data_3S3D # _model_server_result.job_id TaYAtZY88FsJ6gOb1iyTBg _model_server_result.datetime_utc '2024-11-04 23:04:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3s3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 3S3D # _exptl.entry_id 3S3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 920.954 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-AS _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3S3D _cell.length_a 110.03 _cell.length_b 110.03 _cell.length_c 170.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3S3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 72 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc2 A ND1 HIS 239 A HIS 233 1_555 D CU CU . A CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc3 A NE2 HIS 288 A HIS 282 1_555 D CU CU . A CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc4 A NE2 HIS 289 A HIS 283 1_555 D CU CU . A CU 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc5 A NE2 HIS 390 A HIS 384 1_555 F FE HAS . A HAS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc6 A NE2 HIS 392 A HIS 386 1_555 E FE HEM . A HEM 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc7 B ND1 HIS 112 B HIS 114 1_555 J CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc8 B SG CYS 147 B CYS 149 1_555 J CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc9 B SG CYS 147 B CYS 149 1_555 J CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 B O GLN 149 B GLN 151 1_555 J CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc11 B SG CYS 151 B CYS 153 1_555 J CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc12 B SG CYS 151 B CYS 153 1_555 J CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc13 B ND1 HIS 155 B HIS 157 1_555 J CU1 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc14 B SD MET 158 B MET 160 1_555 J CU2 CUA . B CUA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'C54 H64 Fe N4 O6' _chem_comp.formula_weight 920.954 _chem_comp.id HAS _chem_comp.mon_nstd_flag . _chem_comp.name HEME-AS _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HAS sing 130 n n FE NB HAS sing 131 n n FE NC HAS sing 132 n n FE ND HAS sing 133 n n CHA C1A HAS doub 134 n y CHA C4D HAS sing 135 n y CHA HHA HAS sing 136 n n CHB C1D HAS doub 137 n y CHB C1B HAS sing 138 n y CHB HHB HAS sing 139 n n CHC C4B HAS doub 140 n y CHC C1C HAS sing 141 n y CHC HHC HAS sing 142 n n CHD C4C HAS sing 143 n y CHD C4A HAS doub 144 n y CHD HHD HAS sing 145 n n NA C1A HAS sing 146 n y NA C4A HAS sing 147 n y C1A C2A HAS sing 148 n y C2A C3A HAS doub 149 n y C2A CAA HAS sing 150 n n C3A C4A HAS sing 151 n y C3A CMA HAS sing 152 n n CMA HMA1 HAS sing 153 n n CMA HMA2 HAS sing 154 n n CMA HMA3 HAS sing 155 n n OMD CMD HAS doub 156 n n CAA CBA HAS sing 157 n n CAA HAA1 HAS sing 158 n n CAA HAA2 HAS sing 159 n n CBA CGA HAS sing 160 n n CBA HBA1 HAS sing 161 n n CBA HBA2 HAS sing 162 n n CGA O1A HAS doub 163 n n CGA O2A HAS sing 164 n n O2A H2A HAS sing 165 n n NB C1B HAS doub 166 n y NB C4B HAS sing 167 n y C1B C2B HAS sing 168 n n C2B C3B HAS doub 169 n n C2B CMB HAS sing 170 n n C3B C4B HAS sing 171 n n C3B C11 HAS sing 172 n n CMB HMB1 HAS sing 173 n n CMB HMB2 HAS sing 174 n n CMB HMB3 HAS sing 175 n n NC C1C HAS sing 176 n y NC C4C HAS sing 177 n y C1C C2C HAS doub 178 n y C2C C3C HAS sing 179 n y C2C CMC HAS sing 180 n n C3C C4C HAS doub 181 n y C3C CAC HAS sing 182 n n CMC HMC1 HAS sing 183 n n CMC HMC2 HAS sing 184 n n CMC HMC3 HAS sing 185 n n CAC CBC HAS doub 186 n n CAC HAC HAS sing 187 n n CBC HBC1 HAS sing 188 n n CBC HBC2 HAS sing 189 n n ND C1D HAS sing 190 n y ND C4D HAS doub 191 n y C1D C2D HAS sing 192 n n C2D C3D HAS doub 193 n n C2D CMD HAS sing 194 n n C3D C4D HAS sing 195 n n C3D CAD HAS sing 196 n n CMD HMD HAS sing 197 n n CAD CBD HAS sing 198 n n CAD HAD1 HAS sing 199 n n CAD HAD2 HAS sing 200 n n CBD CGD HAS sing 201 n n CBD HBD1 HAS sing 202 n n CBD HBD2 HAS sing 203 n n CGD O1D HAS doub 204 n n CGD O2D HAS sing 205 n n O2D H2D HAS sing 206 n n C11 O11 HAS sing 207 n n C11 C12 HAS sing 208 n n C11 H11 HAS sing 209 n n O11 HO1 HAS sing 210 n n C12 C13 HAS sing 211 n n C12 H121 HAS sing 212 n n C12 H122 HAS sing 213 n n C13 C14 HAS sing 214 n n C13 H131 HAS sing 215 n n C13 H132 HAS sing 216 n n C14 C15 HAS doub 217 e n C14 H14 HAS sing 218 n n C15 C16 HAS sing 219 n n C15 C26 HAS sing 220 n n C16 C17 HAS sing 221 n n C16 H161 HAS sing 222 n n C16 H162 HAS sing 223 n n C17 C18 HAS sing 224 n n C17 H171 HAS sing 225 n n C17 H172 HAS sing 226 n n C18 C19 HAS doub 227 e n C18 H18 HAS sing 228 n n C19 C20 HAS sing 229 n n C19 C27 HAS sing 230 n n C20 C21 HAS sing 231 n n C20 H201 HAS sing 232 n n C20 H202 HAS sing 233 n n C21 C22 HAS sing 234 n n C21 H211 HAS sing 235 n n C21 H212 HAS sing 236 n n C22 C23 HAS doub 237 e n C22 H22 HAS sing 238 n n C23 C24 HAS sing 239 n n C23 C25 HAS sing 240 n n C24 C28 HAS sing 241 n n C24 H241 HAS sing 242 n n C24 H242 HAS sing 243 n n C25 H251 HAS sing 244 n n C25 H252 HAS sing 245 n n C25 H253 HAS sing 246 n n C26 H261 HAS sing 247 n n C26 H262 HAS sing 248 n n C26 H263 HAS sing 249 n n C27 H271 HAS sing 250 n n C27 H272 HAS sing 251 n n C27 H273 HAS sing 252 n n C28 C29 HAS sing 253 n n C28 H281 HAS sing 254 n n C28 H282 HAS sing 255 n n C29 C30 HAS doub 256 n n C29 H29 HAS sing 257 n n C30 C31 HAS sing 258 n n C30 C32 HAS sing 259 n n C31 H311 HAS sing 260 n n C31 H312 HAS sing 261 n n C31 H313 HAS sing 262 n n C32 H321 HAS sing 263 n n C32 H322 HAS sing 264 n n C32 H323 HAS sing 265 n n # _atom_sites.entry_id 3S3D _atom_sites.fract_transf_matrix[1][1] 0.009088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009088 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CU A 1 803 803 CU CU . E 5 HEM A 1 800 800 HEM HEM . F 6 HAS A 1 801 801 HAS HAS . G 7 XE A 1 563 563 XE XE . H 7 XE A 1 564 564 XE XE . I 7 XE A 1 565 565 XE XE . J 8 CUA B 1 802 802 CUA CUA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HAS . . . F 6 -28.519 30.563 -1.174 1 61.11 ? FE HAS 801 A 1 HETATM 2 C CHA HAS . . . F 6 -26.789 27.702 -2.085 1 61.11 ? CHA HAS 801 A 1 HETATM 3 C CHB HAS . . . F 6 -25.778 31.689 0.586 1 61.11 ? CHB HAS 801 A 1 HETATM 4 C CHC HAS . . . F 6 -30.378 33.203 -0.053 1 61.11 ? CHC HAS 801 A 1 HETATM 5 C CHD HAS . . . F 6 -30.863 29.892 -3.654 1 61.11 ? CHD HAS 801 A 1 HETATM 6 N NA HAS . . . F 6 -28.789 29.059 -2.613 1 61.11 ? NA HAS 801 A 1 HETATM 7 C C1A HAS . . . F 6 -28.012 27.988 -2.862 1 61.11 ? C1A HAS 801 A 1 HETATM 8 C C2A HAS . . . F 6 -28.466 27.103 -3.975 1 61.11 ? C2A HAS 801 A 1 HETATM 9 C C3A HAS . . . F 6 -29.681 27.765 -4.429 1 61.11 ? C3A HAS 801 A 1 HETATM 10 C C4A HAS . . . F 6 -29.767 28.933 -3.526 1 61.11 ? C4A HAS 801 A 1 HETATM 11 C CMA HAS . . . F 6 -30.594 27.341 -5.539 1 61.11 ? CMA HAS 801 A 1 HETATM 12 O OMD HAS . . . F 6 -22.923 31.07 0.882 1 61.11 ? OMD HAS 801 A 1 HETATM 13 C CAA HAS . . . F 6 -27.865 25.835 -4.523 1 61.11 ? CAA HAS 801 A 1 HETATM 14 C CBA HAS . . . F 6 -26.978 26.187 -5.699 1 61.11 ? CBA HAS 801 A 1 HETATM 15 C CGA HAS . . . F 6 -26.409 24.89 -6.223 1 61.11 ? CGA HAS 801 A 1 HETATM 16 O O1A HAS . . . F 6 -27.193 24.004 -6.658 1 61.11 ? O1A HAS 801 A 1 HETATM 17 O O2A HAS . . . F 6 -25.175 24.733 -6.188 1 61.11 ? O2A HAS 801 A 1 HETATM 18 N NB HAS . . . F 6 -28.138 32.192 0.066 1 61.11 ? NB HAS 801 A 1 HETATM 19 C C1B HAS . . . F 6 -27.003 32.515 0.698 1 61.11 ? C1B HAS 801 A 1 HETATM 20 C C2B HAS . . . F 6 -27.106 33.685 1.456 1 61.11 ? C2B HAS 801 A 1 HETATM 21 C C3B HAS . . . F 6 -28.41 34.125 1.285 1 61.11 ? C3B HAS 801 A 1 HETATM 22 C C4B HAS . . . F 6 -28.979 33.175 0.428 1 61.11 ? C4B HAS 801 A 1 HETATM 23 C CMB HAS . . . F 6 -26.041 34.341 2.298 1 61.11 ? CMB HAS 801 A 1 HETATM 24 N NC HAS . . . F 6 -30.339 31.396 -1.758 1 61.11 ? NC HAS 801 A 1 HETATM 25 C C1C HAS . . . F 6 -30.947 32.481 -1.213 1 61.11 ? C1C HAS 801 A 1 HETATM 26 C C2C HAS . . . F 6 -32.239 32.875 -1.847 1 61.11 ? C2C HAS 801 A 1 HETATM 27 C C3C HAS . . . F 6 -32.352 31.88 -2.918 1 61.11 ? C3C HAS 801 A 1 HETATM 28 C C4C HAS . . . F 6 -31.148 31.034 -2.774 1 61.11 ? C4C HAS 801 A 1 HETATM 29 C CMC HAS . . . F 6 -33.163 34.001 -1.479 1 61.11 ? CMC HAS 801 A 1 HETATM 30 C CAC HAS . . . F 6 -33.425 31.703 -3.915 1 61.11 ? CAC HAS 801 A 1 HETATM 31 C CBC HAS . . . F 6 -33.842 32.744 -4.613 1 61.11 ? CBC HAS 801 A 1 HETATM 32 N ND HAS . . . F 6 -26.599 29.792 -0.81 1 61.11 ? ND HAS 801 A 1 HETATM 33 C C1D HAS . . . F 6 -25.618 30.381 -0.09 1 61.11 ? C1D HAS 801 A 1 HETATM 34 C C2D HAS . . . F 6 -24.468 29.615 -0.056 1 61.11 ? C2D HAS 801 A 1 HETATM 35 C C3D HAS . . . F 6 -24.725 28.415 -0.837 1 61.11 ? C3D HAS 801 A 1 HETATM 36 C C4D HAS . . . F 6 -26.031 28.643 -1.247 1 61.11 ? C4D HAS 801 A 1 HETATM 37 C CMD HAS . . . F 6 -23.198 29.9 0.631 1 61.11 ? CMD HAS 801 A 1 HETATM 38 C CAD HAS . . . F 6 -23.776 27.283 -1.12 1 61.11 ? CAD HAS 801 A 1 HETATM 39 C CBD HAS . . . F 6 -24.186 25.966 -0.471 1 61.11 ? CBD HAS 801 A 1 HETATM 40 C CGD HAS . . . F 6 -23.212 24.899 -0.954 1 61.11 ? CGD HAS 801 A 1 HETATM 41 O O1D HAS . . . F 6 -22.291 24.545 -0.178 1 61.11 ? O1D HAS 801 A 1 HETATM 42 O O2D HAS . . . F 6 -23.347 24.417 -2.106 1 61.11 ? O2D HAS 801 A 1 HETATM 43 C C11 HAS . . . F 6 -29.013 35.337 1.901 1 61.11 ? C11 HAS 801 A 1 HETATM 44 O O11 HAS . . . F 6 -29.44 36.219 0.859 1 61.11 ? O11 HAS 801 A 1 HETATM 45 C C12 HAS . . . F 6 -30.216 34.975 2.785 1 61.11 ? C12 HAS 801 A 1 HETATM 46 C C13 HAS . . . F 6 -30.714 36.206 3.526 1 61.11 ? C13 HAS 801 A 1 HETATM 47 C C14 HAS . . . F 6 -32.108 35.944 4.054 1 61.11 ? C14 HAS 801 A 1 HETATM 48 C C15 HAS . . . F 6 -32.524 36.371 5.263 1 61.11 ? C15 HAS 801 A 1 HETATM 49 C C16 HAS . . . F 6 -33.933 36.064 5.736 1 61.11 ? C16 HAS 801 A 1 HETATM 50 C C17 HAS . . . F 6 -34.824 37.309 5.755 1 61.11 ? C17 HAS 801 A 1 HETATM 51 C C18 HAS . . . F 6 -36.252 36.922 6.1 1 61.11 ? C18 HAS 801 A 1 HETATM 52 C C19 HAS . . . F 6 -37.346 37.631 5.711 1 61.11 ? C19 HAS 801 A 1 HETATM 53 C C20 HAS . . . F 6 -38.732 37.158 6.092 1 61.11 ? C20 HAS 801 A 1 HETATM 54 C C21 HAS . . . F 6 -39.248 37.8 7.388 1 61.11 ? C21 HAS 801 A 1 HETATM 55 C C22 HAS . . . F 6 -40.696 37.383 7.515 1 61.11 ? C22 HAS 801 A 1 HETATM 56 C C23 HAS . . . F 6 -41.714 38.259 7.65 1 61.11 ? C23 HAS 801 A 1 HETATM 57 C C24 HAS . . . F 6 -43.127 37.734 7.731 1 61.11 ? C24 HAS 801 A 1 HETATM 58 C C25 HAS . . . F 6 -41.458 39.747 7.677 1 61.11 ? C25 HAS 801 A 1 HETATM 59 C C26 HAS . . . F 6 -31.589 37.137 6.15 1 61.11 ? C26 HAS 801 A 1 HETATM 60 C C27 HAS . . . F 6 -37.236 38.872 4.87 1 61.11 ? C27 HAS 801 A 1 HETATM 61 C C28 HAS . . . F 6 -43.758 37.825 9.105 1 61.11 ? C28 HAS 801 A 1 HETATM 62 C C29 HAS . . . F 6 -45.211 37.432 8.885 1 61.11 ? C29 HAS 801 A 1 HETATM 63 C C30 HAS . . . F 6 -46.145 37.424 9.859 1 61.11 ? C30 HAS 801 A 1 HETATM 64 C C31 HAS . . . F 6 -47.561 37.024 9.511 1 61.11 ? C31 HAS 801 A 1 HETATM 65 C C32 HAS . . . F 6 -45.824 37.803 11.284 1 61.11 ? C32 HAS 801 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #