A 73 439 111 HOH HOH . C 3 HOH A 74 440 114 HOH HOH . C 3 HOH A 75 441 115 HOH HOH . C 3 HOH A 76 442 116 HOH HOH . C 3 HOH A 77 443 117 HOH HOH . C 3 HOH A 78 444 118 HOH HOH . C 3 HOH A 79 445 119 HOH HOH . C 3 HOH A 80 446 121 HOH HOH . C 3 HOH A 81 447 125 HOH HOH . C 3 HOH A 82 448 126 HOH HOH . C 3 HOH A 83 449 127 HOH HOH . C 3 HOH A 84 450 130 HOH HOH . C 3 HOH A 85 451 131 HOH HOH . C 3 HOH A 86 452 133 HOH HOH . C 3 HOH A 87 453 134 HOH HOH . C 3 HOH A 88 454 135 HOH HOH . C 3 HOH A 89 455 136 HOH HOH . C 3 HOH A 90 456 137 HOH HOH . C 3 HOH A 91 457 138 HOH HOH . C 3 HOH A 92 458 139 HOH HOH . C 3 HOH A 93 459 140 HOH HOH . C 3 HOH A 94 460 141 HOH HOH . C 3 HOH A 95 461 142 HOH HOH . C 3 HOH A 96 462 144 HOH HOH . C 3 HOH A 97 463 145 HOH HOH . C 3 HOH A 98 464 146 HOH HOH . C 3 HOH A 99 465 147 HOH HOH . C 3 HOH A 100 466 149 HOH HOH . C 3 HOH A 101 467 151 HOH HOH . C 3 HOH A 102 468 152 HOH HOH . C 3 HOH A 103 469 153 HOH HOH . C 3 HOH A 104 470 154 HOH HOH . C 3 HOH A 105 471 155 HOH HOH . C 3 HOH A 106 472 156 HOH HOH . C 3 HOH A 107 473 157 HOH HOH . C 3 HOH A 108 474 158 HOH HOH . C 3 HOH A 109 475 159 HOH HOH . C 3 HOH A 110 476 160 HOH HOH . C 3 HOH A 111 477 161 HOH HOH . C 3 HOH A 112 478 162 HOH HOH . C 3 HOH A 113 479 163 HOH HOH . C 3 HOH A 114 480 164 HOH HOH . C 3 HOH A 115 481 165 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . B 2 14.868 -15.684 -15.008 1 35.73 ? C1' UD1 366 A 1 HETATM 2 C C2' UD1 . . . B 2 15.594 -16.116 -13.744 1 36.6 ? C2' UD1 366 A 1 HETATM 3 C C3' UD1 . . . B 2 14.928 -17.413 -13.272 1 35.98 ? C3' UD1 366 A 1 HETATM 4 C C4' UD1 . . . B 2 13.428 -17.241 -13 1 35.84 ? C4' UD1 366 A 1 HETATM 5 C C5' UD1 . . . B 2 12.676 -16.205 -13.886 1 36.65 ? C5' UD1 366 A 1 HETATM 6 C C6' UD1 . . . B 2 11.873 -15.236 -12.998 1 37.5 ? C6' UD1 366 A 1 HETATM 7 C C7' UD1 . . . B 2 18.033 -15.599 -13.7 1 37.07 ? C7' UD1 366 A 1 HETATM 8 C C8' UD1 . . . B 2 19.38 -16.142 -14.086 1 36.74 ? C8' UD1 366 A 1 HETATM 9 N N2' UD1 . . . B 2 16.995 -16.35 -14.096 1 37.11 ? N2' UD1 366 A 1 HETATM 10 O O1' UD1 . . . B 2 14.96 -16.781 -15.906 1 33.91 ? O1' UD1 366 A 1 HETATM 11 O O3' UD1 . . . B 2 15.632 -17.964 -12.158 1 35.66 ? O3' UD1 366 A 1 HETATM 12 O O4' UD1 . . . B 2 12.779 -18.517 -13.139 1 35.62 ? O4' UD1 366 A 1 HETATM 13 O O5' UD1 . . . B 2 13.48 -15.37 -14.755 1 36.28 ? O5' UD1 366 A 1 HETATM 14 O O6' UD1 . . . B 2 10.459 -15.453 -13.1 1 37.48 ? O6' UD1 366 A 1 HETATM 15 O O7' UD1 . . . B 2 17.91 -14.552 -13.077 1 37.28 ? O7' UD1 366 A 1 HETATM 16 N N1 UD1 . . . B 2 13.897 -18.14 -24.569 1 25.35 ? N1 UD1 366 A 1 HETATM 17 C C2 UD1 . . . B 2 13.716 -17.924 -25.963 1 25.03 ? C2 UD1 366 A 1 HETATM 18 N N3 UD1 . . . B 2 14.804 -17.932 -26.767 1 23.99 ? N3 UD1 366 A 1 HETATM 19 C C4 UD1 . . . B 2 16.031 -18.188 -26.275 1 24.3 ? C4 UD1 366 A 1 HETATM 20 C C5 UD1 . . . B 2 16.25 -18.302 -24.882 1 24.44 ? C5 UD1 366 A 1 HETATM 21 C C6 UD1 . . . B 2 15.138 -18.21 -24.027 1 24.92 ? C6 UD1 366 A 1 HETATM 22 O O2 UD1 . . . B 2 12.555 -17.68 -26.432 1 25.27 ? O2 UD1 366 A 1 HETATM 23 O O4 UD1 . . . B 2 16.92 -18.514 -27.077 1 24.16 ? O4 UD1 366 A 1 HETATM 24 C C1B UD1 . . . B 2 12.698 -18.036 -23.739 1 25.66 ? C1B UD1 366 A 1 HETATM 25 C C2B UD1 . . . B 2 12.181 -19.409 -23.37 1 25.17 ? C2B UD1 366 A 1 HETATM 26 O O2' UD1 . . . B 2 11.572 -20.105 -24.472 1 24.98 ? O2' UD1 366 A 1 HETATM 27 C C3B UD1 . . . B 2 11.214 -19.032 -22.285 1 24.58 ? C3B UD1 366 A 1 HETATM 28 C C4B UD1 . . . B 2 11.949 -17.908 -21.556 1 25.9 ? C4B UD1 366 A 1 HETATM 29 O O4B UD1 . . . B 2 12.861 -17.344 -22.5 1 26.07 ? O4B UD1 366 A 1 HETATM 30 O O3B UD1 . . . B 2 10.005 -18.541 -22.886 1 23.58 ? O3B UD1 366 A 1 HETATM 31 C C5B UD1 . . . B 2 12.846 -18.468 -20.478 1 27.34 ? C5B UD1 366 A 1 HETATM 32 O O5B UD1 . . . B 2 12.19 -18.308 -19.231 1 29.1 ? O5B UD1 366 A 1 HETATM 33 P PA UD1 . . . B 2 12.871 -18.828 -17.874 1 29.84 ? PA UD1 366 A 1 HETATM 34 O O1A UD1 . . . B 2 11.934 -18.38 -16.787 1 29.55 ? O1A UD1 366 A 1 HETATM 35 O O2A UD1 . . . B 2 13.124 -20.295 -18.066 1 31.09 ? O2A UD1 366 A 1 HETATM 36 O O3A UD1 . . . B 2 14.355 -18.167 -17.871 1 30.3 ? O3A UD1 366 A 1 HETATM 37 P PB UD1 . . . B 2 14.729 -16.636 -17.472 1 30.72 ? PB UD1 366 A 1 HETATM 38 O O1B UD1 . . . B 2 13.55 -15.733 -17.629 1 31.15 ? O1B UD1 366 A 1 HETATM 39 O O2B UD1 . . . B 2 16.067 -16.268 -18.018 1 30.68 ? O2B UD1 366 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #